Wall clock time and date at job start Mon Mar 30 2020 01:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 120.00538 * 2 1 4 4 H 1.48493 * 109.47671 * 240.00154 * 3 2 1 5 5 H 1.48505 * 109.47061 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46921 * 119.99724 * 3 2 1 7 7 C 1.37882 * 119.99239 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99654 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00544 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47326 * 180.02562 * 9 7 2 11 11 C 1.34774 * 119.99859 * 180.02562 * 10 9 7 12 12 O 1.21599 * 120.00135 * 359.97438 * 11 10 9 13 13 C 1.47497 * 120.00008 * 179.97438 * 11 10 9 14 14 C 1.38721 * 120.37427 * 301.69040 * 13 11 10 15 15 C 1.38911 * 120.62976 * 179.71839 * 14 13 11 16 16 C 1.36269 * 121.16650 * 0.28162 * 15 14 13 17 17 C 1.40591 * 120.13296 * 359.97201 * 16 15 14 18 18 C 1.40592 * 121.08563 * 180.02562 * 17 16 15 19 19 C 1.36130 * 119.91689 * 179.97438 * 18 17 16 20 20 C 1.39204 * 121.02403 * 0.02562 * 19 18 17 21 21 C 1.37736 * 120.72309 * 359.97438 * 20 19 18 22 22 O 1.35839 * 120.26849 * 179.97438 * 21 20 19 23 23 C 1.40637 * 119.46826 * 359.97438 * 21 20 19 24 24 H 0.97000 * 119.99221 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47462 * 59.99508 * 9 7 2 26 26 H 1.09008 * 109.46583 * 299.99909 * 9 7 2 27 27 H 0.96995 * 119.99661 * 359.97438 * 10 9 7 28 28 H 1.07998 * 119.68538 * 0.02562 * 14 13 11 29 29 H 1.07995 * 119.41656 * 180.25047 * 15 14 13 30 30 H 1.08000 * 119.93627 * 179.97438 * 16 15 14 31 31 H 1.08000 * 120.04210 * 359.95954 * 18 17 16 32 32 H 1.07999 * 119.48654 * 179.97438 * 19 18 17 33 33 H 1.08007 * 119.63534 * 180.02562 * 20 19 18 34 34 H 0.96703 * 113.99875 * 84.72357 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1031 1.6963 -1.2124 5 1 1.2844 2.7464 0.0006 6 1 3.1030 1.6962 1.2126 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1943 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 7 2.2029 -3.6128 -0.0015 11 6 1.7535 -4.8834 -0.0029 12 8 0.5579 -5.1055 -0.0039 13 6 2.7119 -6.0046 -0.0032 14 6 3.6462 -6.1284 -1.0211 15 6 4.5551 -7.1789 -1.0235 16 6 4.5518 -8.1167 -0.0348 17 6 3.6189 -8.0334 1.0137 18 6 3.5979 -8.9895 2.0443 19 6 2.6846 -8.8856 3.0483 20 6 1.7629 -7.8428 3.0747 21 6 1.7528 -6.8873 2.0826 22 8 0.8489 -5.8739 2.1172 23 6 2.6858 -6.9693 1.0336 24 1 -0.4849 0.8401 0.0004 25 1 0.6245 -2.5564 -0.8919 26 1 0.6239 -2.5574 0.8881 27 1 3.1565 -3.4356 -0.0010 28 1 3.6705 -5.3983 -1.8165 29 1 5.2767 -7.2541 -1.8235 30 1 5.2672 -8.9254 -0.0567 31 1 4.3054 -9.8056 2.0392 32 1 2.6744 -9.6242 3.8362 33 1 1.0483 -7.7818 3.8823 34 1 1.1216 -5.1220 2.6608 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001626390853.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:12 Heat of formation + Delta-G solvation = -60.090549 kcal Electronic energy + Delta-G solvation = -19914.245409 eV Core-core repulsion = 16775.955781 eV Total energy + Delta-G solvation = -3138.289628 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.83783 -39.94243 -38.61610 -36.72785 -36.08270 -34.34011 -32.94165 -31.37804 -30.06051 -28.96907 -25.59599 -24.36188 -24.03152 -23.21603 -21.36166 -19.68029 -18.74368 -18.47930 -17.85491 -17.41743 -17.00413 -16.61815 -16.12428 -15.98412 -15.51735 -15.27955 -14.73730 -14.61808 -14.24440 -14.03402 -13.86674 -13.62671 -13.11221 -12.96598 -12.70193 -12.57668 -12.45885 -12.24826 -12.14045 -11.52721 -11.32323 -10.85795 -10.78689 -10.62394 -9.81445 -9.67930 -8.73407 -8.29156 -6.46210 -0.65019 -0.01298 0.80043 1.42368 1.46547 1.54860 1.79634 2.02643 2.31974 2.56960 2.98407 3.05485 3.24434 3.70115 3.86106 3.90937 4.03015 4.21906 4.29434 4.40208 4.54557 4.62876 4.86253 5.02694 5.09679 5.12264 5.24069 5.25186 5.37574 5.47743 5.48550 5.56400 5.68348 5.76193 5.84085 5.96736 6.63670 6.72693 6.89944 7.22872 7.49053 8.82744 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.026740 B = 0.004652 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.857777 B = 6018.111593 C = 6554.846831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.006 3.994 3 Si 0.985 3.015 4 H -0.262 1.262 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.557 4.557 8 H 0.082 0.918 9 C 0.271 3.729 10 N -0.703 5.703 11 C 0.546 3.454 12 O -0.568 6.568 13 C -0.133 4.133 14 C -0.084 4.084 15 C -0.117 4.117 16 C -0.079 4.079 17 C -0.059 4.059 18 C -0.105 4.105 19 C -0.104 4.104 20 C -0.148 4.148 21 C 0.080 3.920 22 O -0.493 6.493 23 C -0.068 4.068 24 H 0.269 0.731 25 H -0.016 1.016 26 H -0.009 1.009 27 H 0.404 0.596 28 H 0.134 0.866 29 H 0.168 0.832 30 H 0.177 0.823 31 H 0.173 0.827 32 H 0.163 0.837 33 H 0.138 0.862 34 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.841 -18.343 3.913 23.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.808 3.192 4 H -0.187 1.187 5 H -0.210 1.210 6 H -0.187 1.187 7 C -0.594 4.594 8 H 0.100 0.900 9 C 0.149 3.851 10 N -0.353 5.353 11 C 0.333 3.667 12 O -0.448 6.448 13 C -0.136 4.136 14 C -0.103 4.103 15 C -0.135 4.135 16 C -0.097 4.097 17 C -0.059 4.059 18 C -0.122 4.122 19 C -0.122 4.122 20 C -0.166 4.166 21 C 0.035 3.965 22 O -0.303 6.303 23 C -0.070 4.070 24 H 0.078 0.922 25 H 0.002 0.998 26 H 0.009 0.991 27 H 0.239 0.761 28 H 0.152 0.848 29 H 0.185 0.815 30 H 0.194 0.806 31 H 0.191 0.809 32 H 0.181 0.819 33 H 0.156 0.844 34 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 13.481 -18.715 3.544 23.336 hybrid contribution -0.127 1.804 0.242 1.825 sum 13.355 -16.910 3.787 21.878 Atomic orbital electron populations 1.70144 1.08277 1.28621 1.49826 1.26053 0.95744 1.03822 0.93773 0.85211 0.77922 0.76605 0.79501 1.18656 1.21015 1.18663 1.21558 0.94174 0.90549 1.53151 0.90046 1.18524 0.88496 0.83960 0.94131 1.46176 1.10893 1.05057 1.73170 1.18642 0.88218 0.83490 0.76368 1.90754 1.18196 1.85254 1.50546 1.19947 0.98333 0.96519 0.98818 1.21562 0.92812 0.99324 0.96593 1.21162 0.98621 0.93387 1.00280 1.21640 0.96882 0.99406 0.91723 1.18319 0.95574 0.94238 0.97789 1.21469 0.99797 0.98426 0.92536 1.21092 0.93960 0.97388 0.99761 1.21716 1.00678 0.95882 0.98323 1.18967 0.90291 0.92095 0.95100 1.85153 1.42790 1.29178 1.73204 1.18464 0.96735 0.96319 0.95442 0.92238 0.99774 0.99101 0.76128 0.84777 0.81494 0.80584 0.80929 0.81907 0.84391 0.75795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.85 13.29 21.45 0.28 -56.56 16 2 C 0.01 0.33 5.46 84.65 0.46 0.79 16 3 Si 0.98 42.69 29.54 68.60 2.03 44.71 16 4 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 7 C -0.56 -30.84 9.28 25.60 0.24 -30.61 16 8 H 0.08 4.09 7.60 -2.91 -0.02 4.07 16 9 C 0.27 15.38 5.43 85.63 0.46 15.84 16 10 N -0.70 -32.00 5.54 -470.03 -2.61 -34.60 16 11 C 0.55 24.80 5.80 86.68 0.50 25.30 16 12 O -0.57 -31.35 14.64 19.18 0.28 -31.07 16 13 C -0.13 -4.75 5.66 -19.88 -0.11 -4.86 16 14 C -0.08 -2.30 9.75 22.55 0.22 -2.08 16 15 C -0.12 -2.18 9.92 21.97 0.22 -1.96 16 16 C -0.08 -1.33 9.74 22.38 0.22 -1.12 16 17 C -0.06 -1.37 5.74 -21.32 -0.12 -1.49 16 18 C -0.10 -1.77 9.75 22.35 0.22 -1.55 16 19 C -0.10 -1.89 9.94 22.01 0.22 -1.67 16 20 C -0.15 -3.78 9.95 22.38 0.22 -3.55 16 21 C 0.08 2.73 6.66 22.74 0.15 2.88 16 22 O -0.49 -20.04 9.15 -68.54 -0.63 -20.67 16 23 C -0.07 -2.24 5.77 -21.04 -0.12 -2.36 16 24 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 25 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 26 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 27 H 0.40 15.74 8.31 -92.71 -0.77 14.97 16 28 H 0.13 3.44 8.06 -2.91 -0.02 3.42 16 29 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 30 H 0.18 1.34 8.06 -2.91 -0.02 1.32 16 31 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 32 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 33 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 34 H 0.39 13.76 9.06 -74.06 -0.67 13.09 16 Total: -1.00 -80.33 300.24 1.84 -78.49 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: -0.29 Total: 26.14 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: 2.78 Total: -6.44 kcal Atomic # 7 Polarization: -88.84 SS G_CDS: -2.32 Total: -91.16 kcal Atomic # 8 Polarization: -51.39 SS G_CDS: -0.35 Total: -51.74 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Total: -80.33 1.84 -78.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626390853.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.399 kcal (2) G-P(sol) polarization free energy of solvation -80.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds