Wall clock time and date at job start Mon Mar 30 2020 00:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35582 * 117.00023 * 2 1 4 4 N 1.29780 * 125.65139 * 359.97310 * 3 2 1 5 5 N 1.26252 * 117.68379 * 180.02562 * 4 3 2 6 6 C 1.29477 * 116.58162 * 0.02562 * 5 4 3 7 7 C 1.50697 * 126.15309 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47075 * 90.02565 * 7 6 5 9 9 C 1.47479 * 110.99950 * 170.00081 * 8 7 6 10 10 C 1.53511 * 87.93139 * 221.29298 * 9 8 7 11 11 O 1.42901 * 114.17222 * 272.37779 * 10 9 8 12 12 C 1.50696 * 114.17384 * 139.67235 * 10 9 8 13 13 H 1.08005 * 120.00014 * 5.47209 * 12 10 9 14 14 C 1.37878 * 120.00466 * 185.47496 * 12 10 9 15 15 N 1.31510 * 119.99785 * 10.19230 * 14 12 10 16 16 Si 1.86797 * 120.00095 * 190.18706 * 14 12 10 17 17 H 1.48498 * 109.47457 * 84.99662 * 16 14 12 18 18 H 1.48501 * 109.47210 * 204.99904 * 16 14 12 19 19 H 1.48498 * 109.47395 * 324.99524 * 16 14 12 20 20 C 1.47477 * 111.00452 * 74.02877 * 8 7 6 21 21 S 1.71318 * 125.65221 * 180.30840 * 3 2 1 22 22 H 1.09003 * 109.46916 * 60.00207 * 1 2 3 23 23 H 1.08998 * 109.47057 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47384 * 299.99967 * 1 2 3 25 25 H 1.08993 * 109.47145 * 330.02304 * 7 6 5 26 26 H 1.09007 * 109.47030 * 210.02370 * 7 6 5 27 27 H 1.09001 * 113.48176 * 336.06048 * 9 8 7 28 28 H 1.09010 * 113.47836 * 106.52890 * 9 8 7 29 29 H 0.96700 * 114.00502 * 184.00590 * 11 10 9 30 30 H 0.96997 * 120.00195 * 180.02562 * 15 14 12 31 31 H 1.09004 * 113.47716 * 253.47275 * 20 8 7 32 32 H 1.09003 * 113.47370 * 23.93469 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2080 0.0000 4 7 1.4483 2.3608 -0.0005 5 7 2.1719 3.3954 -0.0009 6 6 3.4528 3.2066 -0.0013 7 6 4.5098 4.2807 -0.0024 8 7 4.8543 4.6301 1.3822 9 6 6.0449 5.4992 1.4274 10 6 6.5269 4.6821 2.6343 11 8 6.0412 5.1545 3.8924 12 6 8.0063 4.3950 2.6340 13 1 8.6409 4.8311 1.8767 14 6 8.5497 3.5754 3.6005 15 7 7.7622 2.8863 4.3970 16 14 10.4045 3.4438 3.7784 17 1 10.8989 4.5482 4.6392 18 1 10.7511 2.1397 4.3985 19 1 11.0383 3.5387 2.4388 20 6 5.6712 3.5729 2.0066 21 16 3.7382 1.4658 -0.0075 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 4.1300 5.1637 -0.5162 26 1 5.3987 3.9152 -0.5168 27 1 6.6874 5.4015 0.5523 28 1 5.8160 6.5372 1.6693 29 1 6.3944 4.6765 4.6552 30 1 8.1444 2.3100 5.0771 31 1 5.1256 2.9782 2.7392 32 1 6.2139 2.9610 1.2860 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001617442372.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:27 Heat of formation + Delta-G solvation = 29.404510 kcal Electronic energy + Delta-G solvation = -18484.488912 eV Core-core repulsion = 15381.983689 eV Total energy + Delta-G solvation = -3102.505223 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.17046 -39.34441 -38.66686 -34.62871 -32.22796 -31.82585 -29.07238 -27.90879 -26.40389 -25.09984 -24.75620 -22.47649 -20.35377 -19.48413 -18.77610 -17.56021 -17.25531 -16.69591 -15.39075 -15.24245 -15.09959 -14.60638 -14.43733 -14.08260 -13.95365 -13.28089 -12.72102 -12.33536 -12.15766 -11.99720 -11.75079 -11.70350 -11.23053 -10.93432 -10.84063 -10.50575 -10.34174 -10.14290 -10.00274 -9.62788 -9.26766 -8.98294 -8.80187 -8.29751 -8.00091 -6.32284 -4.41668 0.49148 0.62239 1.38976 2.66031 3.13340 3.17573 3.25533 3.27097 4.19794 4.23010 4.59278 4.78643 4.93707 5.01034 5.02644 5.21156 5.34975 5.60683 5.73086 5.75541 5.92715 6.16707 6.25593 6.56222 6.59084 6.95697 7.03385 7.23248 7.67400 7.78566 7.90984 8.60496 8.64748 9.28333 9.39425 10.73418 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.028781 B = 0.004794 C = 0.004455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.638777 B = 5839.347581 C = 6284.041868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.273 6.273 3 C 0.168 3.832 4 N -0.333 5.333 5 N -0.217 5.217 6 C 0.027 3.973 7 C 0.097 3.903 8 N -0.465 5.465 9 C 0.007 3.993 10 C 0.250 3.750 11 O -0.563 6.563 12 C -0.544 4.544 13 H 0.068 0.932 14 C 0.074 3.926 15 N -0.887 5.887 16 Si 0.899 3.101 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.273 1.273 20 C -0.019 4.019 21 S 0.172 5.828 22 H 0.064 0.936 23 H 0.106 0.894 24 H 0.065 0.935 25 H 0.106 0.894 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.383 0.617 30 H 0.270 0.730 31 H 0.072 0.928 32 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.444 -5.164 -8.995 12.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.178 6.178 3 C -0.148 4.148 4 N -0.187 5.187 5 N -0.054 5.054 6 C -0.255 4.255 7 C -0.035 4.035 8 N -0.188 5.188 9 C -0.122 4.122 10 C 0.208 3.792 11 O -0.371 6.371 12 C -0.582 4.582 13 H 0.086 0.914 14 C -0.130 4.130 15 N -0.525 5.525 16 Si 0.726 3.274 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.148 4.148 21 S 0.413 5.587 22 H 0.082 0.918 23 H 0.124 0.876 24 H 0.084 0.916 25 H 0.124 0.876 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.234 0.766 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.665 -4.884 -8.974 13.397 hybrid contribution 1.528 -0.977 0.047 1.814 sum -7.137 -5.860 -8.927 12.845 Atomic orbital electron populations 1.23133 0.76203 1.03875 1.03136 1.86311 1.23400 1.19980 1.88075 1.27380 0.95694 0.90517 1.01227 1.71446 1.31090 0.93362 1.22784 1.71144 1.01281 1.19738 1.13268 1.29841 0.95954 0.94936 1.04750 1.21245 0.92876 0.93893 0.95525 1.69211 1.28747 1.10855 1.10036 1.24118 0.89862 0.98916 0.99302 1.19295 0.90688 0.87658 0.81554 1.86091 1.72292 1.62226 1.16502 1.21471 0.92469 1.30112 1.14166 0.91373 1.25067 0.98850 0.93811 0.95276 1.69788 1.35349 1.26676 1.20654 0.86501 0.84728 0.77550 0.78641 1.20160 1.21092 1.19739 1.24719 0.94935 0.96610 0.98535 1.85130 0.98954 1.05296 1.69291 0.91763 0.87604 0.91616 0.87645 0.91643 0.91178 0.90458 0.76642 0.92017 0.90959 0.92121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.67 101.05 1.08 1.41 16 2 O -0.27 -3.64 10.56 -18.44 -0.19 -3.84 16 3 C 0.17 2.62 8.25 51.90 0.43 3.05 16 4 N -0.33 -5.79 10.94 29.24 0.32 -5.47 16 5 N -0.22 -3.98 11.65 33.57 0.39 -3.59 16 6 C 0.03 0.46 6.94 -13.27 -0.09 0.37 16 7 C 0.10 1.59 5.45 -4.98 -0.03 1.57 16 8 N -0.46 -9.43 6.40 -246.10 -1.58 -11.01 16 9 C 0.01 0.14 7.12 -7.55 -0.05 0.08 16 10 C 0.25 6.04 1.40 -91.25 -0.13 5.91 16 11 O -0.56 -14.62 13.56 -35.23 -0.48 -15.10 16 12 C -0.54 -13.80 8.64 -34.44 -0.30 -14.09 16 13 H 0.07 1.68 7.84 -52.48 -0.41 1.27 16 14 C 0.07 1.86 5.21 -17.82 -0.09 1.77 16 15 N -0.89 -23.03 11.82 55.43 0.66 -22.37 16 16 Si 0.90 19.61 29.55 -169.99 -5.02 14.58 16 17 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 18 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 20 C -0.02 -0.42 6.71 -7.56 -0.05 -0.47 16 21 S 0.17 2.60 23.30 -107.50 -2.50 0.09 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.11 1.56 8.14 -51.93 -0.42 1.13 16 26 H 0.07 0.96 7.56 -51.93 -0.39 0.57 16 27 H 0.07 1.29 7.72 -51.93 -0.40 0.89 16 28 H 0.08 1.56 8.14 -51.92 -0.42 1.13 16 29 H 0.38 10.01 7.10 45.56 0.32 10.33 16 30 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 31 H 0.07 1.76 8.14 -51.93 -0.42 1.34 16 32 H 0.06 1.30 7.66 -51.93 -0.40 0.91 16 LS Contribution 294.54 15.07 4.44 4.44 Total: -1.00 -28.88 294.54 -6.16 -35.04 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -2.95 Total: 7.63 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: 0.76 Total: -0.40 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: -0.21 Total: -42.44 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.67 Total: -18.94 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.58 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -2.50 Total: 0.09 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.88 -6.16 -35.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001617442372.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.440 kcal (2) G-P(sol) polarization free energy of solvation -28.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds