Wall clock time and date at job start Mon Mar 30 2020 01:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31423 * 1 3 3 Si 1.86800 * 119.99894 * 2 1 4 4 H 1.48501 * 109.47007 * 269.99935 * 3 2 1 5 5 H 1.48492 * 109.47254 * 29.99827 * 3 2 1 6 6 H 1.48502 * 109.47271 * 150.00237 * 3 2 1 7 7 C 1.38976 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00465 * 158.77647 * 7 2 1 9 9 N 1.36907 * 119.99916 * 338.77659 * 7 2 1 10 10 C 1.46504 * 119.99986 * 138.78136 * 9 7 2 11 11 C 1.52995 * 109.46905 * 295.36450 * 10 9 7 12 12 C 1.50704 * 109.46841 * 179.97438 * 11 10 9 13 13 O 1.20820 * 120.00142 * 0.02562 * 12 11 10 14 14 O 1.34235 * 119.99834 * 180.02562 * 12 11 10 15 15 C 1.34777 * 120.00178 * 318.77793 * 9 7 2 16 16 O 1.21786 * 119.99841 * 357.69709 * 15 9 7 17 17 C 1.46259 * 120.00207 * 177.96730 * 15 9 7 18 18 C 1.34140 * 119.24032 * 320.35581 * 17 15 9 19 19 O 1.35006 * 121.66022 * 180.61549 * 18 17 15 20 20 C 1.43244 * 116.75660 * 342.62686 * 19 18 17 21 21 C 1.53543 * 108.10564 * 45.53871 * 20 19 18 22 22 O 1.36192 * 119.24286 * 140.08491 * 17 15 9 23 23 H 0.96994 * 120.00067 * 5.06546 * 1 2 3 24 24 H 1.09006 * 109.46962 * 55.36439 * 10 9 7 25 25 H 1.09001 * 109.47279 * 175.36501 * 10 9 7 26 26 H 1.08998 * 109.47593 * 299.99622 * 11 10 9 27 27 H 1.08998 * 109.47634 * 60.00486 * 11 10 9 28 28 H 0.96699 * 116.99935 * 180.02562 * 14 12 11 29 29 H 1.08001 * 119.17620 * 0.59530 * 18 17 15 30 30 H 1.09004 * 109.73854 * 165.18703 * 20 19 18 31 31 H 1.09003 * 109.73917 * 285.88151 * 20 19 18 32 32 H 1.09001 * 109.74964 * 61.46968 * 21 20 19 33 33 H 1.08997 * 109.75478 * 182.20781 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4457 2.6526 0.7000 6 1 3.5458 1.4402 0.7000 7 6 2.0091 -1.2036 0.0005 8 1 3.0342 -1.2355 -0.3380 9 7 1.3942 -2.3488 0.4303 10 6 1.6016 -3.6067 -0.2916 11 6 1.0188 -3.4878 -1.7012 12 6 1.2327 -4.7815 -2.4439 13 8 1.7933 -5.7040 -1.9013 14 8 0.8004 -4.9088 -3.7084 15 6 0.5982 -2.3191 1.5174 16 8 0.4590 -1.2830 2.1421 17 6 -0.0939 -3.5326 1.9504 18 6 -0.6183 -4.3526 1.0274 19 8 -1.2777 -5.4790 1.3728 20 6 -1.0719 -5.9639 2.7049 21 6 -1.1741 -4.7723 3.6677 22 8 -0.1864 -3.8069 3.2812 23 1 -0.4850 0.8367 -0.0742 24 1 2.6693 -3.8167 -0.3563 25 1 1.1035 -4.4173 0.2403 26 1 -0.0488 -3.2778 -1.6365 27 1 1.5169 -2.6773 -2.2332 28 1 0.9601 -5.7575 -4.1435 29 1 -0.5107 -4.1055 -0.0184 30 1 -1.8358 -6.7018 2.9501 31 1 -0.0834 -6.4167 2.7832 32 1 -2.1691 -4.3317 3.6041 33 1 -0.9826 -5.1053 4.6877 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601070196.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:01 Heat of formation + Delta-G solvation = -150.947792 kcal Electronic energy + Delta-G solvation = -21852.525747 eV Core-core repulsion = 18267.154240 eV Total energy + Delta-G solvation = -3585.371508 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.098 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.65284 -39.93912 -38.23124 -36.56667 -35.93729 -34.55985 -32.62778 -31.19657 -30.18804 -28.48531 -25.20627 -24.90331 -23.73970 -21.00948 -20.30036 -19.48754 -17.91854 -17.79878 -17.25641 -16.61406 -16.15358 -15.64344 -15.52620 -14.88984 -14.77893 -14.43947 -13.92140 -13.79264 -13.64866 -13.31700 -12.80754 -12.37784 -12.17314 -11.91885 -11.67013 -11.32508 -11.22524 -10.86863 -10.76036 -10.62930 -10.59768 -10.33029 -10.21012 -10.11743 -8.89920 -8.35700 -7.45903 -7.28473 -6.24677 -3.95017 2.23164 2.48790 3.25276 3.27901 3.38511 3.41514 3.51773 3.62356 4.24752 4.47343 4.62143 4.97878 5.08390 5.14340 5.18218 5.36663 5.46517 5.53005 5.63614 5.67912 5.70525 5.91136 6.08839 6.35743 6.53974 6.55570 6.74796 7.20500 7.53369 7.91445 8.11804 8.16235 8.87245 9.04256 9.48077 10.11718 10.84738 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.013466 B = 0.009260 C = 0.005906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.840232 B = 3023.157717 C = 4739.656778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.074 3.926 3 Si 0.916 3.084 4 H -0.281 1.281 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.355 4.355 8 H 0.086 0.914 9 N -0.437 5.437 10 C 0.093 3.907 11 C -0.124 4.124 12 C 0.481 3.519 13 O -0.522 6.522 14 O -0.519 6.519 15 C 0.530 3.470 16 O -0.516 6.516 17 C -0.031 4.031 18 C -0.055 4.055 19 O -0.310 6.310 20 C 0.016 3.984 21 C 0.017 3.983 22 O -0.290 6.290 23 H 0.268 0.732 24 H 0.066 0.934 25 H 0.088 0.912 26 H 0.106 0.894 27 H 0.123 0.877 28 H 0.402 0.598 29 H 0.182 0.818 30 H 0.112 0.888 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.859 -10.974 -1.873 11.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.138 4.138 3 Si 0.743 3.257 4 H -0.208 1.208 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.481 4.481 8 H 0.104 0.896 9 N -0.160 5.160 10 C -0.032 4.032 11 C -0.162 4.162 12 C 0.324 3.676 13 O -0.411 6.411 14 O -0.331 6.331 15 C 0.317 3.683 16 O -0.394 6.394 17 C -0.080 4.080 18 C -0.119 4.119 19 O -0.224 6.224 20 C -0.060 4.060 21 C -0.060 4.060 22 O -0.203 6.203 23 H 0.078 0.922 24 H 0.085 0.915 25 H 0.106 0.894 26 H 0.124 0.876 27 H 0.141 0.859 28 H 0.260 0.740 29 H 0.198 0.802 30 H 0.130 0.870 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.030 -10.197 -1.063 10.451 hybrid contribution 0.242 0.064 -0.332 0.415 sum -1.788 -10.133 -1.394 10.384 Atomic orbital electron populations 1.69808 1.06746 1.28051 1.41267 1.25251 0.94829 0.99676 0.94049 0.86144 0.79934 0.81932 0.77681 1.20751 1.20881 1.19433 1.18981 0.96449 0.84435 1.48191 0.89606 1.43043 1.43678 1.07153 1.22124 1.21819 1.01223 0.89981 0.90129 1.21828 1.05229 0.92277 0.96908 1.23922 0.73864 0.90494 0.79326 1.90687 1.40120 1.42016 1.68237 1.84611 1.76188 1.43305 1.28959 1.16687 0.83844 0.85609 0.82163 1.90687 1.62215 1.31526 1.54929 1.21284 1.06555 0.97343 0.82865 1.23357 1.02209 0.86997 0.99355 1.86040 1.66144 1.39703 1.30505 1.23559 1.03430 0.96447 0.82587 1.23582 0.93135 0.89727 0.99541 1.86439 1.54632 1.58590 1.20669 0.92163 0.91549 0.89394 0.87643 0.85945 0.73990 0.80186 0.87015 0.90753 0.90913 0.86875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.49 11.75 55.50 0.65 -22.83 16 2 C 0.07 2.00 4.28 -17.45 -0.07 1.92 16 3 Si 0.92 21.32 29.61 -169.99 -5.03 16.28 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.35 -9.31 8.58 -15.01 -0.13 -9.44 16 8 H 0.09 2.14 7.92 -52.49 -0.42 1.73 16 9 N -0.44 -10.77 2.65 -116.43 -0.31 -11.08 16 10 C 0.09 1.84 4.15 -4.04 -0.02 1.82 16 11 C -0.12 -2.15 5.30 -27.88 -0.15 -2.30 16 12 C 0.48 7.44 8.33 36.01 0.30 7.74 16 13 O -0.52 -9.19 16.74 -18.74 -0.31 -9.51 16 14 O -0.52 -6.45 13.42 -39.27 -0.53 -6.98 16 15 C 0.53 14.08 6.63 -13.04 -0.09 13.99 16 16 O -0.52 -15.92 14.80 -2.81 -0.04 -15.97 16 17 C -0.03 -0.70 6.00 -37.80 -0.23 -0.93 16 18 C -0.05 -1.07 8.28 29.29 0.24 -0.83 16 19 O -0.31 -5.30 10.47 -30.81 -0.32 -5.62 16 20 C 0.02 0.21 7.29 37.44 0.27 0.48 16 21 C 0.02 0.24 7.31 37.44 0.27 0.51 16 22 O -0.29 -6.05 10.47 -42.48 -0.44 -6.50 16 23 H 0.27 7.31 8.32 -40.82 -0.34 6.97 16 24 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 25 H 0.09 1.70 4.12 -51.93 -0.21 1.49 16 26 H 0.11 1.85 6.97 -51.93 -0.36 1.49 16 27 H 0.12 2.17 7.76 -51.93 -0.40 1.77 16 28 H 0.40 3.05 9.10 45.56 0.41 3.47 16 29 H 0.18 3.45 4.33 -52.49 -0.23 3.22 16 30 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 LS Contribution 286.56 15.07 4.32 4.32 Total: -1.00 -35.30 286.56 -4.07 -39.37 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -2.45 Total: 5.52 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: 0.41 Total: 12.98 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: 0.34 Total: -33.91 kcal Atomic # 8 Polarization: -42.92 SS G_CDS: -1.65 Total: -44.57 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -35.30 -4.07 -39.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070196.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.579 kcal (2) G-P(sol) polarization free energy of solvation -35.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds