Wall clock time and date at job start Mon Mar 30 2020 00:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86807 * 119.99891 * 2 1 4 4 H 1.48500 * 109.47017 * 240.00144 * 3 2 1 5 5 H 1.48494 * 109.47016 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47072 * 120.00191 * 3 2 1 7 7 C 1.38944 * 120.00275 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00567 * 159.57150 * 7 2 1 9 9 N 1.37102 * 119.99664 * 339.57472 * 7 2 1 10 10 C 1.46491 * 120.00222 * 324.10151 * 9 7 2 11 11 C 1.53000 * 109.47355 * 264.54682 * 10 9 7 12 12 C 1.50697 * 109.47351 * 179.97438 * 11 10 9 13 13 O 1.20825 * 119.99969 * 359.97438 * 12 11 10 14 14 O 1.34235 * 120.00184 * 179.97438 * 12 11 10 15 15 C 1.34782 * 119.99969 * 144.10422 * 9 7 2 16 16 O 1.21292 * 119.99985 * 180.02562 * 15 9 7 17 17 C 1.50704 * 119.99798 * 0.27344 * 15 9 7 18 18 H 1.09004 * 110.19273 * 304.02773 * 17 15 9 19 19 C 1.54481 * 110.22265 * 65.89216 * 17 15 9 20 20 C 1.54799 * 101.57046 * 144.29377 * 19 17 15 21 21 C 1.51326 * 103.97519 * 335.58790 * 20 19 17 22 22 O 1.20830 * 124.94724 * 195.97554 * 21 20 19 23 23 O 1.33827 * 110.09857 * 16.00109 * 21 20 19 24 24 H 0.96998 * 119.99518 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.47241 * 24.54492 * 10 9 7 26 26 H 1.09001 * 109.47135 * 144.54290 * 10 9 7 27 27 H 1.09003 * 109.47159 * 299.99727 * 11 10 9 28 28 H 1.09001 * 109.47318 * 59.99720 * 11 10 9 29 29 H 0.96701 * 117.00146 * 179.97438 * 14 12 11 30 30 H 1.09008 * 110.99569 * 262.43569 * 19 17 15 31 31 H 1.09005 * 110.99173 * 26.25758 * 19 17 15 32 32 H 1.09004 * 110.56633 * 216.93396 * 20 19 17 33 33 H 1.09000 * 110.59043 * 94.25070 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6965 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0380 -1.2326 -0.3270 9 7 1.3880 -2.3534 0.4133 10 6 0.4191 -2.3086 1.5111 11 6 1.1202 -2.6598 2.8249 12 6 0.1236 -2.6130 3.9543 13 8 -1.0290 -2.3275 3.7314 14 8 0.5165 -2.8885 5.2080 15 6 1.6692 -3.5255 -0.1898 16 8 1.1196 -4.5430 0.1760 17 6 2.6706 -3.5727 -1.3151 18 1 2.3804 -2.8814 -2.1063 19 6 4.0805 -3.2220 -0.7902 20 6 4.9717 -4.1513 -1.6495 21 6 4.0457 -5.2800 -2.0476 22 8 4.4040 -6.3465 -2.4882 23 8 2.7721 -4.9245 -1.8411 24 1 -0.4849 0.8401 0.0004 25 1 -0.0039 -1.3064 1.5817 26 1 -0.3784 -3.0270 1.3215 27 1 1.5432 -3.6620 2.7544 28 1 1.9177 -1.9414 3.0146 29 1 -0.1585 -2.8453 5.8991 30 1 4.3160 -2.1736 -0.9738 31 1 4.1737 -3.4618 0.2690 32 1 5.8072 -4.5315 -1.0616 33 1 5.3350 -3.6253 -2.5323 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601069318.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:06 Heat of formation + Delta-G solvation = -225.385268 kcal Electronic energy + Delta-G solvation = -21369.018079 eV Core-core repulsion = 17780.418720 eV Total energy + Delta-G solvation = -3588.599359 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.098 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.16436 -41.30094 -40.23905 -38.41391 -37.21880 -36.82316 -34.13173 -33.83139 -32.37747 -29.47868 -27.11389 -25.66343 -23.77940 -22.53239 -21.83440 -21.06104 -19.45581 -19.01256 -18.54807 -17.79418 -17.57733 -17.50771 -17.00178 -16.69474 -16.18932 -15.94265 -15.41430 -14.77193 -14.73127 -14.54513 -14.25283 -14.11157 -13.72358 -13.39635 -12.98916 -12.96245 -12.75504 -12.56385 -12.43917 -12.18748 -12.10318 -11.91718 -11.82852 -11.65541 -11.22547 -11.00544 -10.37934 -9.59755 -8.29351 -6.09459 1.10274 1.18861 1.47667 1.59042 1.66960 1.78700 1.82881 2.20709 2.39835 2.99847 3.02870 3.08109 3.43312 3.89405 3.95890 4.01266 4.12520 4.33083 4.49280 4.50599 4.73461 4.75338 4.92303 4.96797 5.03283 5.35418 5.54455 5.59698 5.85069 5.88786 6.36581 6.42441 6.99565 7.09942 7.45488 7.89708 8.73102 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.014034 B = 0.007447 C = 0.005454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.738401 B = 3759.149673 C = 5132.187888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.004 3.996 3 Si 0.982 3.018 4 H -0.251 1.251 5 H -0.300 1.300 6 H -0.260 1.260 7 C -0.370 4.370 8 H 0.135 0.865 9 N -0.431 5.431 10 C 0.132 3.868 11 C -0.117 4.117 12 C 0.493 3.507 13 O -0.551 6.551 14 O -0.507 6.507 15 C 0.452 3.548 16 O -0.627 6.627 17 C 0.084 3.916 18 H 0.135 0.865 19 C -0.127 4.127 20 C -0.164 4.164 21 C 0.473 3.527 22 O -0.512 6.512 23 O -0.356 6.356 24 H 0.272 0.728 25 H 0.101 0.899 26 H 0.028 0.972 27 H 0.100 0.900 28 H 0.127 0.873 29 H 0.427 0.573 30 H 0.143 0.857 31 H 0.088 0.912 32 H 0.137 0.863 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.576 3.232 3.809 11.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.200 4.200 3 Si 0.805 3.195 4 H -0.175 1.175 5 H -0.226 1.226 6 H -0.184 1.184 7 C -0.496 4.496 8 H 0.152 0.848 9 N -0.149 5.149 10 C 0.007 3.993 11 C -0.155 4.155 12 C 0.337 3.663 13 O -0.442 6.442 14 O -0.321 6.321 15 C 0.241 3.759 16 O -0.515 6.515 17 C 0.026 3.974 18 H 0.152 0.848 19 C -0.165 4.165 20 C -0.202 4.202 21 C 0.317 3.683 22 O -0.401 6.401 23 O -0.271 6.271 24 H 0.081 0.919 25 H 0.119 0.881 26 H 0.047 0.953 27 H 0.119 0.881 28 H 0.145 0.855 29 H 0.288 0.712 30 H 0.161 0.839 31 H 0.107 0.893 32 H 0.155 0.845 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 10.086 2.336 3.399 10.897 hybrid contribution -1.098 0.615 0.441 1.334 sum 8.988 2.951 3.840 10.210 Atomic orbital electron populations 1.70068 1.08380 1.29081 1.45213 1.26362 0.95475 1.03460 0.94706 0.85147 0.77916 0.76139 0.80269 1.17460 1.22616 1.18415 1.20303 0.97959 0.84123 1.47175 0.84842 1.43489 1.37584 1.06308 1.27505 1.20995 0.90523 1.03406 0.84337 1.21626 0.97998 1.05668 0.90252 1.23426 0.87945 0.71041 0.83914 1.90713 1.22284 1.46175 1.85036 1.84501 1.47629 1.81971 1.17957 1.20753 0.86102 0.84353 0.84701 1.90580 1.56822 1.36006 1.68053 1.23336 0.98228 0.79189 0.96638 0.84796 1.23128 0.88491 1.03810 1.01060 1.23080 0.98882 0.93946 1.04263 1.24015 0.82965 0.88462 0.72885 1.90646 1.78014 1.27075 1.44334 1.86753 1.31158 1.34514 1.74663 0.91871 0.88142 0.95325 0.88131 0.85529 0.71176 0.83877 0.89300 0.84469 0.83092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -43.94 11.36 21.66 0.25 -43.70 16 2 C 0.00 0.18 4.95 84.92 0.42 0.60 16 3 Si 0.98 32.97 29.60 68.60 2.03 35.00 16 4 H -0.25 -7.64 7.11 99.48 0.71 -6.93 16 5 H -0.30 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.26 -8.24 7.11 99.48 0.71 -7.54 16 7 C -0.37 -14.96 8.43 84.04 0.71 -14.25 16 8 H 0.13 4.37 4.77 -2.91 -0.01 4.35 16 9 N -0.43 -19.05 2.55 -635.54 -1.62 -20.66 16 10 C 0.13 6.03 4.18 86.38 0.36 6.39 16 11 C -0.12 -4.23 6.10 29.85 0.18 -4.05 16 12 C 0.49 16.98 8.33 71.23 0.59 17.57 16 13 O -0.55 -23.09 16.74 21.97 0.37 -22.72 16 14 O -0.51 -12.62 13.42 -51.46 -0.69 -13.31 16 15 C 0.45 20.31 6.94 87.66 0.61 20.92 16 16 O -0.63 -33.45 16.22 15.27 0.25 -33.21 16 17 C 0.08 2.92 3.26 30.35 0.10 3.02 16 18 H 0.13 4.34 8.01 -2.38 -0.02 4.32 16 19 C -0.13 -2.96 5.51 31.71 0.17 -2.79 16 20 C -0.16 -3.24 6.89 30.66 0.21 -3.03 16 21 C 0.47 15.70 8.65 71.43 0.62 16.32 16 22 O -0.51 -20.18 18.00 21.65 0.39 -19.79 16 23 O -0.36 -14.10 10.19 -41.53 -0.42 -14.52 16 24 H 0.27 12.92 8.31 -92.71 -0.77 12.15 16 25 H 0.10 5.03 5.39 -2.38 -0.01 5.01 16 26 H 0.03 1.48 7.55 -2.39 -0.02 1.46 16 27 H 0.10 3.62 8.14 -2.39 -0.02 3.60 16 28 H 0.13 4.01 8.14 -2.39 -0.02 3.99 16 29 H 0.43 6.43 9.10 -74.06 -0.67 5.76 16 30 H 0.14 2.51 6.45 -2.38 -0.02 2.50 16 31 H 0.09 2.13 7.91 -2.38 -0.02 2.12 16 32 H 0.14 2.07 8.14 -2.38 -0.02 2.05 16 33 H 0.15 1.96 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -72.62 292.67 5.03 -67.59 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: 0.50 Total: 24.62 kcal Atomic # 6 Polarization: 36.73 SS G_CDS: 3.98 Total: 40.71 kcal Atomic # 7 Polarization: -62.99 SS G_CDS: -1.37 Total: -64.36 kcal Atomic # 8 Polarization: -103.45 SS G_CDS: -0.11 Total: -103.56 kcal Atomic # 14 Polarization: 32.97 SS G_CDS: 2.03 Total: 35.00 kcal Total: -72.62 5.03 -67.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069318.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.791 kcal (2) G-P(sol) polarization free energy of solvation -72.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds