Wall clock time and date at job start Mon Mar 30 2020 01:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00210 * 2 1 4 4 H 1.48501 * 109.46723 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47060 * 300.00330 * 3 2 1 6 6 H 1.48501 * 109.46944 * 60.00492 * 3 2 1 7 7 C 1.38813 * 119.99466 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99705 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00341 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99823 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.47895 * 326.54859 * 10 9 7 12 12 C 1.50701 * 109.47019 * 206.54983 * 10 9 7 13 13 O 1.20823 * 120.00056 * 0.02562 * 12 10 9 14 14 O 1.34232 * 120.00094 * 180.02562 * 12 10 9 15 15 C 1.50705 * 109.47263 * 86.55123 * 10 9 7 16 16 C 1.36134 * 120.16818 * 19.48329 * 15 10 9 17 17 C 1.39326 * 120.98707 * 179.97438 * 16 15 10 18 18 C 1.36130 * 120.99077 * 0.02562 * 17 16 15 19 19 C 1.40497 * 119.65097 * 359.97438 * 18 17 16 20 20 C 1.40554 * 121.28791 * 179.97438 * 19 18 17 21 21 C 1.36088 * 119.65059 * 180.02562 * 20 19 18 22 22 C 1.39376 * 120.99917 * 0.02562 * 21 20 19 23 23 C 1.36090 * 120.98936 * 359.96002 * 22 21 20 24 24 C 1.40489 * 120.17417 * 199.46063 * 15 10 9 25 25 H 0.97001 * 119.99691 * 359.97438 * 1 2 3 26 26 H 0.96998 * 119.99809 * 0.02562 * 9 7 2 27 27 H 0.96699 * 117.00056 * 180.02562 * 14 12 10 28 28 H 1.07996 * 119.50343 * 0.02562 * 16 15 10 29 29 H 1.07998 * 119.50905 * 179.97438 * 17 16 15 30 30 H 1.07993 * 120.17704 * 179.72212 * 18 17 16 31 31 H 1.07996 * 120.17324 * 359.97438 * 20 19 18 32 32 H 1.08010 * 119.50036 * 179.97438 * 21 20 19 33 33 H 1.08000 * 119.50805 * 179.97438 * 22 21 20 34 34 H 1.08007 * 120.17100 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3963 1.2126 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0017 11 1 2.9817 -3.5427 -0.5688 12 6 1.2078 -4.7271 -0.6366 13 8 0.1036 -4.4576 -1.0465 14 8 1.6773 -5.9798 -0.7467 15 6 2.3842 -4.0498 1.4162 16 6 1.6895 -3.5072 2.4536 17 6 1.9765 -3.8587 3.7709 18 6 2.9603 -4.7545 4.0589 19 6 3.6988 -5.3355 3.0144 20 6 4.7222 -6.2637 3.2725 21 6 5.4169 -6.8056 2.2353 22 6 5.1298 -6.4541 0.9175 23 6 4.1458 -5.5591 0.6295 24 6 3.4065 -4.9783 1.6741 25 1 -0.4850 0.8401 0.0004 26 1 0.3554 -2.3881 -0.0005 27 1 1.0958 -6.6317 -1.1614 28 1 0.9036 -2.7943 2.2524 29 1 1.4106 -3.4132 4.5757 30 1 3.1747 -5.0140 5.0850 31 1 4.9566 -6.5447 4.2886 32 1 6.2031 -7.5183 2.4364 33 1 5.6966 -6.8987 0.1128 34 1 3.9342 -5.2966 -0.3966 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601074809.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:26 Heat of formation + Delta-G solvation = -49.198914 kcal Electronic energy + Delta-G solvation = -20388.026415 eV Core-core repulsion = 17250.209084 eV Total energy + Delta-G solvation = -3137.817331 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.78177 -40.76007 -37.81094 -37.08245 -36.37776 -34.37098 -32.50990 -31.10391 -30.03587 -28.36837 -25.47037 -24.21275 -23.62446 -23.04489 -21.20640 -19.80460 -18.82518 -18.24228 -18.06036 -17.34865 -17.09724 -16.63041 -16.35799 -15.39585 -15.24703 -15.00641 -14.83299 -14.46147 -14.23299 -14.11998 -13.68756 -13.26869 -13.06018 -12.87349 -12.65805 -12.55199 -12.21100 -12.10209 -11.99058 -11.75692 -11.66714 -11.62640 -11.08522 -10.57484 -9.40305 -9.26236 -8.63298 -8.00500 -5.35503 -0.29075 0.22788 1.11333 1.29381 1.46417 1.47678 1.57856 2.01298 2.28662 2.55841 3.30041 3.32691 3.68481 3.76439 4.02799 4.10021 4.16902 4.28558 4.38813 4.44335 4.50101 4.63990 4.67886 4.77427 4.97996 5.15006 5.36481 5.42522 5.44028 5.50594 5.56944 5.68632 5.74938 5.91431 6.04831 6.16080 6.25461 7.00486 7.24630 7.85524 8.14213 9.22217 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.018343 B = 0.006558 C = 0.005795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.097437 B = 4268.863986 C = 4830.742744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.064 4.064 3 Si 0.977 3.023 4 H -0.263 1.263 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.246 4.246 8 H 0.082 0.918 9 N -0.713 5.713 10 C 0.221 3.779 11 H 0.103 0.897 12 C 0.486 3.514 13 O -0.544 6.544 14 O -0.495 6.495 15 C -0.103 4.103 16 C -0.103 4.103 17 C -0.130 4.130 18 C -0.103 4.103 19 C -0.075 4.075 20 C -0.111 4.111 21 C -0.119 4.119 22 C -0.117 4.117 23 C -0.108 4.108 24 C -0.053 4.053 25 H 0.254 0.746 26 H 0.381 0.619 27 H 0.423 0.577 28 H 0.100 0.900 29 H 0.135 0.865 30 H 0.158 0.842 31 H 0.152 0.848 32 H 0.152 0.848 33 H 0.146 0.854 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.315 -16.055 6.013 20.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.257 4.257 3 Si 0.805 3.195 4 H -0.187 1.187 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.377 4.377 8 H 0.100 0.900 9 N -0.354 5.354 10 C 0.110 3.890 11 H 0.121 0.879 12 C 0.328 3.672 13 O -0.433 6.433 14 O -0.307 6.307 15 C -0.106 4.106 16 C -0.122 4.122 17 C -0.148 4.148 18 C -0.121 4.121 19 C -0.075 4.075 20 C -0.128 4.128 21 C -0.137 4.137 22 C -0.135 4.135 23 C -0.126 4.126 24 C -0.053 4.053 25 H 0.063 0.937 26 H 0.214 0.786 27 H 0.284 0.716 28 H 0.118 0.882 29 H 0.152 0.848 30 H 0.175 0.825 31 H 0.170 0.830 32 H 0.170 0.830 33 H 0.163 0.837 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 11.398 -15.572 6.047 20.223 hybrid contribution -1.128 0.997 -0.573 1.611 sum 10.270 -14.575 5.474 18.651 Atomic orbital electron populations 1.69875 1.06836 1.26362 1.58183 1.25619 0.96295 1.01191 1.02569 0.85035 0.78347 0.79357 0.76734 1.18703 1.21896 1.21825 1.19554 0.91480 0.83996 1.42680 0.89994 1.42350 1.05894 0.99408 1.87787 1.18667 0.94229 0.83492 0.92636 0.87947 1.23874 0.85442 0.83287 0.74621 1.90686 1.22963 1.82485 1.47210 1.84565 1.51271 1.19461 1.75404 1.20333 0.97081 0.97701 0.95500 1.20838 0.99505 0.98432 0.93383 1.21032 0.99190 0.98810 0.95764 1.21328 0.94943 0.96217 0.99603 1.18395 0.98094 0.98773 0.92254 1.21285 0.94669 0.95892 1.00995 1.21202 1.00157 1.00170 0.92169 1.21151 0.97158 0.97205 0.97938 1.21122 0.95853 0.97374 0.98221 1.18097 0.96022 0.96853 0.94335 0.93726 0.78552 0.71621 0.88186 0.84750 0.82478 0.83044 0.82994 0.83653 0.85744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.76 13.06 21.65 0.28 -59.48 16 2 C -0.06 -3.66 5.50 84.86 0.47 -3.19 16 3 Si 0.98 46.06 29.55 68.60 2.03 48.09 16 4 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 5 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 6 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 7 C -0.25 -13.67 9.93 84.03 0.83 -12.84 16 8 H 0.08 4.34 7.83 -2.91 -0.02 4.31 16 9 N -0.71 -37.36 3.54 -330.08 -1.17 -38.53 16 10 C 0.22 9.29 2.40 43.50 0.10 9.40 16 11 H 0.10 4.09 6.95 -2.39 -0.02 4.08 16 12 C 0.49 18.75 7.65 71.24 0.55 19.29 16 13 O -0.54 -25.17 16.62 21.97 0.37 -24.81 16 14 O -0.49 -13.56 11.04 -51.44 -0.57 -14.13 16 15 C -0.10 -4.01 5.04 -19.80 -0.10 -4.11 16 16 C -0.10 -4.18 9.26 22.04 0.20 -3.98 16 17 C -0.13 -4.20 9.95 22.04 0.22 -3.98 16 18 C -0.10 -2.78 9.77 22.33 0.22 -2.56 16 19 C -0.08 -2.13 5.74 -21.29 -0.12 -2.25 16 20 C -0.11 -2.32 9.77 22.33 0.22 -2.11 16 21 C -0.12 -2.22 9.95 22.04 0.22 -2.00 16 22 C -0.12 -2.47 9.95 22.04 0.22 -2.25 16 23 C -0.11 -2.98 8.06 22.33 0.18 -2.80 16 24 C -0.05 -1.72 5.63 -21.30 -0.12 -1.84 16 25 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 26 H 0.38 22.29 7.03 -92.71 -0.65 21.63 16 27 H 0.42 7.48 9.10 -74.06 -0.67 6.80 16 28 H 0.10 4.77 7.06 -2.91 -0.02 4.75 16 29 H 0.13 3.74 8.06 -2.91 -0.02 3.71 16 30 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 31 H 0.15 2.19 8.06 -2.91 -0.02 2.16 16 32 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 33 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 34 H 0.12 3.40 5.74 -2.91 -0.02 3.39 16 Total: -1.00 -72.74 296.03 3.86 -68.89 By element: Atomic # 1 Polarization: 35.35 SS G_CDS: -0.17 Total: 35.18 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: 3.09 Total: -15.21 kcal Atomic # 7 Polarization: -97.12 SS G_CDS: -0.89 Total: -98.01 kcal Atomic # 8 Polarization: -38.73 SS G_CDS: -0.20 Total: -38.93 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -72.74 3.86 -68.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074809.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.686 kcal (2) G-P(sol) polarization free energy of solvation -72.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds