Wall clock time and date at job start Mon Mar 30 2020 01:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46493 * 109.46974 * 229.32764 * 3 2 1 5 5 C 1.36730 * 119.99791 * 270.25807 * 4 3 2 6 6 H 1.08005 * 120.00193 * 142.62163 * 5 4 3 7 7 C 1.39140 * 120.00104 * 322.34177 * 5 4 3 8 8 N 1.31304 * 120.00056 * 169.94892 * 7 5 4 9 9 Si 1.86801 * 119.99889 * 349.94285 * 7 5 4 10 10 H 1.48506 * 109.46700 * 95.48322 * 9 7 5 11 11 H 1.48501 * 109.47390 * 215.48216 * 9 7 5 12 12 H 1.48498 * 109.47248 * 335.48953 * 9 7 5 13 13 C 1.34777 * 120.00189 * 90.25337 * 4 3 2 14 14 O 1.21599 * 119.99967 * 348.18238 * 13 4 3 15 15 C 1.47689 * 119.99960 * 168.17834 * 13 4 3 16 16 C 1.39577 * 121.12196 * 335.99552 * 15 13 4 17 17 C 1.38555 * 119.36332 * 179.67000 * 16 15 13 18 18 N 1.31625 * 121.64330 * 0.66344 * 17 16 15 19 19 C 1.32231 * 121.88959 * 359.64320 * 18 17 16 20 20 N 1.37205 * 134.66834 * 179.97438 * 19 18 17 21 21 H 0.97004 * 125.86883 * 359.97099 * 20 19 18 22 22 N 1.28783 * 108.26203 * 180.02562 * 20 19 18 23 23 N 1.28696 * 111.74621 * 359.97438 * 22 20 19 24 24 C 1.34369 * 109.14961 * 0.02562 * 23 22 20 25 25 H 4.40639 * 5.51406 * 179.97438 * 4 1 2 26 26 H 1.09004 * 109.46533 * 109.32686 * 3 2 1 27 27 H 1.08998 * 109.47438 * 349.32781 * 3 2 1 28 28 H 0.96997 * 119.99873 * 180.02562 * 8 7 5 29 29 H 1.07998 * 120.32098 * 359.97438 * 16 15 13 30 30 H 1.08001 * 119.17994 * 180.31160 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.9010 1.0475 5 6 3.3561 2.2204 0.7660 6 1 3.1246 2.9762 1.5020 7 6 3.8860 2.5891 -0.4666 8 7 3.9166 3.8544 -0.8161 9 14 4.5541 1.2840 -1.6241 10 1 3.5020 0.9030 -2.6005 11 1 5.7320 1.8226 -2.3506 12 1 4.9592 0.0888 -0.8415 13 6 3.3636 0.4289 2.2888 14 8 2.9689 -0.6781 2.6009 15 6 4.0948 1.2560 3.2699 16 6 4.9692 2.2621 2.8560 17 6 5.6312 3.0208 3.8078 18 7 5.4666 2.8089 5.0965 19 6 4.6574 1.8674 5.5518 20 7 4.2953 1.4277 6.8000 21 1 4.6170 1.7831 7.6434 22 7 3.4559 0.4611 6.6596 23 7 3.2198 0.2110 5.4195 24 6 3.9372 1.0523 4.6558 25 1 -1.0501 0.0000 -0.0003 26 1 3.0091 0.3410 -0.9698 27 1 3.0099 -1.0090 0.1903 28 1 4.2857 4.1114 -1.6755 29 1 5.1246 2.4507 1.8041 30 1 6.3033 3.8019 3.4843 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001625878437.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:31 Heat of formation + Delta-G solvation = 159.644472 kcal Electronic energy + Delta-G solvation = -20138.372774 eV Core-core repulsion = 16938.363980 eV Total energy + Delta-G solvation = -3200.008795 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.42073 -41.18221 -39.59828 -37.29249 -35.27528 -34.54692 -33.70504 -32.68552 -31.76863 -28.86774 -27.35270 -25.95683 -24.77400 -24.03528 -21.72084 -20.46509 -19.95238 -19.39703 -18.48013 -18.02944 -17.62434 -17.51507 -16.59929 -16.24595 -15.77468 -15.51123 -15.05448 -14.54672 -14.42233 -14.13506 -14.00172 -13.72935 -13.43504 -12.95672 -12.77431 -12.59732 -12.44791 -11.95502 -11.53669 -11.32778 -11.13734 -10.90134 -10.41255 -10.20201 -10.05669 -9.99426 -8.52570 -6.20068 -0.92414 -0.02565 1.05429 1.18896 1.23615 1.36614 1.42165 1.55544 1.83641 1.89036 2.14748 2.52293 2.63266 2.83157 2.94583 3.29545 3.47677 3.53717 3.73547 3.90803 4.04302 4.29404 4.44384 4.53106 4.62175 5.01002 5.09907 5.22808 5.42842 5.77003 5.93314 6.13411 6.51447 6.66430 6.81751 7.07800 7.18808 7.55284 8.57574 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.020806 B = 0.007567 C = 0.006053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.449595 B = 3699.516623 C = 4624.449389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.235 4.235 3 C 0.202 3.798 4 N -0.453 5.453 5 C -0.342 4.342 6 H 0.092 0.908 7 C 0.041 3.959 8 N -0.876 5.876 9 Si 0.920 3.080 10 H -0.266 1.266 11 H -0.273 1.273 12 H -0.255 1.255 13 C 0.509 3.491 14 O -0.590 6.590 15 C -0.021 4.021 16 C -0.108 4.108 17 C 0.170 3.830 18 N -0.464 5.464 19 C 0.205 3.795 20 N -0.382 5.382 21 H 0.474 0.526 22 N -0.011 5.011 23 N -0.263 5.263 24 C -0.029 4.029 25 H 0.257 0.743 26 H 0.084 0.916 27 H 0.098 0.902 28 H 0.287 0.713 29 H 0.185 0.815 30 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.614 0.628 5.088 6.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.236 4.236 3 C 0.081 3.919 4 N -0.173 5.173 5 C -0.469 4.469 6 H 0.109 0.891 7 C -0.166 4.166 8 N -0.511 5.511 9 Si 0.746 3.254 10 H -0.193 1.193 11 H -0.199 1.199 12 H -0.180 1.180 13 C 0.300 3.700 14 O -0.474 6.474 15 C -0.036 4.036 16 C -0.131 4.131 17 C -0.002 4.002 18 N -0.179 5.179 19 C -0.038 4.038 20 N -0.116 5.116 21 H 0.326 0.674 22 N 0.007 4.993 23 N -0.139 5.139 24 C -0.159 4.159 25 H 0.273 0.727 26 H 0.101 0.899 27 H 0.116 0.884 28 H 0.098 0.902 29 H 0.202 0.798 30 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 3.975 -0.375 6.449 7.585 hybrid contribution 0.142 0.053 -1.277 1.286 sum 4.117 -0.322 5.173 6.619 Atomic orbital electron populations 1.25734 0.96619 0.99124 0.98494 1.23862 0.95594 1.01838 1.02282 1.18813 0.85182 0.95842 0.92047 1.43599 1.56152 1.09351 1.08191 1.19020 1.43388 0.80675 1.03856 0.89078 1.25787 0.95152 0.97580 0.98091 1.69641 1.41438 1.16971 1.23044 0.86200 0.78886 0.80389 0.79881 1.19293 1.19913 1.17953 1.18308 0.82377 0.86022 0.83324 1.90698 1.55061 1.22663 1.79026 1.19550 0.98061 0.96993 0.89031 1.23431 0.92970 0.91619 1.05109 1.23638 0.95156 0.97061 0.84328 1.66508 1.16344 1.16276 1.18728 1.19893 0.99714 0.97688 0.86499 1.44507 1.33209 1.25984 1.07940 0.67392 1.78031 1.04639 1.02309 1.14359 1.75397 1.21241 1.21782 0.95450 1.20417 1.01414 0.98700 0.95333 0.72680 0.89889 0.88367 0.90244 0.79824 0.75854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.61 19.25 74.32 1.43 -5.18 16 2 C -0.23 -10.13 13.67 31.13 0.43 -9.70 16 3 C 0.20 8.94 4.24 84.58 0.36 9.29 16 4 N -0.45 -21.35 2.21 -648.91 -1.44 -22.79 16 5 C -0.34 -16.21 6.53 84.15 0.55 -15.66 16 6 H 0.09 4.64 7.03 -2.91 -0.02 4.62 16 7 C 0.04 1.90 5.25 84.99 0.45 2.35 16 8 N -0.88 -42.17 13.95 21.69 0.30 -41.87 16 9 Si 0.92 36.39 24.57 68.60 1.69 38.08 16 10 H -0.27 -10.38 6.94 99.48 0.69 -9.69 16 11 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 12 H -0.26 -9.94 6.61 99.48 0.66 -9.29 16 13 C 0.51 24.79 7.41 86.74 0.64 25.43 16 14 O -0.59 -31.79 16.31 -4.03 -0.07 -31.86 16 15 C -0.02 -0.88 5.58 -19.79 -0.11 -0.99 16 16 C -0.11 -3.79 8.12 22.67 0.18 -3.60 16 17 C 0.17 4.63 11.14 84.80 0.94 5.57 16 18 N -0.46 -13.58 10.36 -193.14 -2.00 -15.58 16 19 C 0.21 6.77 8.56 134.16 1.15 7.92 16 20 N -0.38 -10.33 7.06 -55.49 -0.39 -10.72 16 21 H 0.47 7.79 8.96 -219.83 -1.97 5.82 16 22 N -0.01 -0.36 13.29 37.02 0.49 0.13 16 23 N -0.26 -11.29 12.15 -51.91 -0.63 -11.92 16 24 C -0.03 -1.22 6.97 40.08 0.28 -0.94 16 25 H 0.26 6.40 7.80 -4.41 -0.03 6.37 16 26 H 0.08 3.52 2.33 -2.39 -0.01 3.52 16 27 H 0.10 4.20 7.61 -2.39 -0.02 4.18 16 28 H 0.29 12.81 8.31 -92.71 -0.77 12.04 16 29 H 0.18 6.74 5.41 -2.91 -0.02 6.73 16 30 H 0.23 3.89 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -66.89 272.76 3.45 -63.44 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -0.80 Total: 18.57 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: 6.30 Total: 14.50 kcal Atomic # 7 Polarization: -99.08 SS G_CDS: -3.66 Total: -102.74 kcal Atomic # 8 Polarization: -31.79 SS G_CDS: -0.07 Total: -31.86 kcal Atomic # 14 Polarization: 36.39 SS G_CDS: 1.69 Total: 38.08 kcal Total: -66.89 3.45 -63.44 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625878437.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.087 kcal (2) G-P(sol) polarization free energy of solvation -66.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds