Wall clock time and date at job start Mon Mar 30 2020 00:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31436 * 1 3 3 Si 1.86794 * 120.00396 * 2 1 4 4 H 1.48499 * 109.47090 * 270.00301 * 3 2 1 5 5 H 1.48499 * 109.46999 * 30.00104 * 3 2 1 6 6 H 1.48493 * 109.47445 * 149.99939 * 3 2 1 7 7 C 1.38758 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00321 * 179.97438 * 7 2 1 9 9 O 1.34925 * 120.00110 * 359.97438 * 7 2 1 10 10 C 1.34311 * 116.99746 * 179.97438 * 9 7 2 11 11 O 1.21210 * 120.00563 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99794 * 179.97438 * 10 9 7 13 13 N 1.46494 * 109.47329 * 179.97438 * 12 10 9 14 14 C 1.45748 * 117.94783 * 270.02451 * 13 12 10 15 15 C 1.52922 * 110.48730 * 160.90234 * 14 13 12 16 16 C 1.53299 * 108.61051 * 50.76615 * 15 14 13 17 17 C 1.53065 * 108.44342 * 292.36053 * 16 15 14 18 18 H 1.09003 * 109.40590 * 288.94312 * 17 16 15 19 19 C 1.50706 * 109.40004 * 169.11803 * 17 16 15 20 20 O 1.20825 * 119.99819 * 359.82591 * 19 17 16 21 21 O 1.34226 * 119.99822 * 179.83327 * 19 17 16 22 22 C 1.33353 * 117.94314 * 89.99983 * 13 12 10 23 23 O 1.21278 * 118.25084 * 2.24632 * 22 13 12 24 24 H 0.97006 * 120.00195 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46872 * 60.00025 * 12 10 9 26 26 H 1.09007 * 109.46988 * 300.00380 * 12 10 9 27 27 H 1.09001 * 109.29666 * 281.20865 * 14 13 12 28 28 H 1.08992 * 109.30443 * 40.59125 * 14 13 12 29 29 H 1.09003 * 109.60716 * 170.50502 * 15 14 13 30 30 H 1.08994 * 109.60392 * 290.99484 * 15 14 13 31 31 H 1.09007 * 109.58915 * 172.66349 * 16 15 14 32 32 H 1.08995 * 109.73320 * 52.14564 * 16 15 14 33 33 H 0.96702 * 116.99802 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6176 0.0000 4 1 2.4959 2.0463 -1.4001 5 1 1.4460 2.6526 0.7001 6 1 3.5459 1.4401 0.7000 7 6 2.0081 -1.2017 0.0005 8 1 3.0881 -1.2018 0.0001 9 8 1.3335 -2.3702 0.0016 10 6 2.0650 -3.4966 0.0015 11 8 3.2754 -3.4332 0.0001 12 6 1.3808 -4.8394 0.0032 13 7 2.3897 -5.9015 0.0022 14 6 2.8585 -6.3971 -1.2858 15 6 4.1948 -7.1231 -1.1257 16 6 4.0600 -8.1531 0.0017 17 6 3.8868 -7.4030 1.3247 18 1 4.8289 -6.9272 1.5973 19 6 3.4872 -8.3764 2.4035 20 8 3.3517 -9.5478 2.1402 21 8 3.2816 -7.9421 3.6568 22 6 2.8218 -6.3540 1.1798 23 8 2.3288 -5.8937 2.1877 24 1 -0.4851 0.8401 0.0004 25 1 0.7570 -4.9304 -0.8860 26 1 0.7589 -4.9292 0.8940 27 1 2.1209 -7.0864 -1.6967 28 1 2.9840 -5.5584 -1.9705 29 1 4.4492 -7.6305 -2.0563 30 1 4.9739 -6.4038 -0.8737 31 1 4.9586 -8.7687 0.0438 32 1 3.1901 -8.7845 -0.1787 33 1 3.0264 -8.6036 4.3144 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608187818.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:48 Heat of formation + Delta-G solvation = -198.440787 kcal Electronic energy + Delta-G solvation = -21213.243787 eV Core-core repulsion = 17625.812829 eV Total energy + Delta-G solvation = -3587.430959 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.098 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.19207 -39.79078 -38.65110 -36.70671 -36.05503 -35.26314 -33.91016 -32.13435 -30.29774 -28.14314 -25.68575 -25.06582 -22.59043 -22.00917 -20.24060 -18.70918 -18.33442 -17.73669 -17.22953 -16.87596 -16.62568 -16.33612 -15.18819 -15.08745 -14.58648 -14.39821 -14.21693 -13.86264 -13.76542 -13.56022 -13.24827 -12.27325 -12.10701 -12.02416 -11.66263 -11.60985 -11.55666 -11.35624 -11.18131 -11.09396 -10.74780 -10.43588 -10.35706 -9.83916 -9.65383 -9.33131 -8.57017 -8.50302 -6.39956 -4.07849 1.91756 2.47254 2.83470 3.11275 3.18150 3.20194 3.26468 3.51852 3.98622 4.24083 4.37126 4.57991 4.62891 4.71256 5.05180 5.12409 5.16863 5.24834 5.44349 5.53463 5.58774 5.65469 5.75100 5.88453 6.03897 6.25903 6.35676 6.76690 7.39610 7.44500 7.77526 7.95923 8.17485 8.71005 9.08646 9.84672 10.77901 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.032446 B = 0.004509 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.773428 B = 6208.475014 C = 6535.764158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.042 3.958 3 Si 0.943 3.057 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.380 4.380 8 H 0.094 0.906 9 O -0.214 6.214 10 C 0.384 3.616 11 O -0.551 6.551 12 C 0.124 3.876 13 N -0.578 5.578 14 C 0.111 3.889 15 C -0.134 4.134 16 C -0.107 4.107 17 C -0.097 4.097 18 H 0.142 0.858 19 C 0.502 3.498 20 O -0.516 6.516 21 O -0.490 6.490 22 C 0.527 3.473 23 O -0.522 6.522 24 H 0.269 0.731 25 H 0.110 0.890 26 H 0.118 0.882 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.831 -15.807 -1.478 16.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.162 4.162 3 Si 0.768 3.232 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.457 4.457 8 H 0.112 0.888 9 O -0.120 6.120 10 C 0.229 3.771 11 O -0.448 6.448 12 C 0.000 4.000 13 N -0.310 5.310 14 C -0.012 4.012 15 C -0.172 4.172 16 C -0.145 4.145 17 C -0.119 4.119 18 H 0.159 0.841 19 C 0.344 3.656 20 O -0.405 6.405 21 O -0.299 6.299 22 C 0.313 3.687 23 O -0.397 6.397 24 H 0.079 0.921 25 H 0.128 0.872 26 H 0.136 0.864 27 H 0.088 0.912 28 H 0.102 0.898 29 H 0.111 0.889 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 5.774 -15.401 -1.301 16.499 hybrid contribution 0.376 0.474 0.374 0.711 sum 6.151 -14.926 -0.927 16.170 Atomic orbital electron populations 1.69990 1.05981 1.27674 1.46557 1.25326 0.95815 0.98817 0.96218 0.85676 0.79074 0.79803 0.78651 1.19915 1.20301 1.19150 1.21194 0.92310 0.79772 1.52401 0.88795 1.83864 1.39313 1.13304 1.75521 1.23504 0.87101 0.87523 0.78952 1.90537 1.15591 1.87922 1.50722 1.20772 0.90011 0.83045 1.06153 1.46805 1.41851 1.36490 1.05897 1.21501 0.95788 0.99161 0.84711 1.21893 0.97667 0.98226 0.99426 1.21615 1.04585 0.97617 0.90664 1.21138 1.01465 0.95029 0.94228 0.84075 1.22573 0.72647 0.87447 0.82935 1.90712 1.48201 1.18858 1.82687 1.84697 1.80044 1.45621 1.19567 1.19152 0.83038 0.82936 0.83585 1.90816 1.55834 1.57956 1.35137 0.92074 0.87215 0.86404 0.91176 0.89786 0.88918 0.90044 0.89702 0.89753 0.73399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.49 13.67 55.48 0.76 -24.74 16 2 C 0.04 1.20 5.49 -17.53 -0.10 1.10 16 3 Si 0.94 21.48 29.55 -169.99 -5.02 16.46 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.38 -11.36 9.65 30.92 0.30 -11.06 16 8 H 0.09 2.83 6.86 -52.49 -0.36 2.47 16 9 O -0.21 -6.15 9.75 -20.72 -0.20 -6.35 16 10 C 0.38 9.47 7.96 36.01 0.29 9.76 16 11 O -0.55 -14.64 15.66 -19.05 -0.30 -14.94 16 12 C 0.12 2.27 5.81 -5.19 -0.03 2.24 16 13 N -0.58 -9.15 2.30 -176.34 -0.41 -9.56 16 14 C 0.11 1.28 6.32 -4.49 -0.03 1.25 16 15 C -0.13 -1.23 6.02 -26.62 -0.16 -1.39 16 16 C -0.11 -1.03 4.77 -26.54 -0.13 -1.16 16 17 C -0.10 -1.22 2.86 -93.14 -0.27 -1.49 16 18 H 0.14 1.60 8.14 -51.93 -0.42 1.18 16 19 C 0.50 6.56 7.52 36.01 0.27 6.83 16 20 O -0.52 -7.29 16.55 -18.75 -0.31 -7.60 16 21 O -0.49 -6.04 12.38 -45.25 -0.56 -6.60 16 22 C 0.53 8.86 7.01 -11.87 -0.08 8.78 16 23 O -0.52 -10.83 14.82 -11.68 -0.17 -11.00 16 24 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 25 H 0.11 1.62 8.01 -51.93 -0.42 1.20 16 26 H 0.12 2.21 7.14 -51.92 -0.37 1.84 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.84 8.12 -51.93 -0.42 0.42 16 31 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 32 H 0.08 0.84 7.72 -51.93 -0.40 0.44 16 33 H 0.41 2.91 9.10 45.56 0.41 3.32 16 LS Contribution 295.34 15.07 4.45 4.45 Total: -1.00 -38.39 295.34 -4.50 -42.89 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -2.80 Total: 2.13 kcal Atomic # 6 Polarization: 14.79 SS G_CDS: 0.06 Total: 14.85 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 0.35 Total: -34.29 kcal Atomic # 8 Polarization: -44.94 SS G_CDS: -1.54 Total: -46.48 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -38.39 -4.50 -42.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608187818.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.554 kcal (2) G-P(sol) polarization free energy of solvation -38.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds