Wall clock time and date at job start Mon Mar 30 2020 00:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86798 * 120.00043 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99997 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99990 * 3 2 1 7 7 C 1.38751 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99894 * 179.97438 * 7 2 1 9 9 O 1.34923 * 119.99775 * 0.02562 * 7 2 1 10 10 C 1.34313 * 116.99743 * 179.97438 * 9 7 2 11 11 O 1.21209 * 120.00201 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99940 * 180.02562 * 10 9 7 13 13 N 1.46498 * 109.47375 * 179.97438 * 12 10 9 14 14 C 1.45753 * 117.94355 * 269.73636 * 13 12 10 15 15 C 1.52747 * 110.58652 * 198.89037 * 14 13 12 16 16 C 1.53344 * 108.81875 * 309.61094 * 15 14 13 17 17 C 1.53063 * 108.42407 * 67.37146 * 16 15 14 18 18 H 1.08999 * 109.40382 * 71.22686 * 17 16 15 19 19 C 1.50703 * 109.32957 * 191.01463 * 17 16 15 20 20 O 1.20825 * 119.99958 * 0.38451 * 19 17 16 21 21 O 1.34229 * 120.00325 * 180.38633 * 19 17 16 22 22 C 1.33346 * 117.95048 * 89.99638 * 13 12 10 23 23 O 1.21289 * 118.24508 * 357.75659 * 22 13 12 24 24 H 0.96998 * 120.00069 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47160 * 299.99718 * 12 10 9 26 26 H 1.09003 * 109.47502 * 59.99504 * 12 10 9 27 27 H 1.09001 * 109.30224 * 319.37930 * 14 13 12 28 28 H 1.08999 * 109.30211 * 78.76277 * 14 13 12 29 29 H 1.09003 * 109.66136 * 189.72636 * 15 14 13 30 30 H 1.09008 * 109.52896 * 69.41394 * 15 14 13 31 31 H 1.09003 * 109.67359 * 307.63425 * 16 15 14 32 32 H 1.09003 * 109.67162 * 187.10180 * 16 15 14 33 33 H 0.96696 * 117.00492 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 1.2834 2.7465 -0.0006 5 1 3.1022 1.6964 -1.2125 6 1 3.1022 1.6964 1.2125 7 6 2.0082 -1.2016 0.0005 8 1 3.0882 -1.2016 0.0001 9 8 1.3336 -2.3701 0.0005 10 6 2.0651 -3.4965 0.0005 11 8 3.2755 -3.4331 0.0001 12 6 1.3810 -4.8392 0.0000 13 7 2.3899 -5.9014 -0.0005 14 6 2.8560 -6.4001 -1.2884 15 6 3.5173 -7.7675 -1.1274 16 6 4.5538 -7.6861 -0.0002 17 6 3.8141 -7.4716 1.3226 18 1 3.2915 -8.3877 1.5979 19 6 4.8085 -7.1197 2.3989 20 8 5.9845 -7.0415 2.1326 21 8 4.3880 -6.8932 3.6533 22 6 2.8205 -6.3550 1.1772 23 8 2.3866 -5.8379 2.1849 24 1 -0.4850 -0.8400 0.0004 25 1 0.7579 -4.9299 0.8897 26 1 0.7584 -4.9295 -0.8902 27 1 2.0093 -6.4855 -1.9695 28 1 3.5805 -5.7003 -1.7049 29 1 4.0104 -8.0484 -2.0581 30 1 2.7607 -8.5108 -0.8756 31 1 5.2294 -6.8504 -0.1826 32 1 5.1220 -8.6153 0.0436 33 1 5.0627 -6.6704 4.3091 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608187817.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:46 Heat of formation + Delta-G solvation = -204.102170 kcal Electronic energy + Delta-G solvation = -21367.173781 eV Core-core repulsion = 17779.497326 eV Total energy + Delta-G solvation = -3587.676455 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.098 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.20541 -39.78756 -38.74799 -36.73592 -36.04213 -35.40482 -33.97400 -32.09000 -30.36993 -28.17758 -25.69262 -24.62391 -22.61758 -22.00839 -20.53283 -18.70604 -18.29238 -18.00318 -17.22997 -16.94900 -16.64844 -16.36056 -15.30991 -14.94170 -14.82556 -14.61291 -14.19214 -13.77503 -13.69867 -13.64288 -13.27707 -12.62778 -12.18021 -12.06575 -11.68009 -11.56702 -11.41721 -11.24121 -11.00766 -10.90050 -10.69690 -10.38931 -10.22612 -9.74390 -9.72942 -9.40237 -8.54896 -8.50974 -6.72505 -4.09265 1.91818 2.49436 2.89120 3.05534 3.22894 3.31253 3.51605 3.53581 4.07079 4.19728 4.34166 4.48666 4.57218 4.62005 4.94184 5.11064 5.16942 5.21160 5.37641 5.42159 5.54082 5.60950 5.73440 5.75257 5.99564 6.16748 6.42947 6.61893 7.37357 7.63313 7.82606 8.10923 8.43647 8.51805 9.07376 9.74413 10.72426 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.025315 B = 0.005014 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.784358 B = 5582.937985 C = 5986.807622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.013 3.987 3 Si 1.099 2.901 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.461 4.461 8 H 0.085 0.915 9 O -0.237 6.237 10 C 0.386 3.614 11 O -0.544 6.544 12 C 0.127 3.873 13 N -0.577 5.577 14 C 0.107 3.893 15 C -0.131 4.131 16 C -0.111 4.111 17 C -0.093 4.093 18 H 0.139 0.861 19 C 0.501 3.499 20 O -0.510 6.510 21 O -0.493 6.493 22 C 0.525 3.475 23 O -0.520 6.520 24 H 0.280 0.720 25 H 0.117 0.883 26 H 0.109 0.891 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.551 -17.993 -1.483 18.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.192 4.192 3 Si 0.923 3.077 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.537 4.537 8 H 0.103 0.897 9 O -0.145 6.145 10 C 0.231 3.769 11 O -0.440 6.440 12 C 0.002 3.998 13 N -0.310 5.310 14 C -0.016 4.016 15 C -0.169 4.169 16 C -0.149 4.149 17 C -0.115 4.115 18 H 0.157 0.843 19 C 0.342 3.658 20 O -0.399 6.399 21 O -0.302 6.302 22 C 0.311 3.689 23 O -0.396 6.396 24 H 0.090 0.910 25 H 0.135 0.865 26 H 0.127 0.873 27 H 0.100 0.900 28 H 0.093 0.907 29 H 0.112 0.888 30 H 0.094 0.906 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 4.442 -16.094 -1.311 16.747 hybrid contribution 0.772 -1.589 0.377 1.806 sum 5.213 -17.683 -0.934 18.459 Atomic orbital electron populations 1.70556 1.06543 1.31451 1.43088 1.26594 0.96780 1.01095 0.94702 0.83078 0.74374 0.73049 0.77234 1.19833 1.20770 1.20760 1.22073 0.93684 0.81176 1.56759 0.89689 1.83585 1.40416 1.14115 1.76377 1.23379 0.87138 0.87074 0.79313 1.90558 1.15535 1.87704 1.50189 1.20765 0.89925 0.83154 1.05930 1.46772 1.42167 1.36132 1.05964 1.21526 1.00115 0.95540 0.84389 1.21855 0.98521 0.96648 0.99828 1.21643 0.97958 1.04780 0.90493 1.21082 0.95398 1.00532 0.94478 0.84314 1.22480 0.87872 0.72568 0.82877 1.90726 1.18867 1.47834 1.82443 1.84635 1.45232 1.80748 1.19634 1.19202 0.82328 0.83838 0.83544 1.90826 1.56179 1.57323 1.35242 0.91010 0.86549 0.87274 0.89962 0.90676 0.88769 0.90589 0.89346 0.89607 0.73244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.70 13.69 55.48 0.76 -25.94 16 2 C 0.01 0.39 5.49 -17.53 -0.10 0.29 16 3 Si 1.10 25.23 29.92 -169.99 -5.09 20.15 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.46 -14.11 9.64 30.92 0.30 -13.82 16 8 H 0.09 2.68 6.86 -52.49 -0.36 2.32 16 9 O -0.24 -6.85 9.15 -20.72 -0.19 -7.04 16 10 C 0.39 9.72 7.96 36.00 0.29 10.01 16 11 O -0.54 -15.19 15.66 -19.05 -0.30 -15.49 16 12 C 0.13 2.28 5.79 -5.20 -0.03 2.25 16 13 N -0.58 -9.08 2.31 -176.44 -0.41 -9.49 16 14 C 0.11 1.22 6.38 -4.57 -0.03 1.19 16 15 C -0.13 -1.04 6.01 -26.68 -0.16 -1.20 16 16 C -0.11 -1.13 4.78 -26.52 -0.13 -1.26 16 17 C -0.09 -1.16 2.87 -93.14 -0.27 -1.42 16 18 H 0.14 1.23 8.14 -51.93 -0.42 0.81 16 19 C 0.50 7.27 7.51 36.01 0.27 7.55 16 20 O -0.51 -8.37 16.54 -18.75 -0.31 -8.68 16 21 O -0.49 -6.62 12.39 -45.23 -0.56 -7.18 16 22 C 0.53 8.78 7.01 -11.87 -0.08 8.69 16 23 O -0.52 -10.83 14.86 -11.60 -0.17 -11.00 16 24 H 0.28 8.51 7.97 -40.82 -0.33 8.18 16 25 H 0.12 2.11 7.21 -51.93 -0.37 1.74 16 26 H 0.11 1.55 7.86 -51.93 -0.41 1.14 16 27 H 0.08 0.73 7.92 -51.93 -0.41 0.31 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.48 8.13 -51.92 -0.42 0.05 16 31 H 0.09 1.14 7.72 -51.93 -0.40 0.74 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.41 3.58 9.10 45.56 0.41 4.00 16 LS Contribution 294.60 15.07 4.44 4.44 Total: -1.00 -40.39 294.60 -4.53 -44.92 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -2.77 Total: 3.03 kcal Atomic # 6 Polarization: 12.22 SS G_CDS: 0.06 Total: 12.28 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: 0.35 Total: -35.43 kcal Atomic # 8 Polarization: -47.86 SS G_CDS: -1.53 Total: -49.39 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -5.09 Total: 20.15 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -40.39 -4.53 -44.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608187817.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.183 kcal (2) G-P(sol) polarization free energy of solvation -40.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds