Wall clock time and date at job start Mon Mar 30 2020 00:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31436 * 1 3 3 Si 1.86794 * 120.00396 * 2 1 4 4 H 1.48499 * 109.47090 * 270.00301 * 3 2 1 5 5 H 1.48499 * 109.46999 * 30.00104 * 3 2 1 6 6 H 1.48493 * 109.47445 * 149.99939 * 3 2 1 7 7 C 1.38758 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00321 * 179.97438 * 7 2 1 9 9 O 1.34925 * 120.00110 * 359.97438 * 7 2 1 10 10 C 1.34311 * 116.99746 * 179.97438 * 9 7 2 11 11 O 1.21210 * 120.00563 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99794 * 179.97438 * 10 9 7 13 13 N 1.46494 * 109.47329 * 179.97438 * 12 10 9 14 14 C 1.45748 * 117.94783 * 270.02451 * 13 12 10 15 15 C 1.52922 * 110.48730 * 160.90234 * 14 13 12 16 16 C 1.53299 * 108.61051 * 50.76615 * 15 14 13 17 17 C 1.53065 * 108.44342 * 292.36053 * 16 15 14 18 18 H 1.09003 * 109.40590 * 288.94312 * 17 16 15 19 19 C 1.50706 * 109.40004 * 169.11803 * 17 16 15 20 20 O 1.20825 * 119.99819 * 359.82591 * 19 17 16 21 21 O 1.34226 * 119.99822 * 179.83327 * 19 17 16 22 22 C 1.33353 * 117.94314 * 89.99983 * 13 12 10 23 23 O 1.21278 * 118.25084 * 2.24632 * 22 13 12 24 24 H 0.97006 * 120.00195 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46872 * 60.00025 * 12 10 9 26 26 H 1.09007 * 109.46988 * 300.00380 * 12 10 9 27 27 H 1.09001 * 109.29666 * 281.20865 * 14 13 12 28 28 H 1.08992 * 109.30443 * 40.59125 * 14 13 12 29 29 H 1.09003 * 109.60716 * 170.50502 * 15 14 13 30 30 H 1.08994 * 109.60392 * 290.99484 * 15 14 13 31 31 H 1.09007 * 109.58915 * 172.66349 * 16 15 14 32 32 H 1.08995 * 109.73320 * 52.14564 * 16 15 14 33 33 H 0.96702 * 116.99802 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6176 0.0000 4 1 2.4959 2.0463 -1.4001 5 1 1.4460 2.6526 0.7001 6 1 3.5459 1.4401 0.7000 7 6 2.0081 -1.2017 0.0005 8 1 3.0881 -1.2018 0.0001 9 8 1.3335 -2.3702 0.0016 10 6 2.0650 -3.4966 0.0015 11 8 3.2754 -3.4332 0.0001 12 6 1.3808 -4.8394 0.0032 13 7 2.3897 -5.9015 0.0022 14 6 2.8585 -6.3971 -1.2858 15 6 4.1948 -7.1231 -1.1257 16 6 4.0600 -8.1531 0.0017 17 6 3.8868 -7.4030 1.3247 18 1 4.8289 -6.9272 1.5973 19 6 3.4872 -8.3764 2.4035 20 8 3.3517 -9.5478 2.1402 21 8 3.2816 -7.9421 3.6568 22 6 2.8218 -6.3540 1.1798 23 8 2.3288 -5.8937 2.1877 24 1 -0.4851 0.8401 0.0004 25 1 0.7570 -4.9304 -0.8860 26 1 0.7589 -4.9292 0.8940 27 1 2.1209 -7.0864 -1.6967 28 1 2.9840 -5.5584 -1.9705 29 1 4.4492 -7.6305 -2.0563 30 1 4.9739 -6.4038 -0.8737 31 1 4.9586 -8.7687 0.0438 32 1 3.1901 -8.7845 -0.1787 33 1 3.0264 -8.6036 4.3144 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608187818.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:48 Heat of formation + Delta-G solvation = -226.333754 kcal Electronic energy + Delta-G solvation = -21214.453317 eV Core-core repulsion = 17625.812829 eV Total energy + Delta-G solvation = -3588.640488 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.098 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.35443 -41.17035 -40.41088 -37.85814 -37.35129 -36.97678 -35.17673 -34.31010 -31.32950 -29.67130 -27.23399 -26.56844 -23.76397 -23.07293 -21.91980 -19.94542 -19.74504 -19.35657 -18.73392 -18.25590 -17.88044 -17.59773 -16.82429 -16.63839 -16.23297 -16.09824 -15.51042 -15.24084 -14.79032 -14.54830 -14.33437 -14.12816 -13.63140 -13.61614 -13.04504 -12.91095 -12.63267 -12.49867 -12.32263 -12.30279 -12.19369 -12.05161 -11.98131 -11.74705 -11.22033 -10.92121 -10.70617 -9.92400 -8.54702 -6.34942 0.87419 1.20018 1.29086 1.34923 1.50956 1.62068 1.72688 2.13776 2.15716 2.83028 2.96116 3.26240 3.43931 3.74115 3.89347 4.08415 4.20710 4.30438 4.37731 4.42743 4.51712 4.69275 4.81676 4.96929 5.01063 5.12097 5.21489 5.30426 5.47220 5.81732 6.22800 6.63195 6.88340 6.90281 6.91838 7.73457 8.65706 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.032446 B = 0.004509 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.773428 B = 6208.475014 C = 6535.764158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.003 4.003 3 Si 1.017 2.983 4 H -0.256 1.256 5 H -0.261 1.261 6 H -0.267 1.267 7 C -0.420 4.420 8 H 0.079 0.921 9 O -0.244 6.244 10 C 0.383 3.617 11 O -0.574 6.574 12 C 0.133 3.867 13 N -0.577 5.577 14 C 0.098 3.902 15 C -0.127 4.127 16 C -0.098 4.098 17 C -0.095 4.095 18 H 0.152 0.848 19 C 0.506 3.494 20 O -0.527 6.527 21 O -0.502 6.502 22 C 0.517 3.483 23 O -0.572 6.572 24 H 0.279 0.721 25 H 0.150 0.850 26 H 0.112 0.888 27 H 0.105 0.895 28 H 0.074 0.926 29 H 0.131 0.869 30 H 0.067 0.933 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.664 -16.626 -2.604 18.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.204 4.204 3 Si 0.836 3.164 4 H -0.180 1.180 5 H -0.185 1.185 6 H -0.191 1.191 7 C -0.496 4.496 8 H 0.097 0.903 9 O -0.152 6.152 10 C 0.229 3.771 11 O -0.471 6.471 12 C 0.008 3.992 13 N -0.308 5.308 14 C -0.023 4.023 15 C -0.164 4.164 16 C -0.136 4.136 17 C -0.116 4.116 18 H 0.170 0.830 19 C 0.348 3.652 20 O -0.417 6.417 21 O -0.314 6.314 22 C 0.305 3.695 23 O -0.452 6.452 24 H 0.088 0.912 25 H 0.168 0.832 26 H 0.130 0.870 27 H 0.123 0.877 28 H 0.093 0.907 29 H 0.149 0.851 30 H 0.086 0.914 31 H 0.127 0.873 32 H 0.105 0.895 33 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 6.611 -16.270 -2.449 17.732 hybrid contribution 0.116 0.629 0.751 0.986 sum 6.728 -15.641 -1.699 17.111 Atomic orbital electron populations 1.70070 1.07616 1.29402 1.46835 1.26527 0.96892 1.02293 0.94660 0.84633 0.77537 0.74565 0.79659 1.18026 1.18480 1.19142 1.21372 0.92035 0.81157 1.55029 0.90290 1.83887 1.40331 1.14195 1.76802 1.24833 0.87167 0.88579 0.76511 1.90499 1.16904 1.88475 1.51267 1.20819 0.90464 0.80224 1.07684 1.47069 1.41169 1.35116 1.07462 1.21924 0.98224 0.99718 0.82399 1.21920 0.95672 0.97766 1.01049 1.21654 1.05815 0.97449 0.88673 1.21258 1.00060 0.94255 0.96075 0.83031 1.22591 0.72285 0.87226 0.83129 1.90704 1.48814 1.19225 1.82935 1.84671 1.79843 1.46877 1.20034 1.19949 0.83188 0.83302 0.83081 1.90785 1.57663 1.59890 1.36832 0.91153 0.83218 0.87041 0.87674 0.90737 0.85100 0.91442 0.87304 0.89544 0.71143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.76 13.67 21.63 0.30 -53.47 16 2 C 0.00 -0.20 5.49 84.88 0.47 0.27 16 3 Si 1.02 43.91 29.55 68.60 2.03 45.93 16 4 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 5 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 6 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 7 C -0.42 -25.87 9.65 67.94 0.66 -25.22 16 8 H 0.08 4.95 6.86 -2.91 -0.02 4.93 16 9 O -0.24 -14.57 9.75 14.81 0.14 -14.43 16 10 C 0.38 19.35 7.96 71.24 0.57 19.92 16 11 O -0.57 -31.32 15.66 20.77 0.33 -31.00 16 12 C 0.13 4.85 5.81 85.64 0.50 5.34 16 13 N -0.58 -17.73 2.30 -831.00 -1.91 -19.65 16 14 C 0.10 2.02 6.32 86.50 0.55 2.57 16 15 C -0.13 -1.93 6.02 30.67 0.18 -1.75 16 16 C -0.10 -1.59 4.77 30.72 0.15 -1.44 16 17 C -0.09 -2.27 2.86 -12.43 -0.04 -2.30 16 18 H 0.15 3.27 8.14 -2.39 -0.02 3.25 16 19 C 0.51 12.60 7.52 71.24 0.54 13.14 16 20 O -0.53 -13.97 16.55 21.97 0.36 -13.61 16 21 O -0.50 -12.12 12.38 -45.64 -0.57 -12.69 16 22 C 0.52 17.20 7.01 87.71 0.61 17.82 16 23 O -0.57 -24.27 14.82 13.46 0.20 -24.07 16 24 H 0.28 15.05 8.31 -92.70 -0.77 14.28 16 25 H 0.15 4.21 8.01 -2.39 -0.02 4.19 16 26 H 0.11 4.27 7.14 -2.38 -0.02 4.25 16 27 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.07 1.70 8.10 -2.39 -0.02 1.68 16 29 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.07 1.25 8.12 -2.39 -0.02 1.23 16 31 H 0.11 1.30 8.14 -2.38 -0.02 1.29 16 32 H 0.09 1.42 7.72 -2.39 -0.02 1.40 16 33 H 0.43 5.80 9.10 -74.06 -0.67 5.12 16 Total: -1.00 -86.06 295.34 5.54 -80.52 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 0.49 Total: 14.12 kcal Atomic # 6 Polarization: 24.16 SS G_CDS: 4.18 Total: 28.34 kcal Atomic # 7 Polarization: -71.50 SS G_CDS: -1.62 Total: -73.12 kcal Atomic # 8 Polarization: -96.26 SS G_CDS: 0.47 Total: -95.79 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -86.06 5.54 -80.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608187818.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.818 kcal (2) G-P(sol) polarization free energy of solvation -86.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds