Wall clock time and date at job start Mon Mar 30 2020 01:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99565 * 2 1 4 4 H 1.48492 * 109.47212 * 240.00014 * 3 2 1 5 5 H 1.48504 * 109.47306 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46910 * 120.00149 * 3 2 1 7 7 C 1.38812 * 120.00511 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99890 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99475 * 0.26928 * 7 2 1 10 10 C 1.46506 * 119.99809 * 179.72751 * 9 7 2 11 11 H 1.09004 * 109.46853 * 36.85128 * 10 9 7 12 12 C 1.50696 * 109.47311 * 156.85698 * 10 9 7 13 13 O 1.20827 * 120.00045 * 359.97438 * 12 10 9 14 14 O 1.34226 * 120.00054 * 180.02562 * 12 10 9 15 15 C 1.50709 * 109.46863 * 276.85684 * 10 9 7 16 16 C 1.36123 * 120.17127 * 334.75070 * 15 10 9 17 17 C 1.39334 * 120.98686 * 179.97438 * 16 15 10 18 18 C 1.36128 * 120.98738 * 359.97438 * 17 16 15 19 19 C 1.40499 * 119.65609 * 0.02562 * 18 17 16 20 20 C 1.40551 * 121.29298 * 180.02562 * 19 18 17 21 21 C 1.36098 * 119.65023 * 179.18048 * 20 19 18 22 22 C 1.39383 * 120.99050 * 0.82756 * 21 20 19 23 23 C 1.36088 * 120.99637 * 359.43352 * 22 21 20 24 24 C 1.40496 * 120.16995 * 154.47904 * 15 10 9 25 25 H 0.96993 * 120.00612 * 359.97438 * 1 2 3 26 26 H 0.97000 * 120.00571 * 359.73011 * 9 7 2 27 27 H 0.96702 * 117.00171 * 179.97438 * 14 12 10 28 28 H 1.08003 * 119.50691 * 359.95919 * 16 15 10 29 29 H 1.08002 * 119.50858 * 179.97438 * 17 16 15 30 30 H 1.08004 * 120.16985 * 180.02562 * 18 17 16 31 31 H 1.07997 * 120.17315 * 359.95734 * 20 19 18 32 32 H 1.07996 * 119.50077 * 180.27955 * 21 20 19 33 33 H 1.07997 * 119.50321 * 179.44850 * 22 21 20 34 34 H 1.07993 * 120.17528 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2124 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0066 10 6 2.0583 -3.6567 -0.0132 11 1 2.9521 -3.5633 0.6036 12 6 1.1781 -4.7479 0.5396 13 8 0.0544 -4.4920 0.9023 14 8 1.6429 -6.0039 0.6299 15 6 2.4563 -3.9996 -1.4258 16 6 1.7402 -3.5121 -2.4758 17 6 2.0933 -3.8177 -3.7885 18 6 3.1650 -4.6124 -4.0591 19 6 3.9282 -5.1342 -3.0012 20 6 5.0417 -5.9576 -3.2411 21 6 5.7674 -6.4313 -2.1917 22 6 5.4135 -6.1262 -0.8785 23 6 4.3388 -5.3365 -0.6078 24 6 3.5717 -4.8194 -1.6659 25 1 -0.4851 0.8399 0.0004 26 1 0.3557 -2.3881 -0.0066 27 1 1.0417 -6.6695 0.9913 28 1 0.8854 -2.8790 -2.2886 29 1 1.5081 -3.4183 -4.6036 30 1 3.4271 -4.8405 -5.0817 31 1 5.3273 -6.2030 -4.2533 32 1 6.6252 -7.0601 -2.3790 33 1 6.0012 -6.5223 -0.0636 34 1 4.0768 -5.1083 0.4147 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601074808.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:24 Heat of formation + Delta-G solvation = -49.480385 kcal Electronic energy + Delta-G solvation = -20377.133533 eV Core-core repulsion = 17239.303996 eV Total energy + Delta-G solvation = -3137.829537 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.77915 -40.78824 -37.79849 -37.10822 -36.37923 -34.37306 -32.51052 -31.10916 -30.05837 -28.37160 -25.45601 -24.21877 -23.66335 -23.07475 -21.19659 -19.79839 -18.83984 -18.23943 -18.05465 -17.36920 -17.12416 -16.63108 -16.38349 -15.42161 -15.23573 -14.98081 -14.82092 -14.45881 -14.28095 -14.15468 -13.68914 -13.26579 -13.05802 -12.81417 -12.68466 -12.56384 -12.23044 -12.18551 -12.00331 -11.74663 -11.68110 -11.64003 -11.06442 -10.59553 -9.41044 -9.25769 -8.63754 -7.99772 -5.34914 -0.29591 0.22054 1.09685 1.27760 1.45918 1.49687 1.55564 2.00724 2.26572 2.56092 3.29008 3.32499 3.69778 3.76796 4.01615 4.08601 4.14103 4.26646 4.38910 4.44033 4.49347 4.62392 4.66372 4.76301 4.96523 5.14063 5.35363 5.41411 5.43536 5.49091 5.55175 5.67271 5.73820 5.89926 6.03852 6.16260 6.24513 6.98901 7.25086 7.86082 8.15030 9.22515 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.017475 B = 0.006700 C = 0.005902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.860203 B = 4178.045358 C = 4742.734219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.063 4.063 3 Si 0.977 3.023 4 H -0.276 1.276 5 H -0.294 1.294 6 H -0.274 1.274 7 C -0.248 4.248 8 H 0.081 0.919 9 N -0.715 5.715 10 C 0.221 3.779 11 H 0.101 0.899 12 C 0.487 3.513 13 O -0.543 6.543 14 O -0.496 6.496 15 C -0.100 4.100 16 C -0.103 4.103 17 C -0.130 4.130 18 C -0.103 4.103 19 C -0.075 4.075 20 C -0.109 4.109 21 C -0.120 4.120 22 C -0.116 4.116 23 C -0.112 4.112 24 C -0.052 4.052 25 H 0.254 0.746 26 H 0.381 0.619 27 H 0.424 0.576 28 H 0.098 0.902 29 H 0.135 0.865 30 H 0.158 0.842 31 H 0.153 0.847 32 H 0.153 0.847 33 H 0.146 0.854 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.819 -15.502 -6.014 20.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.256 4.256 3 Si 0.805 3.195 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.200 1.200 7 C -0.378 4.378 8 H 0.099 0.901 9 N -0.356 5.356 10 C 0.110 3.890 11 H 0.119 0.881 12 C 0.329 3.671 13 O -0.433 6.433 14 O -0.308 6.308 15 C -0.104 4.104 16 C -0.122 4.122 17 C -0.148 4.148 18 C -0.121 4.121 19 C -0.075 4.075 20 C -0.127 4.127 21 C -0.137 4.137 22 C -0.133 4.133 23 C -0.130 4.130 24 C -0.052 4.052 25 H 0.063 0.937 26 H 0.215 0.785 27 H 0.285 0.715 28 H 0.116 0.884 29 H 0.153 0.847 30 H 0.176 0.824 31 H 0.170 0.830 32 H 0.171 0.829 33 H 0.164 0.836 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 11.888 -15.012 -6.036 20.078 hybrid contribution -1.148 0.939 0.527 1.574 sum 10.740 -14.072 -5.509 18.540 Atomic orbital electron populations 1.69859 1.06809 1.26509 1.58068 1.25613 0.96287 1.01166 1.02537 0.85177 0.77219 0.78734 0.78384 1.20205 1.22025 1.20008 1.19454 0.91436 0.84025 1.42930 0.90121 1.42350 1.05884 0.99341 1.88030 1.18680 0.93675 0.83386 0.93303 0.88140 1.23767 0.86082 0.83601 0.73602 1.90687 1.22179 1.83355 1.47034 1.84537 1.50051 1.18516 1.77683 1.20313 0.96227 0.98372 0.95441 1.20789 0.99787 0.98184 0.93401 1.21028 0.98633 0.99256 0.95843 1.21326 0.94417 0.96821 0.99520 1.18397 0.97567 0.99322 0.92236 1.21297 0.93728 0.96697 1.00983 1.21207 1.00386 1.00064 0.92079 1.21158 0.96492 0.97561 0.98120 1.21117 0.95728 0.98097 0.98101 1.18095 0.95105 0.97653 0.94357 0.93712 0.78506 0.71483 0.88426 0.84688 0.82427 0.82972 0.82929 0.83614 0.85888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.89 13.06 21.65 0.28 -59.60 16 2 C -0.06 -3.62 5.50 84.86 0.47 -3.16 16 3 Si 0.98 46.16 29.55 68.60 2.03 48.19 16 4 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 6 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.25 -13.82 9.91 84.03 0.83 -12.99 16 8 H 0.08 4.29 7.83 -2.91 -0.02 4.26 16 9 N -0.71 -37.59 3.74 -330.08 -1.24 -38.82 16 10 C 0.22 9.32 2.42 43.50 0.11 9.42 16 11 H 0.10 4.04 6.63 -2.39 -0.02 4.02 16 12 C 0.49 18.90 7.68 71.23 0.55 19.44 16 13 O -0.54 -25.11 16.57 21.96 0.36 -24.74 16 14 O -0.50 -13.76 12.16 -51.38 -0.62 -14.39 16 15 C -0.10 -3.92 4.93 -19.80 -0.10 -4.02 16 16 C -0.10 -4.18 9.25 22.04 0.20 -3.98 16 17 C -0.13 -4.19 9.95 22.04 0.22 -3.97 16 18 C -0.10 -2.79 9.77 22.33 0.22 -2.57 16 19 C -0.08 -2.14 5.74 -21.30 -0.12 -2.26 16 20 C -0.11 -2.31 9.77 22.34 0.22 -2.09 16 21 C -0.12 -2.24 9.95 22.05 0.22 -2.02 16 22 C -0.12 -2.48 9.95 22.05 0.22 -2.26 16 23 C -0.11 -3.16 8.48 22.33 0.19 -2.97 16 24 C -0.05 -1.70 5.74 -21.30 -0.12 -1.83 16 25 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 26 H 0.38 22.37 6.94 -92.71 -0.64 21.73 16 27 H 0.42 7.57 9.10 -74.06 -0.67 6.89 16 28 H 0.10 4.63 7.21 -2.91 -0.02 4.61 16 29 H 0.14 3.74 8.06 -2.91 -0.02 3.71 16 30 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 31 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 32 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 33 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 34 H 0.12 3.41 6.11 -2.91 -0.02 3.39 16 Total: -1.00 -73.00 297.85 3.75 -69.25 By element: Atomic # 1 Polarization: 35.53 SS G_CDS: -0.16 Total: 35.37 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: 3.10 Total: -15.25 kcal Atomic # 7 Polarization: -97.47 SS G_CDS: -0.95 Total: -98.43 kcal Atomic # 8 Polarization: -38.87 SS G_CDS: -0.26 Total: -39.13 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -73.00 3.75 -69.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074808.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.769 kcal (2) G-P(sol) polarization free energy of solvation -72.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds