Wall clock time and date at job start Mon Mar 30 2020 01:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31423 * 1 3 3 Si 1.86800 * 119.99894 * 2 1 4 4 H 1.48501 * 109.47007 * 269.99935 * 3 2 1 5 5 H 1.48492 * 109.47254 * 29.99827 * 3 2 1 6 6 H 1.48502 * 109.47271 * 150.00237 * 3 2 1 7 7 C 1.38976 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00465 * 158.77647 * 7 2 1 9 9 N 1.36907 * 119.99916 * 338.77659 * 7 2 1 10 10 C 1.46504 * 119.99986 * 138.78136 * 9 7 2 11 11 C 1.52995 * 109.46905 * 295.36450 * 10 9 7 12 12 C 1.50704 * 109.46841 * 179.97438 * 11 10 9 13 13 O 1.20820 * 120.00142 * 0.02562 * 12 11 10 14 14 O 1.34235 * 119.99834 * 180.02562 * 12 11 10 15 15 C 1.34777 * 120.00178 * 318.77793 * 9 7 2 16 16 O 1.21786 * 119.99841 * 357.69709 * 15 9 7 17 17 C 1.46259 * 120.00207 * 177.96730 * 15 9 7 18 18 C 1.34140 * 119.24032 * 320.35581 * 17 15 9 19 19 O 1.35006 * 121.66022 * 180.61549 * 18 17 15 20 20 C 1.43244 * 116.75660 * 342.62686 * 19 18 17 21 21 C 1.53543 * 108.10564 * 45.53871 * 20 19 18 22 22 O 1.36192 * 119.24286 * 140.08491 * 17 15 9 23 23 H 0.96994 * 120.00067 * 5.06546 * 1 2 3 24 24 H 1.09006 * 109.46962 * 55.36439 * 10 9 7 25 25 H 1.09001 * 109.47279 * 175.36501 * 10 9 7 26 26 H 1.08998 * 109.47593 * 299.99622 * 11 10 9 27 27 H 1.08998 * 109.47634 * 60.00486 * 11 10 9 28 28 H 0.96699 * 116.99935 * 180.02562 * 14 12 11 29 29 H 1.08001 * 119.17620 * 0.59530 * 18 17 15 30 30 H 1.09004 * 109.73854 * 165.18703 * 20 19 18 31 31 H 1.09003 * 109.73917 * 285.88151 * 20 19 18 32 32 H 1.09001 * 109.74964 * 61.46968 * 21 20 19 33 33 H 1.08997 * 109.75478 * 182.20781 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4457 2.6526 0.7000 6 1 3.5458 1.4402 0.7000 7 6 2.0091 -1.2036 0.0005 8 1 3.0342 -1.2355 -0.3380 9 7 1.3942 -2.3488 0.4303 10 6 1.6016 -3.6067 -0.2916 11 6 1.0188 -3.4878 -1.7012 12 6 1.2327 -4.7815 -2.4439 13 8 1.7933 -5.7040 -1.9013 14 8 0.8004 -4.9088 -3.7084 15 6 0.5982 -2.3191 1.5174 16 8 0.4590 -1.2830 2.1421 17 6 -0.0939 -3.5326 1.9504 18 6 -0.6183 -4.3526 1.0274 19 8 -1.2777 -5.4790 1.3728 20 6 -1.0719 -5.9639 2.7049 21 6 -1.1741 -4.7723 3.6677 22 8 -0.1864 -3.8069 3.2812 23 1 -0.4850 0.8367 -0.0742 24 1 2.6693 -3.8167 -0.3563 25 1 1.1035 -4.4173 0.2403 26 1 -0.0488 -3.2778 -1.6365 27 1 1.5169 -2.6773 -2.2332 28 1 0.9601 -5.7575 -4.1435 29 1 -0.5107 -4.1055 -0.0184 30 1 -1.8358 -6.7018 2.9501 31 1 -0.0834 -6.4167 2.7832 32 1 -2.1691 -4.3317 3.6041 33 1 -0.9826 -5.1053 4.6877 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601070196.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:00 Heat of formation + Delta-G solvation = -178.010983 kcal Electronic energy + Delta-G solvation = -21853.699295 eV Core-core repulsion = 18267.154240 eV Total energy + Delta-G solvation = -3586.545056 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.098 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.11940 -41.19368 -40.01814 -38.00804 -37.14902 -36.40806 -34.49652 -32.67345 -31.86107 -29.91810 -27.02538 -26.35623 -25.27282 -22.57885 -21.76801 -21.01143 -19.25799 -19.16816 -18.93749 -18.15627 -17.52334 -17.17110 -16.96506 -16.58960 -16.38634 -15.78817 -15.60485 -15.25130 -15.13727 -15.01637 -14.29706 -13.91306 -13.74588 -13.47631 -13.23458 -12.94318 -12.68590 -12.64979 -12.47571 -12.27464 -12.02589 -11.86608 -11.58941 -11.51705 -10.86190 -10.34494 -9.32687 -8.99704 -8.27711 -6.00786 0.60757 1.24226 1.40918 1.50044 1.56589 1.94901 2.12314 2.28743 2.37988 2.63993 3.24213 3.34085 3.50700 3.92715 3.97218 3.99705 4.02485 4.08896 4.27017 4.47800 4.51766 4.62570 4.64585 4.83866 4.97494 5.08777 5.48041 5.65209 5.82895 6.14536 6.45668 6.88636 7.06099 7.10388 7.50056 8.15956 8.82451 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.013466 B = 0.009260 C = 0.005906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.840232 B = 3023.157717 C = 4739.656778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.028 3.972 3 Si 0.973 3.027 4 H -0.257 1.257 5 H -0.296 1.296 6 H -0.270 1.270 7 C -0.368 4.368 8 H 0.094 0.906 9 N -0.443 5.443 10 C 0.096 3.904 11 C -0.118 4.118 12 C 0.499 3.501 13 O -0.543 6.543 14 O -0.509 6.509 15 C 0.515 3.485 16 O -0.578 6.578 17 C -0.064 4.064 18 C -0.017 4.017 19 O -0.312 6.312 20 C 0.012 3.988 21 C 0.007 3.993 22 O -0.321 6.321 23 H 0.265 0.735 24 H 0.071 0.929 25 H 0.094 0.906 26 H 0.103 0.897 27 H 0.118 0.882 28 H 0.428 0.572 29 H 0.182 0.818 30 H 0.160 0.840 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.964 -13.027 -2.675 13.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.180 4.180 3 Si 0.798 3.202 4 H -0.181 1.181 5 H -0.222 1.222 6 H -0.194 1.194 7 C -0.494 4.494 8 H 0.112 0.888 9 N -0.165 5.165 10 C -0.027 4.027 11 C -0.156 4.156 12 C 0.342 3.658 13 O -0.433 6.433 14 O -0.323 6.323 15 C 0.304 3.696 16 O -0.461 6.461 17 C -0.113 4.113 18 C -0.082 4.082 19 O -0.225 6.225 20 C -0.063 4.063 21 C -0.068 4.068 22 O -0.236 6.236 23 H 0.074 0.926 24 H 0.089 0.911 25 H 0.112 0.888 26 H 0.121 0.879 27 H 0.136 0.864 28 H 0.290 0.710 29 H 0.199 0.801 30 H 0.178 0.822 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.123 -12.319 -1.930 12.649 hybrid contribution 0.224 0.505 -0.077 0.558 sum -1.898 -11.814 -2.007 12.133 Atomic orbital electron populations 1.69905 1.08157 1.28296 1.43020 1.26048 0.95463 1.02711 0.93781 0.85270 0.78284 0.78000 0.78671 1.18136 1.22241 1.19433 1.19310 0.97006 0.85445 1.47679 0.88812 1.43215 1.42874 1.08205 1.22196 1.21853 1.01763 0.87884 0.91213 1.21556 1.04740 0.93621 0.95685 1.23211 0.73435 0.89123 0.80028 1.90693 1.41203 1.42430 1.69023 1.84528 1.75280 1.45221 1.27255 1.17365 0.83883 0.86389 0.81924 1.90619 1.64724 1.33962 1.56747 1.20656 1.09054 0.97230 0.84353 1.23270 0.99341 0.86789 0.98816 1.86039 1.65214 1.38170 1.33071 1.24009 1.05886 0.96475 0.79884 1.24041 0.91901 0.88955 1.01897 1.86360 1.56688 1.60744 1.19758 0.92618 0.91101 0.88828 0.87942 0.86376 0.71010 0.80141 0.82207 0.89739 0.90943 0.82980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -50.45 11.75 21.67 0.25 -50.19 16 2 C 0.03 1.55 4.28 84.93 0.36 1.91 16 3 Si 0.97 44.44 29.61 68.60 2.03 46.47 16 4 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 5 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 7 C -0.37 -19.66 8.58 84.08 0.72 -18.94 16 8 H 0.09 4.71 7.92 -2.91 -0.02 4.69 16 9 N -0.44 -22.29 2.65 -640.47 -1.70 -23.99 16 10 C 0.10 3.79 4.15 86.38 0.36 4.14 16 11 C -0.12 -3.98 5.30 29.85 0.16 -3.82 16 12 C 0.50 14.35 8.33 71.24 0.59 14.94 16 13 O -0.54 -17.91 16.74 21.98 0.37 -17.54 16 14 O -0.51 -11.08 13.42 -51.46 -0.69 -11.77 16 15 C 0.52 28.28 6.63 86.33 0.57 28.85 16 16 O -0.58 -37.35 14.80 2.96 0.04 -37.31 16 17 C -0.06 -2.90 6.00 23.42 0.14 -2.76 16 18 C -0.02 -0.63 8.28 66.88 0.55 -0.08 16 19 O -0.31 -9.81 10.47 -69.32 -0.73 -10.54 16 20 C 0.01 0.27 7.29 72.16 0.53 0.80 16 21 C 0.01 0.19 7.31 72.16 0.53 0.71 16 22 O -0.32 -13.40 10.47 -74.58 -0.78 -14.18 16 23 H 0.26 14.94 8.32 -92.71 -0.77 14.17 16 24 H 0.07 2.72 8.10 -2.38 -0.02 2.70 16 25 H 0.09 3.56 4.12 -2.39 -0.01 3.55 16 26 H 0.10 3.55 6.97 -2.39 -0.02 3.53 16 27 H 0.12 4.12 7.76 -2.39 -0.02 4.10 16 28 H 0.43 4.91 9.10 -74.06 -0.67 4.23 16 29 H 0.18 6.77 4.33 -2.91 -0.01 6.76 16 30 H 0.16 2.13 8.14 -2.38 -0.02 2.11 16 31 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.15 2.78 8.14 -2.39 -0.02 2.76 16 Total: -1.00 -79.42 286.56 3.81 -75.61 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: 0.50 Total: 17.68 kcal Atomic # 6 Polarization: 21.24 SS G_CDS: 4.51 Total: 25.76 kcal Atomic # 7 Polarization: -72.74 SS G_CDS: -1.44 Total: -74.18 kcal Atomic # 8 Polarization: -89.55 SS G_CDS: -1.79 Total: -91.33 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -79.42 3.81 -75.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070196.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.403 kcal (2) G-P(sol) polarization free energy of solvation -79.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds