Wall clock time and date at job start Mon Mar 30 2020 01:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99565 * 2 1 4 4 H 1.48492 * 109.47212 * 240.00014 * 3 2 1 5 5 H 1.48504 * 109.47306 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46910 * 120.00149 * 3 2 1 7 7 C 1.38812 * 120.00511 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99890 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99475 * 0.26928 * 7 2 1 10 10 C 1.46506 * 119.99809 * 179.72751 * 9 7 2 11 11 H 1.09004 * 109.46853 * 36.85128 * 10 9 7 12 12 C 1.50696 * 109.47311 * 156.85698 * 10 9 7 13 13 O 1.20827 * 120.00045 * 359.97438 * 12 10 9 14 14 O 1.34226 * 120.00054 * 180.02562 * 12 10 9 15 15 C 1.50709 * 109.46863 * 276.85684 * 10 9 7 16 16 C 1.36123 * 120.17127 * 334.75070 * 15 10 9 17 17 C 1.39334 * 120.98686 * 179.97438 * 16 15 10 18 18 C 1.36128 * 120.98738 * 359.97438 * 17 16 15 19 19 C 1.40499 * 119.65609 * 0.02562 * 18 17 16 20 20 C 1.40551 * 121.29298 * 180.02562 * 19 18 17 21 21 C 1.36098 * 119.65023 * 179.18048 * 20 19 18 22 22 C 1.39383 * 120.99050 * 0.82756 * 21 20 19 23 23 C 1.36088 * 120.99637 * 359.43352 * 22 21 20 24 24 C 1.40496 * 120.16995 * 154.47904 * 15 10 9 25 25 H 0.96993 * 120.00612 * 359.97438 * 1 2 3 26 26 H 0.97000 * 120.00571 * 359.73011 * 9 7 2 27 27 H 0.96702 * 117.00171 * 179.97438 * 14 12 10 28 28 H 1.08003 * 119.50691 * 359.95919 * 16 15 10 29 29 H 1.08002 * 119.50858 * 179.97438 * 17 16 15 30 30 H 1.08004 * 120.16985 * 180.02562 * 18 17 16 31 31 H 1.07997 * 120.17315 * 359.95734 * 20 19 18 32 32 H 1.07996 * 119.50077 * 180.27955 * 21 20 19 33 33 H 1.07997 * 119.50321 * 179.44850 * 22 21 20 34 34 H 1.07993 * 120.17528 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2124 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0066 10 6 2.0583 -3.6567 -0.0132 11 1 2.9521 -3.5633 0.6036 12 6 1.1781 -4.7479 0.5396 13 8 0.0544 -4.4920 0.9023 14 8 1.6429 -6.0039 0.6299 15 6 2.4563 -3.9996 -1.4258 16 6 1.7402 -3.5121 -2.4758 17 6 2.0933 -3.8177 -3.7885 18 6 3.1650 -4.6124 -4.0591 19 6 3.9282 -5.1342 -3.0012 20 6 5.0417 -5.9576 -3.2411 21 6 5.7674 -6.4313 -2.1917 22 6 5.4135 -6.1262 -0.8785 23 6 4.3388 -5.3365 -0.6078 24 6 3.5717 -4.8194 -1.6659 25 1 -0.4851 0.8399 0.0004 26 1 0.3557 -2.3881 -0.0066 27 1 1.0417 -6.6695 0.9913 28 1 0.8854 -2.8790 -2.2886 29 1 1.5081 -3.4183 -4.6036 30 1 3.4271 -4.8405 -5.0817 31 1 5.3273 -6.2030 -4.2533 32 1 6.6252 -7.0601 -2.3790 33 1 6.0012 -6.5223 -0.0636 34 1 4.0768 -5.1083 0.4147 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601074808.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:25 Heat of formation + Delta-G solvation = -29.451666 kcal Electronic energy + Delta-G solvation = -20376.265022 eV Core-core repulsion = 17239.303996 eV Total energy + Delta-G solvation = -3136.961026 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.41922 -39.44270 -36.47041 -35.71883 -34.78826 -32.73163 -30.88922 -29.94508 -28.68352 -26.76168 -23.52805 -23.05974 -22.44777 -21.75681 -19.78965 -18.02041 -17.23863 -17.06900 -16.82507 -15.86556 -15.65728 -15.16886 -14.70783 -14.06159 -13.87621 -13.48270 -13.25932 -13.17841 -12.94448 -12.90728 -12.40812 -11.82183 -11.51668 -11.13155 -11.07673 -11.00909 -10.91025 -10.57275 -10.51095 -10.24376 -10.20951 -9.84504 -9.38359 -9.10318 -8.22786 -7.50564 -7.19037 -5.88678 -3.22999 0.86620 1.39582 2.36832 2.71750 3.30338 3.39607 3.42697 3.44323 3.57140 4.45979 4.54540 4.88287 5.06944 5.17074 5.28659 5.33979 5.43558 5.49355 5.60005 5.69981 5.80996 5.89326 5.94260 5.99506 6.14212 6.33112 6.46967 6.56894 6.66164 6.74304 6.86822 6.94943 7.14706 7.22622 7.42208 7.59180 8.23964 8.36700 9.39539 9.84410 10.23660 11.32013 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.017475 B = 0.006700 C = 0.005902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.860203 B = 4178.045358 C = 4742.734219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.000 4.000 3 Si 0.912 3.088 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.254 4.254 8 H 0.075 0.925 9 N -0.699 5.699 10 C 0.224 3.776 11 H 0.095 0.905 12 C 0.474 3.526 13 O -0.503 6.503 14 O -0.517 6.517 15 C -0.084 4.084 16 C -0.080 4.080 17 C -0.110 4.110 18 C -0.122 4.122 19 C -0.056 4.056 20 C -0.111 4.111 21 C -0.124 4.124 22 C -0.129 4.129 23 C -0.086 4.086 24 C -0.036 4.036 25 H 0.260 0.740 26 H 0.398 0.602 27 H 0.399 0.601 28 H 0.136 0.864 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.376 -13.273 -4.806 16.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.198 4.198 3 Si 0.742 3.258 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.384 4.384 8 H 0.093 0.907 9 N -0.342 5.342 10 C 0.111 3.889 11 H 0.112 0.888 12 C 0.315 3.685 13 O -0.390 6.390 14 O -0.328 6.328 15 C -0.088 4.088 16 C -0.098 4.098 17 C -0.128 4.128 18 C -0.140 4.140 19 C -0.056 4.056 20 C -0.129 4.129 21 C -0.142 4.142 22 C -0.148 4.148 23 C -0.104 4.104 24 C -0.036 4.036 25 H 0.069 0.931 26 H 0.235 0.765 27 H 0.257 0.743 28 H 0.154 0.846 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 8.385 -12.707 -4.828 15.972 hybrid contribution -0.245 0.527 0.182 0.608 sum 8.141 -12.181 -4.646 15.370 Atomic orbital electron populations 1.69687 1.05171 1.26288 1.55573 1.24791 0.95515 0.97827 1.01656 0.86216 0.78569 0.82993 0.78066 1.20941 1.21506 1.20981 1.19117 0.91118 0.83075 1.45084 0.90715 1.42334 1.06605 0.97959 1.87318 1.18563 0.93969 0.84388 0.91957 0.88754 1.24200 0.87108 0.82538 0.74667 1.90696 1.20636 1.82449 1.45182 1.84624 1.50034 1.19816 1.78277 1.20589 0.94683 0.96403 0.97100 1.20914 1.00153 0.97424 0.91318 1.20908 0.97128 0.97839 0.96928 1.20913 0.96183 0.99119 0.97771 1.18029 0.96288 0.98479 0.92829 1.20915 0.95125 0.98042 0.98858 1.20730 0.99839 1.00741 0.92889 1.20738 0.97862 0.99684 0.96472 1.21055 0.94361 0.96355 0.98644 1.17957 0.95531 0.97497 0.92656 0.93054 0.76507 0.74331 0.84579 0.86317 0.86259 0.86264 0.86696 0.86516 0.85570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.26 13.06 55.49 0.72 -26.53 16 2 C 0.00 -0.01 5.50 -17.43 -0.10 -0.10 16 3 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.25 -6.82 9.91 -15.06 -0.15 -6.97 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.70 -17.40 3.74 -55.68 -0.21 -17.61 16 10 C 0.22 4.56 2.42 -70.23 -0.17 4.39 16 11 H 0.10 1.84 6.63 -51.93 -0.34 1.49 16 12 C 0.47 8.95 7.68 36.00 0.28 9.23 16 13 O -0.50 -11.14 16.57 -18.75 -0.31 -11.45 16 14 O -0.52 -7.40 12.16 -39.25 -0.48 -7.88 16 15 C -0.08 -1.60 4.93 -104.53 -0.52 -2.12 16 16 C -0.08 -1.54 9.25 -39.93 -0.37 -1.91 16 17 C -0.11 -1.78 9.95 -39.93 -0.40 -2.18 16 18 C -0.12 -1.80 9.77 -39.49 -0.39 -2.18 16 19 C -0.06 -0.88 5.74 -106.83 -0.61 -1.49 16 20 C -0.11 -1.45 9.77 -39.48 -0.39 -1.83 16 21 C -0.12 -1.50 9.95 -39.92 -0.40 -1.90 16 22 C -0.13 -1.66 9.95 -39.93 -0.40 -2.06 16 23 C -0.09 -1.30 8.48 -39.48 -0.33 -1.63 16 24 C -0.04 -0.61 5.74 -106.83 -0.61 -1.22 16 25 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.40 10.88 6.94 -40.82 -0.28 10.60 16 27 H 0.40 3.89 9.10 45.56 0.41 4.30 16 28 H 0.14 2.93 7.21 -52.48 -0.38 2.55 16 29 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 30 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 31 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 32 H 0.11 1.07 8.06 -52.49 -0.42 0.64 16 33 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 34 H 0.13 1.81 6.11 -52.49 -0.32 1.49 16 LS Contribution 297.85 15.07 4.49 4.49 Total: -1.00 -31.89 297.85 -7.93 -39.82 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -2.57 Total: 14.28 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -4.55 Total: -11.98 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 0.52 Total: -44.14 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.79 Total: -19.33 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.89 -7.93 -39.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074808.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.367 kcal (2) G-P(sol) polarization free energy of solvation -31.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds