Wall clock time and date at job start Mon Mar 30 2020 01:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46493 * 109.46974 * 229.32764 * 3 2 1 5 5 C 1.36730 * 119.99791 * 270.25807 * 4 3 2 6 6 H 1.08005 * 120.00193 * 142.62163 * 5 4 3 7 7 C 1.39140 * 120.00104 * 322.34177 * 5 4 3 8 8 N 1.31304 * 120.00056 * 169.94892 * 7 5 4 9 9 Si 1.86801 * 119.99889 * 349.94285 * 7 5 4 10 10 H 1.48506 * 109.46700 * 95.48322 * 9 7 5 11 11 H 1.48501 * 109.47390 * 215.48216 * 9 7 5 12 12 H 1.48498 * 109.47248 * 335.48953 * 9 7 5 13 13 C 1.34777 * 120.00189 * 90.25337 * 4 3 2 14 14 O 1.21599 * 119.99967 * 348.18238 * 13 4 3 15 15 C 1.47689 * 119.99960 * 168.17834 * 13 4 3 16 16 C 1.39577 * 121.12196 * 335.99552 * 15 13 4 17 17 C 1.38555 * 119.36332 * 179.67000 * 16 15 13 18 18 N 1.31625 * 121.64330 * 0.66344 * 17 16 15 19 19 C 1.32231 * 121.88959 * 359.64320 * 18 17 16 20 20 N 1.37205 * 134.66834 * 179.97438 * 19 18 17 21 21 H 0.97004 * 125.86883 * 359.97099 * 20 19 18 22 22 N 1.28783 * 108.26203 * 180.02562 * 20 19 18 23 23 N 1.28696 * 111.74621 * 359.97438 * 22 20 19 24 24 C 1.34369 * 109.14961 * 0.02562 * 23 22 20 25 25 H 4.40639 * 5.51406 * 179.97438 * 4 1 2 26 26 H 1.09004 * 109.46533 * 109.32686 * 3 2 1 27 27 H 1.08998 * 109.47438 * 349.32781 * 3 2 1 28 28 H 0.96997 * 119.99873 * 180.02562 * 8 7 5 29 29 H 1.07998 * 120.32098 * 359.97438 * 16 15 13 30 30 H 1.08001 * 119.17994 * 180.31160 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.9010 1.0475 5 6 3.3561 2.2204 0.7660 6 1 3.1246 2.9762 1.5020 7 6 3.8860 2.5891 -0.4666 8 7 3.9166 3.8544 -0.8161 9 14 4.5541 1.2840 -1.6241 10 1 3.5020 0.9030 -2.6005 11 1 5.7320 1.8226 -2.3506 12 1 4.9592 0.0888 -0.8415 13 6 3.3636 0.4289 2.2888 14 8 2.9689 -0.6781 2.6009 15 6 4.0948 1.2560 3.2699 16 6 4.9692 2.2621 2.8560 17 6 5.6312 3.0208 3.8078 18 7 5.4666 2.8089 5.0965 19 6 4.6574 1.8674 5.5518 20 7 4.2953 1.4277 6.8000 21 1 4.6170 1.7831 7.6434 22 7 3.4559 0.4611 6.6596 23 7 3.2198 0.2110 5.4195 24 6 3.9372 1.0523 4.6558 25 1 -1.0501 0.0000 -0.0003 26 1 3.0091 0.3410 -0.9698 27 1 3.0099 -1.0090 0.1903 28 1 4.2857 4.1114 -1.6755 29 1 5.1246 2.4507 1.8041 30 1 6.3033 3.8019 3.4843 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001625878437.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:31 Heat of formation + Delta-G solvation = 181.473935 kcal Electronic energy + Delta-G solvation = -20137.426178 eV Core-core repulsion = 16938.363980 eV Total energy + Delta-G solvation = -3199.062198 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.01620 -39.52030 -38.12940 -35.50819 -33.81565 -32.90255 -32.01357 -31.19454 -30.37488 -27.23972 -25.62751 -24.44903 -23.37370 -22.55580 -20.15979 -18.78545 -18.45009 -17.91663 -16.97131 -16.41448 -16.21016 -15.88245 -15.01926 -14.63689 -14.19766 -13.96461 -13.36634 -12.98315 -12.80851 -12.60421 -12.45447 -12.12307 -11.97309 -11.36071 -11.22362 -11.10068 -10.79650 -10.34447 -9.88806 -9.59969 -9.55959 -9.31346 -8.81150 -8.77721 -8.58337 -8.20598 -6.74190 -4.36758 0.50740 1.37780 2.44212 2.54672 2.86102 3.01997 3.03075 3.16615 3.43183 3.47849 3.83654 4.05792 4.13905 4.27831 4.65638 4.70064 4.88537 5.04080 5.16663 5.31769 5.72071 5.87040 5.92398 5.93325 6.18455 6.43584 6.46913 6.78811 6.93095 6.99941 7.73262 7.86206 7.96288 8.21647 8.49021 8.60886 8.98052 9.32695 10.33235 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.020806 B = 0.007567 C = 0.006053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.449595 B = 3699.516623 C = 4624.449389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.170 4.170 3 C 0.207 3.793 4 N -0.449 5.449 5 C -0.343 4.343 6 H 0.113 0.887 7 C 0.064 3.936 8 N -0.847 5.847 9 Si 0.880 3.120 10 H -0.269 1.269 11 H -0.283 1.283 12 H -0.257 1.257 13 C 0.516 3.484 14 O -0.557 6.557 15 C 0.017 3.983 16 C -0.123 4.123 17 C 0.153 3.847 18 N -0.481 5.481 19 C 0.207 3.793 20 N -0.416 5.416 21 H 0.451 0.549 22 N -0.021 5.021 23 N -0.212 5.212 24 C -0.006 4.006 25 H 0.213 0.787 26 H 0.081 0.919 27 H 0.098 0.902 28 H 0.282 0.718 29 H 0.192 0.808 30 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.859 -0.263 4.626 6.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.171 4.171 3 C 0.086 3.914 4 N -0.170 5.170 5 C -0.470 4.470 6 H 0.131 0.869 7 C -0.146 4.146 8 N -0.480 5.480 9 Si 0.709 3.291 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.182 1.182 13 C 0.305 3.695 14 O -0.438 6.438 15 C 0.000 4.000 16 C -0.146 4.146 17 C -0.017 4.017 18 N -0.196 5.196 19 C -0.036 4.036 20 N -0.146 5.146 21 H 0.298 0.702 22 N -0.003 5.003 23 N -0.089 5.089 24 C -0.135 4.135 25 H 0.230 0.770 26 H 0.098 0.902 27 H 0.116 0.884 28 H 0.092 0.908 29 H 0.208 0.792 30 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 3.220 -1.274 5.955 6.889 hybrid contribution 0.410 0.269 -1.248 1.340 sum 3.630 -1.006 4.708 6.029 Atomic orbital electron populations 1.24677 0.95646 1.01930 1.01298 1.23535 0.94751 0.99188 0.99643 1.18776 0.84272 0.96052 0.92309 1.43541 1.56105 1.09366 1.07964 1.19285 1.42771 0.80939 1.03988 0.86933 1.25429 0.95384 0.96405 0.97368 1.69595 1.40435 1.15779 1.22234 0.86846 0.79046 0.82014 0.81232 1.19591 1.20948 1.18168 1.17827 0.82749 0.86082 0.82833 1.90750 1.53582 1.21133 1.78349 1.19581 0.96131 0.95184 0.89072 1.23425 0.93849 0.92594 1.04742 1.22921 0.95959 0.97450 0.85372 1.66292 1.17344 1.17435 1.18505 1.19810 0.99785 0.97807 0.86234 1.44513 1.34982 1.27553 1.07569 0.70187 1.78136 1.04668 1.02082 1.15430 1.75424 1.19161 1.19939 0.94375 1.20228 1.00518 0.97805 0.94955 0.76997 0.90229 0.88386 0.90760 0.79172 0.80689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.11 19.25 29.55 0.57 -3.54 16 2 C -0.17 -3.66 13.67 -37.12 -0.51 -4.17 16 3 C 0.21 4.50 4.24 -6.83 -0.03 4.47 16 4 N -0.45 -10.36 2.21 -119.08 -0.26 -10.62 16 5 C -0.34 -7.99 6.53 -15.03 -0.10 -8.09 16 6 H 0.11 2.79 7.03 -52.48 -0.37 2.42 16 7 C 0.06 1.47 5.25 -17.44 -0.09 1.38 16 8 N -0.85 -20.48 13.95 55.51 0.77 -19.70 16 9 Si 0.88 17.93 24.57 -169.99 -4.18 13.76 16 10 H -0.27 -5.44 6.94 56.52 0.39 -5.05 16 11 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 12 H -0.26 -5.12 6.61 56.52 0.37 -4.74 16 13 C 0.52 12.17 7.41 -12.40 -0.09 12.08 16 14 O -0.56 -14.41 16.31 5.28 0.09 -14.33 16 15 C 0.02 0.35 5.58 -104.51 -0.58 -0.23 16 16 C -0.12 -2.20 8.12 -38.97 -0.32 -2.52 16 17 C 0.15 2.31 11.14 -17.52 -0.20 2.12 16 18 N -0.48 -7.75 10.36 -12.40 -0.13 -7.88 16 19 C 0.21 3.60 8.56 -156.21 -1.34 2.26 16 20 N -0.42 -6.05 7.06 31.11 0.22 -5.83 16 21 H 0.45 4.38 8.96 -190.25 -1.71 2.68 16 22 N -0.02 -0.36 13.29 60.35 0.80 0.44 16 23 N -0.21 -4.51 12.15 32.24 0.39 -4.12 16 24 C -0.01 -0.13 6.97 -84.71 -0.59 -0.72 16 25 H 0.21 3.02 7.80 -54.08 -0.42 2.60 16 26 H 0.08 1.69 2.33 -51.93 -0.12 1.57 16 27 H 0.10 2.02 7.61 -51.93 -0.39 1.63 16 28 H 0.28 6.36 8.31 -40.82 -0.34 6.02 16 29 H 0.19 3.52 5.41 -52.49 -0.28 3.24 16 30 H 0.18 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 272.76 15.07 4.11 4.11 Total: -1.00 -30.18 272.76 -4.35 -34.53 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -2.89 Total: 6.61 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -3.27 Total: 3.03 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: 1.80 Total: -47.71 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: 0.09 Total: -14.33 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -4.18 Total: 13.76 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.18 -4.35 -34.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625878437.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.003 kcal (2) G-P(sol) polarization free energy of solvation -30.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 185.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 181.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds