Wall clock time and date at job start Mon Mar 30 2020 00:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86807 * 119.99891 * 2 1 4 4 H 1.48500 * 109.47017 * 240.00144 * 3 2 1 5 5 H 1.48494 * 109.47016 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47072 * 120.00191 * 3 2 1 7 7 C 1.38944 * 120.00275 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00567 * 159.57150 * 7 2 1 9 9 N 1.37102 * 119.99664 * 339.57472 * 7 2 1 10 10 C 1.46491 * 120.00222 * 324.10151 * 9 7 2 11 11 C 1.53000 * 109.47355 * 264.54682 * 10 9 7 12 12 C 1.50697 * 109.47351 * 179.97438 * 11 10 9 13 13 O 1.20825 * 119.99969 * 359.97438 * 12 11 10 14 14 O 1.34235 * 120.00184 * 179.97438 * 12 11 10 15 15 C 1.34782 * 119.99969 * 144.10422 * 9 7 2 16 16 O 1.21292 * 119.99985 * 180.02562 * 15 9 7 17 17 C 1.50704 * 119.99798 * 0.27344 * 15 9 7 18 18 H 1.09004 * 110.19273 * 304.02773 * 17 15 9 19 19 C 1.54481 * 110.22265 * 65.89216 * 17 15 9 20 20 C 1.54799 * 101.57046 * 144.29377 * 19 17 15 21 21 C 1.51326 * 103.97519 * 335.58790 * 20 19 17 22 22 O 1.20830 * 124.94724 * 195.97554 * 21 20 19 23 23 O 1.33827 * 110.09857 * 16.00109 * 21 20 19 24 24 H 0.96998 * 119.99518 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.47241 * 24.54492 * 10 9 7 26 26 H 1.09001 * 109.47135 * 144.54290 * 10 9 7 27 27 H 1.09003 * 109.47159 * 299.99727 * 11 10 9 28 28 H 1.09001 * 109.47318 * 59.99720 * 11 10 9 29 29 H 0.96701 * 117.00146 * 179.97438 * 14 12 11 30 30 H 1.09008 * 110.99569 * 262.43569 * 19 17 15 31 31 H 1.09005 * 110.99173 * 26.25758 * 19 17 15 32 32 H 1.09004 * 110.56633 * 216.93396 * 20 19 17 33 33 H 1.09000 * 110.59043 * 94.25070 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6965 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0380 -1.2326 -0.3270 9 7 1.3880 -2.3534 0.4133 10 6 0.4191 -2.3086 1.5111 11 6 1.1202 -2.6598 2.8249 12 6 0.1236 -2.6130 3.9543 13 8 -1.0290 -2.3275 3.7314 14 8 0.5165 -2.8885 5.2080 15 6 1.6692 -3.5255 -0.1898 16 8 1.1196 -4.5430 0.1760 17 6 2.6706 -3.5727 -1.3151 18 1 2.3804 -2.8814 -2.1063 19 6 4.0805 -3.2220 -0.7902 20 6 4.9717 -4.1513 -1.6495 21 6 4.0457 -5.2800 -2.0476 22 8 4.4040 -6.3465 -2.4882 23 8 2.7721 -4.9245 -1.8411 24 1 -0.4849 0.8401 0.0004 25 1 -0.0039 -1.3064 1.5817 26 1 -0.3784 -3.0270 1.3215 27 1 1.5432 -3.6620 2.7544 28 1 1.9177 -1.9414 3.0146 29 1 -0.1585 -2.8453 5.8991 30 1 4.3160 -2.1736 -0.9738 31 1 4.1737 -3.4618 0.2690 32 1 5.8072 -4.5315 -1.0616 33 1 5.3350 -3.6253 -2.5323 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601069318.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:06 Heat of formation + Delta-G solvation = -203.947213 kcal Electronic energy + Delta-G solvation = -21368.088455 eV Core-core repulsion = 17780.418720 eV Total energy + Delta-G solvation = -3587.669735 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.098 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.76473 -39.88615 -38.60736 -36.94643 -35.85515 -35.10459 -32.87815 -32.15097 -30.82126 -28.10871 -25.42712 -24.11604 -22.52674 -21.15901 -20.44216 -19.39138 -17.96568 -17.57582 -17.19011 -16.39064 -16.12777 -15.94286 -15.55940 -15.15721 -14.65494 -14.35196 -13.91549 -13.56395 -13.34657 -13.03767 -12.73057 -12.65861 -12.24289 -12.17520 -11.47178 -11.42937 -11.26442 -11.21700 -11.18665 -10.77082 -10.61661 -10.43310 -10.24652 -10.17261 -9.90354 -9.34418 -8.65190 -7.84436 -6.61516 -4.36640 2.41875 2.59656 2.94279 3.05630 3.08375 3.20835 3.33790 3.62856 3.91754 4.16813 4.45850 4.59226 4.75949 5.06067 5.10922 5.49252 5.59687 5.63406 5.68517 5.81162 5.95409 6.00705 6.11304 6.22259 6.69152 6.77059 7.11222 7.16880 7.25907 7.59348 7.73177 8.06556 8.23431 8.79702 9.15913 9.59401 10.39493 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.014034 B = 0.007447 C = 0.005454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.738401 B = 3759.149673 C = 5132.187888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.049 3.951 3 Si 0.915 3.085 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.368 4.368 8 H 0.100 0.900 9 N -0.427 5.427 10 C 0.129 3.871 11 C -0.127 4.127 12 C 0.483 3.517 13 O -0.513 6.513 14 O -0.524 6.524 15 C 0.467 3.533 16 O -0.580 6.580 17 C 0.083 3.917 18 H 0.125 0.875 19 C -0.137 4.137 20 C -0.189 4.189 21 C 0.482 3.518 22 O -0.475 6.475 23 O -0.319 6.319 24 H 0.276 0.724 25 H 0.120 0.880 26 H 0.066 0.934 27 H 0.099 0.901 28 H 0.105 0.895 29 H 0.402 0.598 30 H 0.113 0.887 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.333 1.700 3.427 8.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.160 4.160 3 Si 0.740 3.260 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.495 4.495 8 H 0.118 0.882 9 N -0.147 5.147 10 C 0.006 3.994 11 C -0.166 4.166 12 C 0.325 3.675 13 O -0.401 6.401 14 O -0.336 6.336 15 C 0.255 3.745 16 O -0.464 6.464 17 C 0.025 3.975 18 H 0.142 0.858 19 C -0.175 4.175 20 C -0.227 4.227 21 C 0.323 3.677 22 O -0.362 6.362 23 O -0.232 6.232 24 H 0.086 0.914 25 H 0.137 0.863 26 H 0.085 0.915 27 H 0.117 0.883 28 H 0.123 0.877 29 H 0.260 0.740 30 H 0.132 0.868 31 H 0.108 0.892 32 H 0.127 0.873 33 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.804 0.796 2.986 7.473 hybrid contribution 0.000 1.154 0.516 1.264 sum 6.805 1.951 3.502 7.898 Atomic orbital electron populations 1.69913 1.06350 1.28612 1.43018 1.25445 0.95101 1.00138 0.95275 0.86201 0.79456 0.81022 0.79307 1.19452 1.20723 1.19533 1.19638 0.96758 0.84866 1.48248 0.88219 1.43257 1.38141 1.05733 1.27552 1.21219 0.90553 1.05732 0.81938 1.21855 0.97862 1.05117 0.91719 1.23715 0.88982 0.71854 0.82912 1.90713 1.20876 1.44241 1.84239 1.84584 1.47022 1.83081 1.18919 1.19959 0.85531 0.85042 0.84002 1.90620 1.54839 1.34488 1.66419 1.23304 0.96670 0.79554 0.97983 0.85790 1.23054 0.91639 1.01844 1.00951 1.23061 1.00087 0.96724 1.02873 1.23096 0.82886 0.87731 0.73988 1.90675 1.77678 1.25124 1.42678 1.86801 1.28674 1.33412 1.74361 0.91377 0.86271 0.91537 0.88310 0.87686 0.74025 0.86831 0.89204 0.87273 0.86853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.44 11.36 55.50 0.63 -19.81 16 2 C 0.05 1.09 4.95 -17.47 -0.09 1.00 16 3 Si 0.91 16.95 29.60 -169.99 -5.03 11.92 16 4 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 5 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 7 C -0.37 -7.80 8.43 -14.93 -0.13 -7.92 16 8 H 0.10 1.84 4.77 -52.49 -0.25 1.59 16 9 N -0.43 -9.44 2.55 -114.81 -0.29 -9.74 16 10 C 0.13 2.87 4.18 -4.05 -0.02 2.85 16 11 C -0.13 -2.31 6.10 -27.88 -0.17 -2.48 16 12 C 0.48 8.42 8.33 36.00 0.30 8.72 16 13 O -0.51 -10.53 16.74 -18.75 -0.31 -10.84 16 14 O -0.52 -7.09 13.42 -39.27 -0.53 -7.61 16 15 C 0.47 10.41 6.94 -10.98 -0.08 10.33 16 16 O -0.58 -14.87 16.22 -13.63 -0.22 -15.10 16 17 C 0.08 1.51 3.26 -27.10 -0.09 1.42 16 18 H 0.12 2.11 8.01 -51.93 -0.42 1.70 16 19 C -0.14 -1.87 5.51 -25.01 -0.14 -2.01 16 20 C -0.19 -2.29 6.89 -26.63 -0.18 -2.47 16 21 C 0.48 8.36 8.65 36.31 0.31 8.67 16 22 O -0.48 -9.48 18.00 -18.44 -0.33 -9.82 16 23 O -0.32 -6.33 10.19 -44.57 -0.45 -6.79 16 24 H 0.28 6.37 8.31 -40.82 -0.34 6.03 16 25 H 0.12 2.87 5.39 -51.93 -0.28 2.59 16 26 H 0.07 1.62 7.55 -51.93 -0.39 1.23 16 27 H 0.10 1.79 8.14 -51.93 -0.42 1.36 16 28 H 0.10 1.76 8.14 -51.93 -0.42 1.33 16 29 H 0.40 3.53 9.10 45.56 0.41 3.94 16 30 H 0.11 1.34 6.45 -51.92 -0.34 1.01 16 31 H 0.09 1.25 7.91 -51.93 -0.41 0.84 16 32 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 292.67 15.07 4.41 4.41 Total: -1.00 -31.38 292.67 -4.90 -36.28 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -2.49 Total: 8.99 kcal Atomic # 6 Polarization: 18.38 SS G_CDS: -0.27 Total: 18.11 kcal Atomic # 7 Polarization: -29.89 SS G_CDS: 0.34 Total: -29.55 kcal Atomic # 8 Polarization: -48.30 SS G_CDS: -1.85 Total: -50.15 kcal Atomic # 14 Polarization: 16.95 SS G_CDS: -5.03 Total: 11.92 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.38 -4.90 -36.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069318.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.667 kcal (2) G-P(sol) polarization free energy of solvation -31.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds