Wall clock time and date at job start Mon Mar 30 2020 00:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.38353 * 127.15679 * 2 1 4 4 C 1.39779 * 126.56237 * 0.02562 * 3 2 1 5 5 H 1.08004 * 119.99586 * 0.30945 * 4 3 2 6 6 C 1.40077 * 119.99638 * 180.30984 * 4 3 2 7 7 N 1.30814 * 120.00292 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 119.99792 * 179.97438 * 6 4 3 9 9 H 1.48509 * 109.46931 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47430 * 119.99913 * 8 6 4 11 11 H 1.48496 * 109.47171 * 240.00102 * 8 6 4 12 12 N 1.33095 * 106.87117 * 180.28859 * 3 2 1 13 13 N 1.28520 * 109.74493 * 359.74227 * 12 3 2 14 14 C 1.32388 * 110.20407 * 359.97438 * 13 12 3 15 15 S 1.76198 * 126.25764 * 180.02562 * 14 13 12 16 16 C 1.81002 * 99.99878 * 0.02666 * 15 14 13 17 17 C 1.53006 * 109.47089 * 180.02562 * 16 15 14 18 18 C 1.52997 * 109.47127 * 180.02562 * 17 16 15 19 19 C 1.50696 * 109.47055 * 179.97438 * 18 17 16 20 20 O 1.20827 * 120.00253 * 0.02562 * 19 18 17 21 21 O 1.34237 * 119.99997 * 179.97438 * 19 18 17 22 22 H 1.08993 * 109.47110 * 270.16706 * 1 2 3 23 23 H 1.08999 * 109.46375 * 30.16653 * 1 2 3 24 24 H 1.08996 * 109.47013 * 150.15935 * 1 2 3 25 25 H 0.97001 * 120.00052 * 180.02562 * 7 6 4 26 26 H 1.09001 * 109.47446 * 60.00463 * 16 15 14 27 27 H 1.09001 * 109.47383 * 300.00236 * 16 15 14 28 28 H 1.09001 * 109.47002 * 299.99666 * 17 16 15 29 29 H 1.08993 * 109.46955 * 60.00103 * 17 16 15 30 30 H 1.09001 * 109.47289 * 299.99953 * 18 17 16 31 31 H 1.09004 * 109.47261 * 59.99697 * 18 17 16 32 32 H 0.96695 * 116.99741 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.3007 1.1027 0.0000 4 6 1.9088 2.4444 0.0005 5 1 0.8596 2.7005 0.0060 6 6 2.8770 3.4567 -0.0061 7 7 4.1478 3.1464 -0.0133 8 14 2.3533 5.2498 -0.0062 9 1 0.8706 5.3325 0.0008 10 1 2.8928 5.9232 1.2024 11 1 2.8802 5.9193 -1.2225 12 7 3.5491 0.6412 -0.0064 13 7 3.5370 -0.6439 -0.0048 14 6 2.2903 -1.0894 0.0032 15 16 1.7872 -2.7780 0.0088 16 6 3.4057 -3.5882 0.0015 17 6 3.2160 -5.1065 0.0045 18 6 4.5841 -5.7914 -0.0011 19 6 4.3973 -7.2867 0.0025 20 8 3.2841 -7.7565 0.0084 21 8 5.4676 -8.0969 -0.0019 22 1 -0.3633 0.0030 1.0276 23 1 -0.3632 0.8885 -0.5164 24 1 -0.3633 -0.8914 -0.5113 25 1 4.8182 3.8475 -0.0175 26 1 3.9654 -3.2900 0.8879 27 1 3.9558 -3.2929 -0.8920 28 1 2.6658 -5.4021 0.8978 29 1 2.6565 -5.4045 -0.8822 30 1 5.1348 -5.4958 -0.8942 31 1 5.1433 -5.4933 0.8858 32 1 5.2976 -9.0488 0.0002 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600912941.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:12 Heat of formation + Delta-G solvation = -62.978508 kcal Electronic energy + Delta-G solvation = -17582.970855 eV Core-core repulsion = 14476.459604 eV Total energy + Delta-G solvation = -3106.511251 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.44145 -41.20773 -37.21040 -35.71053 -35.58305 -35.09503 -31.31918 -29.60337 -28.22175 -27.40459 -24.15643 -22.77493 -22.34700 -21.52081 -19.25724 -19.03419 -18.00233 -17.43578 -17.32817 -17.04736 -16.57315 -16.16685 -15.80184 -15.47116 -15.00930 -14.18547 -13.97952 -13.81109 -13.57790 -13.35666 -12.95973 -12.91401 -12.82681 -12.74821 -12.50851 -11.94782 -11.93001 -11.75605 -11.65722 -11.53098 -11.44666 -10.56916 -10.35639 -10.26578 -8.54035 -8.52194 -6.57747 0.46419 1.19737 1.24261 1.31197 1.42640 1.60439 1.61764 2.18490 2.21817 2.45437 2.52002 3.34434 3.80536 3.88509 3.94985 4.08866 4.38297 4.45547 4.53043 4.62260 4.67905 4.76232 4.89433 4.96962 4.98256 5.16812 5.32871 5.57475 5.65882 6.04417 6.22758 6.76422 6.92774 7.03016 8.41842 8.64897 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.045728 B = 0.003421 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.173503 B = 8183.470145 C = 8764.587710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.523 5.523 3 C 0.316 3.684 4 C -0.472 4.472 5 H 0.102 0.898 6 C 0.028 3.972 7 N -0.788 5.788 8 Si 1.007 2.993 9 H -0.246 1.246 10 H -0.267 1.267 11 H -0.267 1.267 12 N -0.389 5.389 13 N -0.328 5.328 14 C 0.055 3.945 15 S -0.018 6.018 16 C -0.088 4.088 17 C -0.083 4.083 18 C -0.107 4.107 19 C 0.489 3.511 20 O -0.554 6.554 21 O -0.513 6.513 22 H 0.073 0.927 23 H 0.088 0.912 24 H 0.090 0.910 25 H 0.284 0.716 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.666 -13.522 -0.054 13.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.224 5.224 3 C 0.070 3.930 4 C -0.512 4.512 5 H 0.120 0.880 6 C -0.192 4.192 7 N -0.413 5.413 8 Si 0.826 3.174 9 H -0.169 1.169 10 H -0.192 1.192 11 H -0.192 1.192 12 N -0.235 5.235 13 N -0.173 5.173 14 C -0.319 4.319 15 S 0.209 5.791 16 C -0.238 4.238 17 C -0.123 4.123 18 C -0.146 4.146 19 C 0.333 3.667 20 O -0.445 6.445 21 O -0.327 6.327 22 H 0.092 0.908 23 H 0.107 0.893 24 H 0.109 0.891 25 H 0.095 0.905 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -2.231 -13.691 -0.062 13.872 hybrid contribution -0.237 0.798 0.015 0.832 sum -2.467 -12.893 -0.047 13.127 Atomic orbital electron populations 1.21844 0.75326 1.04440 1.03311 1.46393 1.08115 1.04516 1.63425 1.22050 0.85146 0.89933 0.95902 1.18651 0.95965 0.86497 1.50055 0.87961 1.26983 0.93927 1.06466 0.91848 1.70158 1.02375 1.36923 1.31811 0.84799 0.80088 0.73833 0.78694 1.16895 1.19210 1.19208 1.75308 1.17303 0.99243 1.31688 1.74390 1.17084 1.07016 1.18768 1.26441 0.91062 0.95527 1.18836 1.84310 1.12558 0.87246 1.94963 1.23373 0.96104 0.97595 1.06685 1.21053 0.97004 0.89514 1.04693 1.21345 0.99273 0.85612 1.08353 1.23606 0.81539 0.91284 0.70282 1.90732 1.27699 1.78408 1.47639 1.84512 1.38272 1.24980 1.84950 0.90824 0.89339 0.89103 0.90529 0.89416 0.89415 0.90222 0.90205 0.85420 0.85431 0.71098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.29 10.87 127.77 1.39 4.68 16 2 N -0.52 -25.40 3.26 -543.62 -1.77 -27.17 16 3 C 0.32 18.14 7.53 133.23 1.00 19.14 16 4 C -0.47 -25.27 9.04 23.09 0.21 -25.06 16 5 H 0.10 4.87 7.31 -2.91 -0.02 4.85 16 6 C 0.03 1.46 5.50 85.29 0.47 1.93 16 7 N -0.79 -44.57 11.94 21.85 0.26 -44.31 16 8 Si 1.01 37.66 29.56 68.60 2.03 39.68 16 9 H -0.25 -8.47 7.11 99.48 0.71 -7.76 16 10 H -0.27 -9.69 7.11 99.48 0.71 -8.98 16 11 H -0.27 -9.68 7.11 99.48 0.71 -8.98 16 12 N -0.39 -24.30 10.48 -55.02 -0.58 -24.88 16 13 N -0.33 -18.41 11.62 -56.18 -0.65 -19.06 16 14 C 0.06 2.65 8.09 179.18 1.45 4.10 16 15 S -0.02 -0.61 21.79 -56.49 -1.23 -1.84 16 16 C -0.09 -2.51 5.22 71.98 0.38 -2.14 16 17 C -0.08 -1.77 4.51 30.60 0.14 -1.63 16 18 C -0.11 -1.70 5.81 29.85 0.17 -1.53 16 19 C 0.49 8.77 8.33 71.23 0.59 9.36 16 20 O -0.55 -13.85 16.74 21.96 0.37 -13.48 16 21 O -0.51 -6.60 13.42 -51.49 -0.69 -7.29 16 22 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 23 H 0.09 2.91 7.54 -2.39 -0.02 2.89 16 24 H 0.09 2.73 7.85 -2.39 -0.02 2.71 16 25 H 0.28 14.46 8.30 -92.71 -0.77 13.69 16 26 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 27 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 28 H 0.08 1.74 8.10 -2.39 -0.02 1.72 16 29 H 0.08 1.74 8.10 -2.39 -0.02 1.72 16 30 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.13 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.43 1.99 9.10 -74.06 -0.67 1.32 16 Total: -1.00 -79.46 302.02 4.02 -75.44 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 0.48 Total: 14.04 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 5.80 Total: 8.86 kcal Atomic # 7 Polarization: -112.67 SS G_CDS: -2.74 Total: -115.41 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.32 Total: -20.77 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 2.03 Total: 39.68 kcal Atomic # 16 Polarization: -0.61 SS G_CDS: -1.23 Total: -1.84 kcal Total: -79.46 4.02 -75.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600912941.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.465 kcal (2) G-P(sol) polarization free energy of solvation -79.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds