Wall clock time and date at job start Mon Mar 30 2020 00:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86798 * 120.00043 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99997 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99990 * 3 2 1 7 7 C 1.38751 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99894 * 179.97438 * 7 2 1 9 9 O 1.34923 * 119.99775 * 0.02562 * 7 2 1 10 10 C 1.34313 * 116.99743 * 179.97438 * 9 7 2 11 11 O 1.21209 * 120.00201 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99940 * 180.02562 * 10 9 7 13 13 N 1.46498 * 109.47375 * 179.97438 * 12 10 9 14 14 C 1.45753 * 117.94355 * 269.73636 * 13 12 10 15 15 C 1.52747 * 110.58652 * 198.89037 * 14 13 12 16 16 C 1.53344 * 108.81875 * 309.61094 * 15 14 13 17 17 C 1.53063 * 108.42407 * 67.37146 * 16 15 14 18 18 H 1.08999 * 109.40382 * 71.22686 * 17 16 15 19 19 C 1.50703 * 109.32957 * 191.01463 * 17 16 15 20 20 O 1.20825 * 119.99958 * 0.38451 * 19 17 16 21 21 O 1.34229 * 120.00325 * 180.38633 * 19 17 16 22 22 C 1.33346 * 117.95048 * 89.99638 * 13 12 10 23 23 O 1.21289 * 118.24508 * 357.75659 * 22 13 12 24 24 H 0.96998 * 120.00069 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47160 * 299.99718 * 12 10 9 26 26 H 1.09003 * 109.47502 * 59.99504 * 12 10 9 27 27 H 1.09001 * 109.30224 * 319.37930 * 14 13 12 28 28 H 1.08999 * 109.30211 * 78.76277 * 14 13 12 29 29 H 1.09003 * 109.66136 * 189.72636 * 15 14 13 30 30 H 1.09008 * 109.52896 * 69.41394 * 15 14 13 31 31 H 1.09003 * 109.67359 * 307.63425 * 16 15 14 32 32 H 1.09003 * 109.67162 * 187.10180 * 16 15 14 33 33 H 0.96696 * 117.00492 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 1.2834 2.7465 -0.0006 5 1 3.1022 1.6964 -1.2125 6 1 3.1022 1.6964 1.2125 7 6 2.0082 -1.2016 0.0005 8 1 3.0882 -1.2016 0.0001 9 8 1.3336 -2.3701 0.0005 10 6 2.0651 -3.4965 0.0005 11 8 3.2755 -3.4331 0.0001 12 6 1.3810 -4.8392 0.0000 13 7 2.3899 -5.9014 -0.0005 14 6 2.8560 -6.4001 -1.2884 15 6 3.5173 -7.7675 -1.1274 16 6 4.5538 -7.6861 -0.0002 17 6 3.8141 -7.4716 1.3226 18 1 3.2915 -8.3877 1.5979 19 6 4.8085 -7.1197 2.3989 20 8 5.9845 -7.0415 2.1326 21 8 4.3880 -6.8932 3.6533 22 6 2.8205 -6.3550 1.1772 23 8 2.3866 -5.8379 2.1849 24 1 -0.4850 -0.8400 0.0004 25 1 0.7579 -4.9299 0.8897 26 1 0.7584 -4.9295 -0.8902 27 1 2.0093 -6.4855 -1.9695 28 1 3.5805 -5.7003 -1.7049 29 1 4.0104 -8.0484 -2.0581 30 1 2.7607 -8.5108 -0.8756 31 1 5.2294 -6.8504 -0.1826 32 1 5.1220 -8.6153 0.0436 33 1 5.0627 -6.6704 4.3091 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608187817.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:46 Heat of formation + Delta-G solvation = -234.376297 kcal Electronic energy + Delta-G solvation = -21368.486565 eV Core-core repulsion = 17779.497326 eV Total energy + Delta-G solvation = -3588.989239 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.098 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.40912 -41.28797 -40.52654 -37.92582 -37.52628 -37.08134 -35.24730 -34.33743 -31.37712 -29.68714 -26.89982 -26.58108 -23.81531 -23.14133 -22.22401 -20.23078 -19.80983 -19.40915 -18.69500 -18.36523 -17.99465 -17.71521 -17.10700 -16.74578 -16.12800 -16.08686 -15.59636 -15.34054 -14.95322 -14.58245 -14.44273 -14.31129 -13.70862 -13.11375 -13.08860 -12.93613 -12.69867 -12.51322 -12.38188 -12.31776 -12.01820 -11.96173 -11.93703 -11.79956 -11.33483 -10.97211 -10.71793 -9.99699 -9.07347 -6.47354 0.74504 1.25208 1.30498 1.44731 1.64941 1.69151 1.78106 2.02293 2.25570 2.70190 2.93837 3.22408 3.39630 3.71226 3.84594 4.04852 4.12327 4.23725 4.27558 4.32451 4.49844 4.59418 4.75363 4.93919 5.02838 5.14662 5.23980 5.26986 5.42834 6.11922 6.17428 6.33630 6.81431 6.82599 6.85846 7.53601 8.39234 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.025315 B = 0.005014 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.784358 B = 5582.937985 C = 5986.807622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C -0.024 4.024 3 Si 1.143 2.857 4 H -0.258 1.258 5 H -0.262 1.262 6 H -0.271 1.271 7 C -0.495 4.495 8 H 0.065 0.935 9 O -0.262 6.262 10 C 0.385 3.615 11 O -0.577 6.577 12 C 0.135 3.865 13 N -0.576 5.576 14 C 0.094 3.906 15 C -0.117 4.117 16 C -0.109 4.109 17 C -0.088 4.088 18 H 0.183 0.817 19 C 0.495 3.505 20 O -0.536 6.536 21 O -0.500 6.500 22 C 0.515 3.485 23 O -0.572 6.572 24 H 0.268 0.732 25 H 0.117 0.883 26 H 0.157 0.843 27 H 0.117 0.883 28 H 0.048 0.952 29 H 0.125 0.875 30 H 0.107 0.893 31 H 0.052 0.948 32 H 0.115 0.885 33 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.490 -19.775 -2.617 20.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.223 4.223 3 Si 0.958 3.042 4 H -0.182 1.182 5 H -0.187 1.187 6 H -0.196 1.196 7 C -0.570 4.570 8 H 0.082 0.918 9 O -0.171 6.171 10 C 0.231 3.769 11 O -0.473 6.473 12 C 0.010 3.990 13 N -0.308 5.308 14 C -0.027 4.027 15 C -0.154 4.154 16 C -0.147 4.147 17 C -0.109 4.109 18 H 0.200 0.800 19 C 0.337 3.663 20 O -0.427 6.427 21 O -0.312 6.312 22 C 0.303 3.697 23 O -0.451 6.451 24 H 0.077 0.923 25 H 0.135 0.865 26 H 0.174 0.826 27 H 0.135 0.865 28 H 0.066 0.934 29 H 0.143 0.857 30 H 0.125 0.875 31 H 0.071 0.929 32 H 0.134 0.866 33 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 4.386 -17.929 -2.467 18.622 hybrid contribution 0.835 -1.141 0.766 1.608 sum 5.221 -19.070 -1.701 19.845 Atomic orbital electron populations 1.70672 1.07171 1.30673 1.44473 1.28348 0.96914 1.04264 0.92811 0.82628 0.73921 0.69183 0.78459 1.18217 1.18704 1.19601 1.22188 0.93092 0.82787 1.58972 0.91760 1.83626 1.41068 1.14746 1.77637 1.24999 0.87156 0.88425 0.76319 1.90529 1.17369 1.88390 1.51062 1.20912 0.90333 0.79629 1.08109 1.47047 1.41459 1.34752 1.07496 1.21935 1.01148 0.96887 0.82707 1.21905 0.98409 0.94877 1.00242 1.21709 0.98172 1.04747 0.90036 1.21282 0.94335 1.00229 0.95041 0.80045 1.22985 0.87992 0.71894 0.83416 1.90711 1.20030 1.49048 1.82882 1.84622 1.46239 1.80397 1.19986 1.20030 0.82240 0.84351 0.83041 1.90799 1.58000 1.59323 1.36996 0.92313 0.86523 0.82589 0.86536 0.93351 0.85708 0.87485 0.92883 0.86628 0.71400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.88 13.69 21.62 0.30 -54.58 16 2 C -0.02 -1.42 5.49 84.87 0.47 -0.95 16 3 Si 1.14 50.48 29.92 68.60 2.05 52.53 16 4 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 5 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 6 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.49 -31.25 9.64 67.94 0.66 -30.60 16 8 H 0.06 4.23 6.86 -2.91 -0.02 4.21 16 9 O -0.26 -15.60 9.15 14.81 0.14 -15.46 16 10 C 0.38 19.78 7.96 71.23 0.57 20.35 16 11 O -0.58 -33.27 15.66 20.78 0.33 -32.95 16 12 C 0.14 4.76 5.79 85.63 0.50 5.25 16 13 N -0.58 -17.26 2.31 -831.33 -1.92 -19.17 16 14 C 0.09 1.89 6.38 86.44 0.55 2.44 16 15 C -0.12 -1.34 6.01 30.63 0.18 -1.16 16 16 C -0.11 -1.93 4.78 30.73 0.15 -1.78 16 17 C -0.09 -2.00 2.87 -12.43 -0.04 -2.03 16 18 H 0.18 2.52 8.14 -2.39 -0.02 2.50 16 19 C 0.49 14.07 7.51 71.24 0.54 14.60 16 20 O -0.54 -17.52 16.54 21.97 0.36 -17.16 16 21 O -0.50 -13.35 12.39 -45.69 -0.57 -13.92 16 22 C 0.52 16.74 7.01 87.71 0.61 17.35 16 23 O -0.57 -24.00 14.86 13.34 0.20 -23.80 16 24 H 0.27 16.68 7.97 -92.71 -0.74 15.94 16 25 H 0.12 4.19 7.21 -2.39 -0.02 4.17 16 26 H 0.16 4.01 7.86 -2.39 -0.02 3.99 16 27 H 0.12 1.56 7.92 -2.39 -0.02 1.54 16 28 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.11 0.68 8.13 -2.38 -0.02 0.66 16 31 H 0.05 1.33 7.72 -2.39 -0.02 1.31 16 32 H 0.12 1.39 8.14 -2.39 -0.02 1.38 16 33 H 0.42 7.47 9.10 -74.06 -0.67 6.80 16 Total: -1.00 -92.86 294.60 5.59 -87.27 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.52 Total: 13.77 kcal Atomic # 6 Polarization: 19.29 SS G_CDS: 4.18 Total: 23.47 kcal Atomic # 7 Polarization: -72.14 SS G_CDS: -1.62 Total: -73.76 kcal Atomic # 8 Polarization: -103.74 SS G_CDS: 0.46 Total: -103.29 kcal Atomic # 14 Polarization: 50.48 SS G_CDS: 2.05 Total: 52.53 kcal Total: -92.86 5.59 -87.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608187817.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.104 kcal (2) G-P(sol) polarization free energy of solvation -92.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds