Wall clock time and date at job start Mon Mar 30 2020 01:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31507 * 119.99923 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99701 * 359.97438 * 7 5 3 10 10 H 1.48506 * 109.46840 * 90.00760 * 9 7 5 11 11 H 1.48504 * 109.46912 * 209.99808 * 9 7 5 12 12 H 1.48497 * 109.47580 * 330.00471 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21623 * 120.00229 * 0.02562 * 14 13 3 16 16 C 1.47299 * 120.00108 * 179.97438 * 14 13 3 17 17 C 1.41341 * 126.43401 * 359.69313 * 16 14 13 18 18 N 1.30411 * 108.04749 * 179.85000 * 17 16 14 19 19 N 1.39925 * 108.96190 * 0.40650 * 18 17 16 20 20 C 1.46500 * 125.75398 * 179.75824 * 19 18 17 21 21 C 1.34354 * 108.49764 * 359.74019 * 19 18 17 22 22 Cl 1.73597 * 126.31842 * 180.02562 * 21 19 18 23 23 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 26 26 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 27 27 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 28 28 H 0.97005 * 119.99936 * 179.97438 * 8 7 5 29 29 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 30 30 H 1.08004 * 125.97675 * 0.02562 * 17 16 14 31 31 H 1.09007 * 109.46659 * 269.97547 * 20 19 18 32 32 H 1.08999 * 109.46681 * 29.97056 * 20 19 18 33 33 H 1.08995 * 109.47531 * 149.97753 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 5.4539 0.8804 1.3362 9 14 3.0964 0.1099 2.5706 10 1 2.8747 -1.3262 2.2643 11 1 3.7942 0.2357 3.8754 12 1 1.7881 0.8091 2.6394 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3415 2.6326 -0.4314 16 6 0.0456 3.3235 -2.6253 17 6 0.8382 3.4458 -3.7891 18 7 0.1427 4.0884 -4.6859 19 7 -1.1068 4.4125 -4.1458 20 6 -2.1749 5.1399 -4.8358 21 6 -1.1620 3.9439 -2.8879 22 17 -2.5023 4.0896 -1.7943 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 5.8770 0.4826 2.1132 29 1 2.2718 2.1232 -1.9978 30 1 1.8429 3.0701 -3.9149 31 1 -2.0591 6.2093 -4.6590 32 1 -2.1178 4.9403 -5.9059 33 1 -3.1423 4.8115 -4.4560 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001611077468.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:14 Heat of formation + Delta-G solvation = 16.413654 kcal Electronic energy + Delta-G solvation = -18775.443620 eV Core-core repulsion = 15670.331365 eV Total energy + Delta-G solvation = -3105.112255 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.49229 -40.31726 -37.99583 -36.95950 -34.68467 -34.24112 -33.08455 -31.21390 -29.46612 -27.96484 -24.80237 -23.92060 -22.42168 -21.78848 -21.05551 -19.56614 -18.36114 -17.45625 -17.04577 -16.98048 -16.21176 -15.92724 -15.67167 -15.13164 -14.87969 -14.48752 -14.10747 -13.83149 -13.67057 -13.56517 -13.48427 -13.10300 -12.91786 -12.82102 -12.69204 -12.33682 -11.89237 -11.79330 -11.32229 -11.16621 -10.80817 -10.66518 -10.53799 -9.90792 -9.56908 -8.32750 -6.37366 0.17898 0.23524 1.04369 1.31377 1.39547 1.49599 1.53077 2.31099 2.50416 2.56738 3.03850 3.36761 3.87186 3.94362 4.29638 4.31127 4.33929 4.39650 4.45724 4.59713 4.61645 4.93228 5.07274 5.17947 5.19963 5.31491 5.45840 5.48501 5.59648 5.74936 6.20499 6.26734 6.65014 6.98997 7.26007 7.56008 8.82390 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.031280 B = 0.005317 C = 0.004824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.932149 B = 5264.517764 C = 5803.302865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.137 4.137 3 C 0.253 3.747 4 H 0.025 0.975 5 C -0.530 4.530 6 H 0.058 0.942 7 C 0.030 3.970 8 N -0.935 5.935 9 Si 0.934 3.066 10 H -0.261 1.261 11 H -0.296 1.296 12 H -0.259 1.259 13 N -0.695 5.695 14 C 0.580 3.420 15 O -0.571 6.571 16 C -0.287 4.287 17 C 0.095 3.905 18 N -0.287 5.287 19 N -0.350 5.350 20 C 0.079 3.921 21 C 0.174 3.826 22 Cl 0.031 6.969 23 H 0.038 0.962 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.043 0.957 27 H 0.068 0.932 28 H 0.269 0.731 29 H 0.404 0.596 30 H 0.223 0.777 31 H 0.101 0.899 32 H 0.117 0.883 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.278 6.155 -12.657 21.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.175 4.175 3 C 0.148 3.852 4 H 0.042 0.958 5 C -0.568 4.568 6 H 0.077 0.923 7 C -0.169 4.169 8 N -0.574 5.574 9 Si 0.762 3.238 10 H -0.186 1.186 11 H -0.223 1.223 12 H -0.183 1.183 13 N -0.343 5.343 14 C 0.368 3.632 15 O -0.452 6.452 16 C -0.303 4.303 17 C -0.091 4.091 18 N -0.108 5.108 19 N -0.132 5.132 20 C -0.060 4.060 21 C 0.014 3.986 22 Cl 0.059 6.941 23 H 0.057 0.943 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.240 0.760 30 H 0.239 0.761 31 H 0.119 0.881 32 H 0.135 0.865 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -16.920 6.648 -13.072 22.391 hybrid contribution 0.265 -0.619 1.458 1.606 sum -16.655 6.030 -11.614 21.181 Atomic orbital electron populations 1.21748 0.95229 1.00344 1.01668 1.22204 0.95830 0.98523 1.00965 1.18773 0.93138 0.89568 0.83707 0.95765 1.21301 0.90351 1.38231 1.06895 0.92342 1.25509 0.95650 0.95948 0.99800 1.69976 1.10267 1.46357 1.30823 0.86071 0.79439 0.79971 0.78346 1.18643 1.22341 1.18327 1.45716 1.15269 1.56275 1.17089 1.17347 0.81879 0.77851 0.86150 1.90752 1.52200 1.61352 1.40848 1.20007 0.95967 1.15871 0.98425 1.24437 1.00740 0.95228 0.88678 1.77286 0.90902 1.21046 1.21575 1.48888 1.13936 1.42520 1.07814 1.22516 0.86370 0.97172 0.99909 1.22094 0.92134 0.98149 0.86191 1.98442 1.40988 1.96178 1.58511 0.94307 0.92568 0.92767 0.93901 0.91302 0.92202 0.76031 0.76098 0.88091 0.86494 0.87487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.13 8.51 71.98 0.61 -4.52 16 2 C -0.14 -5.87 5.11 30.59 0.16 -5.71 16 3 C 0.25 11.84 1.83 44.24 0.08 11.92 16 4 H 0.02 1.28 6.63 -2.38 -0.02 1.26 16 5 C -0.53 -28.59 9.31 25.60 0.24 -28.35 16 6 H 0.06 3.34 7.98 -2.91 -0.02 3.32 16 7 C 0.03 1.71 5.45 84.66 0.46 2.17 16 8 N -0.94 -56.02 13.96 21.45 0.30 -55.72 16 9 Si 0.93 44.78 24.41 68.60 1.67 46.45 16 10 H -0.26 -11.77 6.83 99.48 0.68 -11.09 16 11 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 12 H -0.26 -12.30 6.53 99.48 0.65 -11.65 16 13 N -0.69 -27.06 5.01 -449.48 -2.25 -29.31 16 14 C 0.58 21.84 6.38 86.63 0.55 22.39 16 15 O -0.57 -24.45 12.78 -4.11 -0.05 -24.50 16 16 C -0.29 -8.75 6.13 -20.12 -0.12 -8.87 16 17 C 0.10 2.40 11.50 85.67 0.99 3.38 16 18 N -0.29 -7.01 12.49 -56.26 -0.70 -7.71 16 19 N -0.35 -7.64 3.98 -357.41 -1.42 -9.06 16 20 C 0.08 0.88 11.28 127.77 1.44 2.33 16 21 C 0.17 4.68 7.53 84.32 0.63 5.32 16 22 Cl 0.03 0.77 27.34 -2.72 -0.07 0.70 16 23 H 0.04 1.60 7.84 -2.39 -0.02 1.58 16 24 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.05 2.08 5.65 -2.38 -0.01 2.07 16 26 H 0.04 1.93 3.22 -2.39 -0.01 1.92 16 27 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 28 H 0.27 15.17 8.31 -92.70 -0.77 14.40 16 29 H 0.40 13.66 7.49 -92.71 -0.69 12.96 16 30 H 0.22 4.22 7.50 -2.91 -0.02 4.20 16 31 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.11 0.88 7.77 -2.39 -0.02 0.86 16 Total: -1.00 -69.23 288.44 2.88 -66.35 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: 0.37 Total: 12.76 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 5.04 Total: 0.05 kcal Atomic # 7 Polarization: -97.73 SS G_CDS: -4.08 Total: -101.81 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.05 Total: -24.50 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.67 Total: 46.45 kcal Atomic # 17 Polarization: 0.77 SS G_CDS: -0.07 Total: 0.70 kcal Total: -69.23 2.88 -66.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611077468.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.762 kcal (2) G-P(sol) polarization free energy of solvation -69.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds