Wall clock time and date at job start Mon Mar 30 2020 00:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46760 * 194.83610 * 3 2 1 5 5 C 1.36916 * 119.99744 * 285.59292 * 4 3 2 6 6 H 1.08006 * 119.99648 * 212.40349 * 5 4 3 7 7 C 1.39024 * 120.00178 * 32.67220 * 5 4 3 8 8 N 1.31379 * 119.99500 * 10.56839 * 7 5 4 9 9 Si 1.86795 * 120.00009 * 190.56945 * 7 5 4 10 10 H 1.48500 * 109.47142 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47442 * 120.00125 * 9 7 5 12 12 H 1.48507 * 109.46945 * 240.00067 * 9 7 5 13 13 C 1.34774 * 120.00566 * 105.59185 * 4 3 2 14 14 O 1.21599 * 120.00321 * 170.74677 * 13 4 3 15 15 C 1.47585 * 119.99781 * 350.74588 * 13 4 3 16 16 C 1.40245 * 120.41689 * 341.57072 * 15 13 4 17 17 N 1.31176 * 121.36853 * 179.97438 * 16 15 13 18 18 C 1.32938 * 121.85368 * 0.02562 * 17 16 15 19 19 N 1.36637 * 133.26135 * 179.97438 * 18 17 16 20 20 H 0.97004 * 125.34208 * 359.96359 * 19 18 17 21 21 N 1.39802 * 109.32284 * 179.97438 * 19 18 17 22 22 C 1.30201 * 110.12750 * 359.97438 * 21 19 18 23 23 C 1.41071 * 120.21589 * 359.97438 * 18 17 16 24 24 C 1.39567 * 120.41811 * 161.29408 * 15 13 4 25 25 H 1.08995 * 109.47399 * 74.83178 * 3 2 1 26 26 H 1.09004 * 109.47095 * 314.83119 * 3 2 1 27 27 H 0.97006 * 119.99696 * 179.97438 * 8 7 5 28 28 H 1.08000 * 119.31457 * 359.97438 * 16 15 13 29 29 H 1.08004 * 126.19892 * 179.97438 * 22 21 19 30 30 H 1.08002 * 121.03084 * 359.97274 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0956 1.3361 0.3537 5 6 3.0228 2.3551 -0.5579 6 1 3.7771 3.1280 -0.5652 7 6 1.9749 2.3978 -1.4705 8 7 0.9489 1.5892 -1.3308 9 14 2.0257 3.6049 -2.8951 10 1 3.2794 4.3979 -2.8275 11 1 1.9799 2.8587 -4.1781 12 1 0.8577 4.5184 -2.8118 13 6 3.6159 1.5617 1.5763 14 8 4.1722 2.6162 1.8153 15 6 3.5104 0.5288 2.6252 16 6 2.5680 -0.5038 2.5127 17 7 2.4585 -1.4316 3.4334 18 6 3.2308 -1.4409 4.5154 19 7 3.3176 -2.2715 5.5969 20 1 2.7689 -3.0574 5.7463 21 7 4.3209 -1.8109 6.4546 22 6 4.8683 -0.7349 5.9668 23 6 4.2034 -0.4362 4.7021 24 6 4.3511 0.5640 3.7387 25 1 2.9715 -0.2681 -0.9918 26 1 2.9716 -0.7237 0.7288 27 1 0.2175 1.6192 -1.9674 28 1 1.9190 -0.5356 1.6500 29 1 5.6681 -0.1657 6.4172 30 1 5.0907 1.3425 3.8535 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001611113849.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:23 Heat of formation + Delta-G solvation = 167.058997 kcal Electronic energy + Delta-G solvation = -19940.300225 eV Core-core repulsion = 16740.612948 eV Total energy + Delta-G solvation = -3199.687277 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.53433 -39.51660 -37.36105 -36.10004 -33.87306 -32.99456 -32.30472 -30.58747 -29.98942 -27.59497 -25.52081 -23.82426 -23.09484 -21.81714 -19.88192 -18.29719 -17.95315 -17.71747 -16.55248 -16.04722 -15.53265 -15.27765 -14.79128 -14.21208 -14.12294 -14.07600 -13.48803 -13.17337 -12.99750 -12.56578 -12.25981 -11.72360 -11.40174 -11.23903 -11.16101 -10.91721 -10.71054 -10.55530 -10.43065 -10.10003 -9.55075 -9.36222 -8.98204 -8.80638 -8.33362 -8.04301 -6.28760 -4.31657 0.81612 1.09171 2.37112 2.40930 3.03795 3.15243 3.21605 3.43421 3.79580 4.04057 4.13059 4.16976 4.36554 4.46769 4.64264 4.76826 4.87214 5.10119 5.21188 5.28305 5.44432 5.55307 5.80624 5.98406 6.16076 6.23470 6.27309 6.56322 7.06038 7.29670 7.35783 7.82458 7.97560 8.12581 8.80113 8.99311 9.37076 9.53587 10.40154 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.035250 B = 0.005464 C = 0.004823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.136165 B = 5122.846621 C = 5804.619586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C 0.250 3.750 3 C 0.191 3.809 4 N -0.440 5.440 5 C -0.300 4.300 6 H 0.109 0.891 7 C 0.024 3.976 8 N -0.860 5.860 9 Si 0.941 3.059 10 H -0.265 1.265 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.517 3.483 14 O -0.562 6.562 15 C -0.205 4.205 16 C 0.168 3.832 17 N -0.506 5.506 18 C 0.318 3.682 19 N -0.497 5.497 20 H 0.443 0.557 21 N -0.245 5.245 22 C 0.096 3.904 23 C -0.237 4.237 24 C 0.055 3.945 25 H 0.102 0.898 26 H 0.103 0.897 27 H 0.280 0.720 28 H 0.195 0.805 29 H 0.203 0.797 30 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.040 -6.531 7.253 12.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.157 5.157 2 C -0.065 4.065 3 C 0.064 3.936 4 N -0.160 5.160 5 C -0.428 4.428 6 H 0.126 0.874 7 C -0.178 4.178 8 N -0.501 5.501 9 Si 0.767 3.233 10 H -0.189 1.189 11 H -0.204 1.204 12 H -0.206 1.206 13 C 0.306 3.694 14 O -0.444 6.444 15 C -0.212 4.212 16 C 0.000 4.000 17 N -0.221 5.221 18 C 0.078 3.922 19 N -0.215 5.215 20 H 0.288 0.712 21 N -0.058 5.058 22 C -0.104 4.104 23 C -0.247 4.247 24 C 0.026 3.974 25 H 0.120 0.880 26 H 0.120 0.880 27 H 0.096 0.904 28 H 0.211 0.789 29 H 0.219 0.781 30 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 4.897 -7.519 8.141 12.116 hybrid contribution 0.485 1.317 -1.310 1.920 sum 5.382 -6.201 6.831 10.681 Atomic orbital electron populations 1.80777 1.13389 1.11351 1.10146 1.27420 0.94300 0.91815 0.92935 1.19421 0.84190 0.86829 1.03154 1.43376 1.53715 1.07943 1.10924 1.19745 1.09253 1.04332 1.09438 0.87379 1.25793 0.93845 0.98196 0.99964 1.69420 1.08062 1.36710 1.35858 0.85613 0.78711 0.79491 0.79507 1.18950 1.20425 1.20585 1.17712 0.84102 0.86369 0.81263 1.90646 1.46240 1.27261 1.80297 1.21103 1.01207 0.99725 0.99199 1.24407 0.94168 0.86587 0.94847 1.66884 1.25625 1.28389 1.01200 1.19262 0.92969 0.90399 0.89563 1.45710 1.33493 1.26590 1.15726 0.71222 1.76632 1.01184 1.13280 1.14747 1.25089 0.99016 0.93955 0.92318 1.20465 1.03626 1.01128 0.99504 1.21149 0.94218 0.93549 0.88519 0.88048 0.87989 0.90418 0.78937 0.78058 0.83046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.40 17.11 42.04 0.72 -10.68 16 2 C 0.25 5.55 9.64 -21.67 -0.21 5.34 16 3 C 0.19 3.67 5.00 -6.83 -0.03 3.64 16 4 N -0.44 -9.89 2.65 -119.10 -0.32 -10.20 16 5 C -0.30 -7.40 9.14 -14.99 -0.14 -7.54 16 6 H 0.11 2.75 7.53 -52.48 -0.40 2.36 16 7 C 0.02 0.58 5.27 -17.45 -0.09 0.49 16 8 N -0.86 -21.69 7.17 55.27 0.40 -21.29 16 9 Si 0.94 19.42 29.57 -169.99 -5.03 14.39 16 10 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 11 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 12 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 13 C 0.52 11.36 7.47 -12.45 -0.09 11.26 16 14 O -0.56 -13.89 16.34 5.28 0.09 -13.81 16 15 C -0.20 -3.73 5.62 -104.84 -0.59 -4.32 16 16 C 0.17 2.97 8.73 -17.08 -0.15 2.82 16 17 N -0.51 -8.54 10.37 -12.01 -0.12 -8.67 16 18 C 0.32 4.88 8.47 -156.08 -1.32 3.56 16 19 N -0.50 -6.33 7.33 31.15 0.23 -6.11 16 20 H 0.44 4.45 8.96 -182.82 -1.64 2.81 16 21 N -0.25 -3.02 12.54 31.87 0.40 -2.62 16 22 C 0.10 1.07 12.30 -15.15 -0.19 0.88 16 23 C -0.24 -3.39 6.36 -105.20 -0.67 -4.05 16 24 C 0.05 0.85 9.76 -38.56 -0.38 0.47 16 25 H 0.10 1.81 8.14 -51.93 -0.42 1.38 16 26 H 0.10 1.64 4.31 -51.93 -0.22 1.41 16 27 H 0.28 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.19 3.56 2.61 -52.49 -0.14 3.42 16 29 H 0.20 1.36 8.06 -52.48 -0.42 0.94 16 30 H 0.15 2.10 7.83 -52.49 -0.41 1.69 16 LS Contribution 267.92 15.07 4.04 4.04 Total: -1.00 -31.21 267.92 -6.24 -37.46 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -2.79 Total: 4.94 kcal Atomic # 6 Polarization: 16.41 SS G_CDS: -3.86 Total: 12.55 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: 1.30 Total: -59.57 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: 0.09 Total: -13.81 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.03 Total: 14.39 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -31.21 -6.24 -37.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611113849.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.515 kcal (2) G-P(sol) polarization free energy of solvation -31.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 173.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds