Wall clock time and date at job start Mon Mar 30 2020 01:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 120.00538 * 2 1 4 4 H 1.48493 * 109.47671 * 240.00154 * 3 2 1 5 5 H 1.48505 * 109.47061 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46921 * 119.99724 * 3 2 1 7 7 C 1.37882 * 119.99239 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99654 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00544 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47326 * 180.02562 * 9 7 2 11 11 C 1.34774 * 119.99859 * 180.02562 * 10 9 7 12 12 O 1.21599 * 120.00135 * 359.97438 * 11 10 9 13 13 C 1.47497 * 120.00008 * 179.97438 * 11 10 9 14 14 C 1.38721 * 120.37427 * 301.69040 * 13 11 10 15 15 C 1.38911 * 120.62976 * 179.71839 * 14 13 11 16 16 C 1.36269 * 121.16650 * 0.28162 * 15 14 13 17 17 C 1.40591 * 120.13296 * 359.97201 * 16 15 14 18 18 C 1.40592 * 121.08563 * 180.02562 * 17 16 15 19 19 C 1.36130 * 119.91689 * 179.97438 * 18 17 16 20 20 C 1.39204 * 121.02403 * 0.02562 * 19 18 17 21 21 C 1.37736 * 120.72309 * 359.97438 * 20 19 18 22 22 O 1.35839 * 120.26849 * 179.97438 * 21 20 19 23 23 C 1.40637 * 119.46826 * 359.97438 * 21 20 19 24 24 H 0.97000 * 119.99221 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47462 * 59.99508 * 9 7 2 26 26 H 1.09008 * 109.46583 * 299.99909 * 9 7 2 27 27 H 0.96995 * 119.99661 * 359.97438 * 10 9 7 28 28 H 1.07998 * 119.68538 * 0.02562 * 14 13 11 29 29 H 1.07995 * 119.41656 * 180.25047 * 15 14 13 30 30 H 1.08000 * 119.93627 * 179.97438 * 16 15 14 31 31 H 1.08000 * 120.04210 * 359.95954 * 18 17 16 32 32 H 1.07999 * 119.48654 * 179.97438 * 19 18 17 33 33 H 1.08007 * 119.63534 * 180.02562 * 20 19 18 34 34 H 0.96703 * 113.99875 * 84.72357 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1031 1.6963 -1.2124 5 1 1.2844 2.7464 0.0006 6 1 3.1030 1.6962 1.2126 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1943 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 7 2.2029 -3.6128 -0.0015 11 6 1.7535 -4.8834 -0.0029 12 8 0.5579 -5.1055 -0.0039 13 6 2.7119 -6.0046 -0.0032 14 6 3.6462 -6.1284 -1.0211 15 6 4.5551 -7.1789 -1.0235 16 6 4.5518 -8.1167 -0.0348 17 6 3.6189 -8.0334 1.0137 18 6 3.5979 -8.9895 2.0443 19 6 2.6846 -8.8856 3.0483 20 6 1.7629 -7.8428 3.0747 21 6 1.7528 -6.8873 2.0826 22 8 0.8489 -5.8739 2.1172 23 6 2.6858 -6.9693 1.0336 24 1 -0.4849 0.8401 0.0004 25 1 0.6245 -2.5564 -0.8919 26 1 0.6239 -2.5574 0.8881 27 1 3.1565 -3.4356 -0.0010 28 1 3.6705 -5.3983 -1.8165 29 1 5.2767 -7.2541 -1.8235 30 1 5.2672 -8.9254 -0.0567 31 1 4.3054 -9.8056 2.0392 32 1 2.6744 -9.6242 3.8362 33 1 1.0483 -7.7818 3.8823 34 1 1.1216 -5.1220 2.6608 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001626390853.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:13 Heat of formation + Delta-G solvation = -36.568184 kcal Electronic energy + Delta-G solvation = -19913.225403 eV Core-core repulsion = 16775.955781 eV Total energy + Delta-G solvation = -3137.269622 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.71035 -38.35488 -37.47498 -35.65271 -34.10284 -32.38414 -31.74507 -30.40394 -28.82882 -27.13539 -24.13250 -23.08778 -22.88301 -21.76809 -19.78467 -18.29357 -17.49281 -17.28608 -16.42389 -16.04565 -15.24956 -15.17622 -14.79972 -14.57630 -14.10598 -13.94788 -13.58596 -13.16463 -12.97786 -12.75673 -12.21639 -11.95521 -11.78715 -11.54514 -11.41987 -11.21454 -10.99495 -10.87977 -10.33582 -10.14560 -9.69607 -9.40013 -9.00242 -8.71888 -8.70279 -7.85467 -7.70664 -6.16517 -4.23542 0.37130 0.96150 1.86041 2.86605 3.24981 3.30078 3.31371 3.48165 3.96503 4.10308 4.29209 4.36275 4.64826 4.82264 4.94260 5.06029 5.08893 5.19475 5.31397 5.36816 5.45340 5.64721 5.88283 6.02010 6.05557 6.15617 6.32190 6.43889 6.55333 6.66231 6.88001 7.32047 7.45961 7.52504 7.67778 7.90579 7.97349 8.63834 8.79499 9.14002 9.43383 10.93500 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.026740 B = 0.004652 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.857777 B = 6018.111593 C = 6554.846831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.252 3.748 10 N -0.710 5.710 11 C 0.539 3.461 12 O -0.515 6.515 13 C -0.086 4.086 14 C -0.096 4.096 15 C -0.109 4.109 16 C -0.106 4.106 17 C -0.038 4.038 18 C -0.126 4.126 19 C -0.097 4.097 20 C -0.160 4.160 21 C 0.138 3.862 22 O -0.464 6.464 23 C -0.051 4.051 24 H 0.266 0.734 25 H 0.026 0.974 26 H 0.028 0.972 27 H 0.389 0.611 28 H 0.132 0.868 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.693 -16.129 3.762 19.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.730 3.270 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.080 0.920 9 C 0.132 3.868 10 N -0.359 5.359 11 C 0.323 3.677 12 O -0.392 6.392 13 C -0.089 4.089 14 C -0.115 4.115 15 C -0.127 4.127 16 C -0.124 4.124 17 C -0.038 4.038 18 C -0.144 4.144 19 C -0.115 4.115 20 C -0.179 4.179 21 C 0.092 3.908 22 O -0.274 6.274 23 C -0.052 4.052 24 H 0.076 0.924 25 H 0.044 0.956 26 H 0.046 0.954 27 H 0.222 0.778 28 H 0.150 0.850 29 H 0.146 0.854 30 H 0.147 0.853 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.147 0.853 34 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 9.282 -16.466 3.396 19.205 hybrid contribution 1.116 1.314 0.258 1.743 sum 10.397 -15.153 3.653 18.737 Atomic orbital electron populations 1.69970 1.06084 1.27396 1.48773 1.24941 0.94893 0.99381 0.94707 0.86488 0.79424 0.82385 0.78683 1.20076 1.21073 1.20098 1.21190 0.93210 0.90468 1.53362 0.92007 1.19095 0.88206 0.81721 0.97808 1.46471 1.11051 1.05656 1.72763 1.18014 0.88096 0.82950 0.78690 1.90810 1.15427 1.84463 1.48453 1.20331 0.96508 0.96527 0.95577 1.21319 0.93648 0.98483 0.98062 1.20785 0.98712 0.94469 0.98775 1.21059 0.98123 0.99327 0.93911 1.17900 0.95554 0.94476 0.95904 1.20929 1.00168 0.98847 0.94445 1.20662 0.94831 0.97575 0.98453 1.21430 1.00589 0.96442 0.99433 1.18562 0.88427 0.91085 0.92677 1.85155 1.41212 1.28297 1.72781 1.18223 0.95722 0.95425 0.95854 0.92396 0.95561 0.95417 0.77811 0.85049 0.85445 0.85346 0.85469 0.85733 0.85291 0.75523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.89 13.29 55.43 0.74 -25.16 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.54 -14.59 9.28 -34.44 -0.32 -14.91 16 8 H 0.06 1.55 7.60 -52.48 -0.40 1.15 16 9 C 0.25 6.61 5.43 -5.19 -0.03 6.58 16 10 N -0.71 -15.04 5.54 -62.54 -0.35 -15.39 16 11 C 0.54 11.28 5.80 -12.49 -0.07 11.21 16 12 O -0.52 -12.92 14.64 -18.99 -0.28 -13.19 16 13 C -0.09 -1.48 5.66 -104.65 -0.59 -2.07 16 14 C -0.10 -1.36 9.75 -39.15 -0.38 -1.74 16 15 C -0.11 -1.23 9.92 -40.04 -0.40 -1.63 16 16 C -0.11 -1.17 9.74 -39.40 -0.38 -1.55 16 17 C -0.04 -0.50 5.74 -106.86 -0.61 -1.12 16 18 C -0.13 -1.36 9.75 -39.45 -0.38 -1.75 16 19 C -0.10 -1.05 9.94 -39.98 -0.40 -1.45 16 20 C -0.16 -2.08 9.95 -39.41 -0.39 -2.47 16 21 C 0.14 2.23 6.66 -38.86 -0.26 1.97 16 22 O -0.46 -8.43 9.15 -43.51 -0.40 -8.83 16 23 C -0.05 -0.83 5.77 -106.44 -0.61 -1.44 16 24 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.03 0.79 8.14 -51.92 -0.42 0.37 16 27 H 0.39 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 29 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 30 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 31 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 32 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 33 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 34 H 0.39 5.86 9.06 45.56 0.41 6.27 16 LS Contribution 300.24 15.07 4.52 4.52 Total: -1.00 -33.51 300.24 -8.56 -42.07 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -2.84 Total: 8.99 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -4.93 Total: -8.69 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.39 Total: -40.55 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.68 Total: -22.02 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.51 -8.56 -42.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626390853.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.504 kcal (2) G-P(sol) polarization free energy of solvation -33.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds