Wall clock time and date at job start Mon Mar 30 2020 01:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00210 * 2 1 4 4 H 1.48501 * 109.46723 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47060 * 300.00330 * 3 2 1 6 6 H 1.48501 * 109.46944 * 60.00492 * 3 2 1 7 7 C 1.38813 * 119.99466 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99705 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00341 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99823 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.47895 * 326.54859 * 10 9 7 12 12 C 1.50701 * 109.47019 * 206.54983 * 10 9 7 13 13 O 1.20823 * 120.00056 * 0.02562 * 12 10 9 14 14 O 1.34232 * 120.00094 * 180.02562 * 12 10 9 15 15 C 1.50705 * 109.47263 * 86.55123 * 10 9 7 16 16 C 1.36134 * 120.16818 * 19.48329 * 15 10 9 17 17 C 1.39326 * 120.98707 * 179.97438 * 16 15 10 18 18 C 1.36130 * 120.99077 * 0.02562 * 17 16 15 19 19 C 1.40497 * 119.65097 * 359.97438 * 18 17 16 20 20 C 1.40554 * 121.28791 * 179.97438 * 19 18 17 21 21 C 1.36088 * 119.65059 * 180.02562 * 20 19 18 22 22 C 1.39376 * 120.99917 * 0.02562 * 21 20 19 23 23 C 1.36090 * 120.98936 * 359.96002 * 22 21 20 24 24 C 1.40489 * 120.17417 * 199.46063 * 15 10 9 25 25 H 0.97001 * 119.99691 * 359.97438 * 1 2 3 26 26 H 0.96998 * 119.99809 * 0.02562 * 9 7 2 27 27 H 0.96699 * 117.00056 * 180.02562 * 14 12 10 28 28 H 1.07996 * 119.50343 * 0.02562 * 16 15 10 29 29 H 1.07998 * 119.50905 * 179.97438 * 17 16 15 30 30 H 1.07993 * 120.17704 * 179.72212 * 18 17 16 31 31 H 1.07996 * 120.17324 * 359.97438 * 20 19 18 32 32 H 1.08010 * 119.50036 * 179.97438 * 21 20 19 33 33 H 1.08000 * 119.50805 * 179.97438 * 22 21 20 34 34 H 1.08007 * 120.17100 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3963 1.2126 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0017 11 1 2.9817 -3.5427 -0.5688 12 6 1.2078 -4.7271 -0.6366 13 8 0.1036 -4.4576 -1.0465 14 8 1.6773 -5.9798 -0.7467 15 6 2.3842 -4.0498 1.4162 16 6 1.6895 -3.5072 2.4536 17 6 1.9765 -3.8587 3.7709 18 6 2.9603 -4.7545 4.0589 19 6 3.6988 -5.3355 3.0144 20 6 4.7222 -6.2637 3.2725 21 6 5.4169 -6.8056 2.2353 22 6 5.1298 -6.4541 0.9175 23 6 4.1458 -5.5591 0.6295 24 6 3.4065 -4.9783 1.6741 25 1 -0.4850 0.8401 0.0004 26 1 0.3554 -2.3881 -0.0005 27 1 1.0958 -6.6317 -1.1614 28 1 0.9036 -2.7943 2.2524 29 1 1.4106 -3.4132 4.5757 30 1 3.1747 -5.0140 5.0850 31 1 4.9566 -6.5447 4.2886 32 1 6.2031 -7.5183 2.4364 33 1 5.6966 -6.8987 0.1128 34 1 3.9342 -5.2966 -0.3966 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601074809.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:27 Heat of formation + Delta-G solvation = -29.364618 kcal Electronic energy + Delta-G solvation = -20387.166335 eV Core-core repulsion = 17250.209084 eV Total energy + Delta-G solvation = -3136.957251 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.42623 -39.41523 -36.48326 -35.69544 -34.79267 -32.73706 -30.89359 -29.94232 -28.66883 -26.76431 -23.54981 -23.05941 -22.41010 -21.72900 -19.80586 -18.01491 -17.23808 -17.07306 -16.83087 -15.85513 -15.64480 -15.14920 -14.69701 -14.05555 -13.89246 -13.49376 -13.26877 -13.18571 -12.92023 -12.87004 -12.41043 -11.83692 -11.48813 -11.12763 -11.08079 -11.00515 -10.93900 -10.55835 -10.51983 -10.21475 -10.16564 -9.85985 -9.35613 -9.13266 -8.22519 -7.49502 -7.21175 -5.90282 -3.24475 0.86834 1.39889 2.37531 2.73531 3.29883 3.38090 3.42892 3.45594 3.59238 4.46208 4.53418 4.88784 5.07148 5.17457 5.28926 5.33977 5.43725 5.50926 5.59797 5.70270 5.81874 5.90236 5.95344 6.00170 6.14807 6.33441 6.47591 6.57544 6.67806 6.75059 6.88393 6.96096 7.15769 7.23707 7.43232 7.58983 8.22615 8.38031 9.38090 9.83028 10.22061 11.30505 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.018343 B = 0.006558 C = 0.005795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.097437 B = 4268.863986 C = 4830.742744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.001 4.001 3 Si 0.911 3.089 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.254 4.254 8 H 0.076 0.924 9 N -0.698 5.698 10 C 0.225 3.775 11 H 0.098 0.902 12 C 0.472 3.528 13 O -0.503 6.503 14 O -0.517 6.517 15 C -0.087 4.087 16 C -0.080 4.080 17 C -0.110 4.110 18 C -0.122 4.122 19 C -0.056 4.056 20 C -0.112 4.112 21 C -0.124 4.124 22 C -0.131 4.131 23 C -0.083 4.083 24 C -0.037 4.037 25 H 0.259 0.741 26 H 0.398 0.602 27 H 0.398 0.602 28 H 0.140 0.860 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.034 -13.563 4.798 16.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.199 4.199 3 Si 0.741 3.259 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.384 4.384 8 H 0.094 0.906 9 N -0.341 5.341 10 C 0.111 3.889 11 H 0.115 0.885 12 C 0.312 3.688 13 O -0.390 6.390 14 O -0.328 6.328 15 C -0.091 4.091 16 C -0.098 4.098 17 C -0.129 4.129 18 C -0.140 4.140 19 C -0.056 4.056 20 C -0.130 4.130 21 C -0.142 4.142 22 C -0.149 4.149 23 C -0.100 4.100 24 C -0.038 4.038 25 H 0.069 0.931 26 H 0.234 0.766 27 H 0.255 0.745 28 H 0.158 0.842 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.056 -13.004 4.832 16.042 hybrid contribution -0.266 0.514 -0.229 0.622 sum 7.790 -12.490 4.604 15.423 Atomic orbital electron populations 1.69711 1.05187 1.26077 1.55664 1.24802 0.95526 0.97870 1.01654 0.86068 0.78909 0.83558 0.77316 1.20276 1.21614 1.21579 1.19230 0.91187 0.83064 1.44902 0.90569 1.42341 1.06629 0.98044 1.87049 1.18550 0.94571 0.84477 0.91282 0.88516 1.24340 0.86474 0.82213 0.75728 1.90693 1.21349 1.81526 1.45384 1.84652 1.51399 1.20867 1.75863 1.20601 0.95464 0.95820 0.97166 1.20982 0.99504 0.98029 0.91285 1.20923 0.97659 0.97381 0.96888 1.20920 0.96900 0.98328 0.97852 1.18032 0.96956 0.97813 0.92841 1.20906 0.96033 0.97220 0.98887 1.20728 1.00032 1.00457 0.92957 1.20733 0.98694 0.99109 0.96346 1.21066 0.94448 0.95782 0.98746 1.17967 0.96276 0.96893 0.92660 0.93143 0.76550 0.74453 0.84240 0.86314 0.86281 0.86294 0.86734 0.86556 0.85441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.14 13.06 55.49 0.72 -26.41 16 2 C 0.00 -0.02 5.50 -17.43 -0.10 -0.12 16 3 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.25 -6.78 9.93 -15.06 -0.15 -6.93 16 8 H 0.08 1.97 7.83 -52.48 -0.41 1.56 16 9 N -0.70 -17.29 3.54 -55.68 -0.20 -17.49 16 10 C 0.22 4.55 2.40 -70.23 -0.17 4.38 16 11 H 0.10 1.88 6.95 -51.93 -0.36 1.52 16 12 C 0.47 8.89 7.65 36.01 0.28 9.17 16 13 O -0.50 -11.18 16.62 -18.75 -0.31 -11.49 16 14 O -0.52 -7.35 11.04 -39.26 -0.43 -7.78 16 15 C -0.09 -1.65 5.04 -104.53 -0.53 -2.17 16 16 C -0.08 -1.54 9.26 -39.93 -0.37 -1.91 16 17 C -0.11 -1.79 9.95 -39.93 -0.40 -2.18 16 18 C -0.12 -1.79 9.77 -39.49 -0.39 -2.18 16 19 C -0.06 -0.88 5.74 -106.83 -0.61 -1.49 16 20 C -0.11 -1.46 9.77 -39.48 -0.39 -1.84 16 21 C -0.12 -1.49 9.95 -39.93 -0.40 -1.89 16 22 C -0.13 -1.66 9.95 -39.93 -0.40 -2.06 16 23 C -0.08 -1.23 8.06 -39.48 -0.32 -1.55 16 24 C -0.04 -0.63 5.63 -106.84 -0.60 -1.23 16 25 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.40 10.83 7.03 -40.82 -0.29 10.55 16 27 H 0.40 3.88 9.10 45.56 0.41 4.29 16 28 H 0.14 3.02 7.06 -52.49 -0.37 2.65 16 29 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 30 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 31 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.11 1.06 8.06 -52.48 -0.42 0.64 16 33 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 34 H 0.13 1.83 5.74 -52.48 -0.30 1.52 16 LS Contribution 296.03 15.07 4.46 4.46 Total: -1.00 -31.73 296.03 -7.88 -39.61 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -2.56 Total: 14.35 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -4.53 Total: -12.01 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: 0.53 Total: -43.90 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.75 Total: -19.27 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.73 -7.88 -39.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074809.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.245 kcal (2) G-P(sol) polarization free energy of solvation -31.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds