Wall clock time and date at job start Mon Mar 30 2020 00:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35582 * 117.00023 * 2 1 4 4 N 1.29780 * 125.65139 * 359.97310 * 3 2 1 5 5 N 1.26252 * 117.68379 * 180.02562 * 4 3 2 6 6 C 1.29477 * 116.58162 * 0.02562 * 5 4 3 7 7 C 1.50697 * 126.15309 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47075 * 90.02565 * 7 6 5 9 9 C 1.47479 * 110.99950 * 170.00081 * 8 7 6 10 10 C 1.53511 * 87.93139 * 221.29298 * 9 8 7 11 11 O 1.42901 * 114.17222 * 272.37779 * 10 9 8 12 12 C 1.50696 * 114.17384 * 139.67235 * 10 9 8 13 13 H 1.08005 * 120.00014 * 5.47209 * 12 10 9 14 14 C 1.37878 * 120.00466 * 185.47496 * 12 10 9 15 15 N 1.31510 * 119.99785 * 10.19230 * 14 12 10 16 16 Si 1.86797 * 120.00095 * 190.18706 * 14 12 10 17 17 H 1.48498 * 109.47457 * 84.99662 * 16 14 12 18 18 H 1.48501 * 109.47210 * 204.99904 * 16 14 12 19 19 H 1.48498 * 109.47395 * 324.99524 * 16 14 12 20 20 C 1.47477 * 111.00452 * 74.02877 * 8 7 6 21 21 S 1.71318 * 125.65221 * 180.30840 * 3 2 1 22 22 H 1.09003 * 109.46916 * 60.00207 * 1 2 3 23 23 H 1.08998 * 109.47057 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47384 * 299.99967 * 1 2 3 25 25 H 1.08993 * 109.47145 * 330.02304 * 7 6 5 26 26 H 1.09007 * 109.47030 * 210.02370 * 7 6 5 27 27 H 1.09001 * 113.48176 * 336.06048 * 9 8 7 28 28 H 1.09010 * 113.47836 * 106.52890 * 9 8 7 29 29 H 0.96700 * 114.00502 * 184.00590 * 11 10 9 30 30 H 0.96997 * 120.00195 * 180.02562 * 15 14 12 31 31 H 1.09004 * 113.47716 * 253.47275 * 20 8 7 32 32 H 1.09003 * 113.47370 * 23.93469 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2080 0.0000 4 7 1.4483 2.3608 -0.0005 5 7 2.1719 3.3954 -0.0009 6 6 3.4528 3.2066 -0.0013 7 6 4.5098 4.2807 -0.0024 8 7 4.8543 4.6301 1.3822 9 6 6.0449 5.4992 1.4274 10 6 6.5269 4.6821 2.6343 11 8 6.0412 5.1545 3.8924 12 6 8.0063 4.3950 2.6340 13 1 8.6409 4.8311 1.8767 14 6 8.5497 3.5754 3.6005 15 7 7.7622 2.8863 4.3970 16 14 10.4045 3.4438 3.7784 17 1 10.8989 4.5482 4.6392 18 1 10.7511 2.1397 4.3985 19 1 11.0383 3.5387 2.4388 20 6 5.6712 3.5729 2.0066 21 16 3.7382 1.4658 -0.0075 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 4.1300 5.1637 -0.5162 26 1 5.3987 3.9152 -0.5168 27 1 6.6874 5.4015 0.5523 28 1 5.8160 6.5372 1.6693 29 1 6.3944 4.6765 4.6552 30 1 8.1444 2.3100 5.0771 31 1 5.1256 2.9782 2.7392 32 1 6.2139 2.9610 1.2860 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001617442372.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:27 Heat of formation + Delta-G solvation = 3.174059 kcal Electronic energy + Delta-G solvation = -18485.626349 eV Core-core repulsion = 15381.983689 eV Total energy + Delta-G solvation = -3103.642661 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.42996 -40.97483 -39.77205 -36.43904 -34.16641 -33.23758 -30.42426 -29.02336 -27.96770 -26.75393 -26.20916 -24.01123 -21.56928 -20.72906 -20.51585 -19.25150 -18.62850 -17.85548 -17.08720 -16.82331 -16.40767 -16.05844 -15.81067 -15.65987 -15.38508 -14.65251 -14.26133 -13.89202 -13.61830 -13.50286 -13.11887 -12.88110 -12.77401 -12.56933 -12.51394 -12.22649 -12.00637 -11.64368 -11.30303 -11.12558 -10.77466 -10.66748 -10.29034 -10.01616 -9.69118 -8.22148 -6.38047 -0.70873 -0.59832 0.14525 1.36812 1.45787 1.49708 1.57038 2.06694 2.40767 2.98158 3.01203 3.26455 3.40163 3.87653 4.03017 4.16330 4.26382 4.31047 4.37468 4.44680 4.50525 4.62770 4.65264 4.94365 5.19633 5.36557 5.38995 5.52205 5.74607 5.97715 6.22494 6.67846 7.34692 7.37577 7.39516 8.82829 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.028781 B = 0.004794 C = 0.004455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.638777 B = 5839.347581 C = 6284.041868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.276 6.276 3 C 0.170 3.830 4 N -0.353 5.353 5 N -0.239 5.239 6 C 0.013 3.987 7 C 0.098 3.902 8 N -0.477 5.477 9 C 0.019 3.981 10 C 0.219 3.781 11 O -0.576 6.576 12 C -0.560 4.560 13 H 0.072 0.928 14 C 0.033 3.967 15 N -0.911 5.911 16 Si 0.960 3.040 17 H -0.277 1.277 18 H -0.285 1.285 19 H -0.265 1.265 20 C -0.002 4.002 21 S 0.199 5.801 22 H 0.067 0.933 23 H 0.144 0.856 24 H 0.060 0.940 25 H 0.124 0.876 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.377 0.623 30 H 0.271 0.729 31 H 0.043 0.957 32 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.040 -5.717 -10.237 13.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.180 6.180 3 C -0.146 4.146 4 N -0.207 5.207 5 N -0.076 5.076 6 C -0.270 4.270 7 C -0.034 4.034 8 N -0.201 5.201 9 C -0.109 4.109 10 C 0.178 3.822 11 O -0.384 6.384 12 C -0.598 4.598 13 H 0.090 0.910 14 C -0.169 4.169 15 N -0.550 5.550 16 Si 0.785 3.215 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.189 1.189 20 C -0.132 4.132 21 S 0.440 5.560 22 H 0.086 0.914 23 H 0.162 0.838 24 H 0.078 0.922 25 H 0.142 0.858 26 H 0.106 0.894 27 H 0.113 0.887 28 H 0.097 0.903 29 H 0.226 0.774 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.276 -5.439 -10.236 14.243 hybrid contribution 1.303 -0.878 0.420 1.627 sum -6.973 -6.318 -9.816 13.598 Atomic orbital electron populations 1.23480 0.74119 1.06385 1.03047 1.86340 1.25413 1.18716 1.87506 1.27562 0.96204 0.90857 0.99997 1.71399 1.31424 0.93760 1.24121 1.71110 1.02043 1.20630 1.13867 1.29899 0.95778 0.96129 1.05176 1.21332 0.93692 0.94920 0.93476 1.69086 1.28331 1.09865 1.12832 1.24045 0.90027 0.98511 0.98356 1.19707 0.90770 0.89949 0.81807 1.86080 1.72577 1.62554 1.17189 1.21749 0.93345 1.30145 1.14561 0.91026 1.25751 1.02608 0.93492 0.95024 1.69881 1.36865 1.27145 1.21080 0.85547 0.80066 0.77197 0.78682 1.20246 1.21101 1.18942 1.24421 0.94490 0.96154 0.98122 1.84982 0.98527 1.03779 1.68688 0.91394 0.83801 0.92160 0.85773 0.89376 0.88730 0.90313 0.77382 0.92014 0.93865 0.91509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.67 113.37 1.21 1.67 16 2 O -0.28 -6.91 10.56 -88.91 -0.94 -7.84 16 3 C 0.17 5.12 8.25 130.55 1.08 6.20 16 4 N -0.35 -12.01 10.94 -175.53 -1.92 -13.93 16 5 N -0.24 -8.60 11.65 -47.69 -0.56 -9.15 16 6 C 0.01 0.41 6.94 88.45 0.61 1.03 16 7 C 0.10 3.02 5.45 85.56 0.47 3.49 16 8 N -0.48 -18.83 6.40 -932.92 -5.97 -24.81 16 9 C 0.02 0.75 7.12 83.57 0.60 1.34 16 10 C 0.22 10.52 1.40 -11.20 -0.02 10.50 16 11 O -0.58 -30.38 13.56 -148.98 -2.02 -32.40 16 12 C -0.56 -28.02 8.64 25.60 0.22 -27.80 16 13 H 0.07 3.44 7.84 -2.91 -0.02 3.42 16 14 C 0.03 1.63 5.21 84.66 0.44 2.07 16 15 N -0.91 -47.57 11.82 21.45 0.25 -47.32 16 16 Si 0.96 39.69 29.55 68.60 2.03 41.72 16 17 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 18 H -0.29 -11.71 7.11 99.48 0.71 -11.00 16 19 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 20 C 0.00 -0.10 6.71 83.57 0.56 0.46 16 21 S 0.20 5.76 23.30 -56.49 -1.32 4.44 16 22 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.12 3.37 8.14 -2.39 -0.02 3.35 16 26 H 0.09 2.33 7.56 -2.38 -0.02 2.32 16 27 H 0.09 3.22 7.72 -2.39 -0.02 3.20 16 28 H 0.08 3.06 8.14 -2.38 -0.02 3.05 16 29 H 0.38 20.24 7.10 -74.06 -0.53 19.71 16 30 H 0.27 13.46 8.31 -92.71 -0.77 12.69 16 31 H 0.04 2.13 8.14 -2.38 -0.02 2.11 16 32 H 0.07 2.81 7.66 -2.39 -0.02 2.79 16 Total: -1.00 -61.05 294.54 -4.64 -65.69 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: 0.63 Total: 24.65 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: 5.17 Total: -1.05 kcal Atomic # 7 Polarization: -87.02 SS G_CDS: -8.20 Total: -95.21 kcal Atomic # 8 Polarization: -37.28 SS G_CDS: -2.96 Total: -40.24 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.72 kcal Atomic # 16 Polarization: 5.76 SS G_CDS: -1.32 Total: 4.44 kcal Total: -61.05 -4.64 -65.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001617442372.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.868 kcal (2) G-P(sol) polarization free energy of solvation -61.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds