Wall clock time and date at job start Mon Mar 30 2020 00:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00303 * 2 1 4 4 H 1.48507 * 109.46990 * 270.00193 * 3 2 1 5 5 H 1.48496 * 109.46902 * 30.00126 * 3 2 1 6 6 H 1.48499 * 109.47005 * 150.00188 * 3 2 1 7 7 C 1.37881 * 119.99861 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99925 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00308 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47621 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47621 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99708 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00394 * 180.02562 * 11 10 9 14 14 N 1.40102 * 120.00462 * 180.02562 * 13 11 10 15 15 C 1.39287 * 120.00445 * 180.02562 * 14 13 11 16 16 N 1.32326 * 119.68719 * 359.97438 * 15 14 13 17 17 C 1.32005 * 121.67039 * 180.02562 * 16 15 14 18 18 C 1.38235 * 120.85970 * 0.02562 * 17 16 15 19 19 F 1.35095 * 120.34752 * 180.02562 * 18 17 16 20 20 C 1.39011 * 119.29652 * 359.97438 * 18 17 16 21 21 C 1.38495 * 118.47026 * 0.02562 * 20 18 17 22 22 F 1.35098 * 120.46065 * 179.97438 * 21 20 18 23 23 H 0.96999 * 119.99711 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46943 * 59.99673 * 9 7 2 25 25 H 1.09007 * 109.47211 * 299.99912 * 9 7 2 26 26 H 1.09008 * 109.46955 * 60.00204 * 10 9 7 27 27 H 1.08999 * 109.47025 * 300.00538 * 10 9 7 28 28 H 0.97003 * 120.00114 * 359.97438 * 13 11 10 29 29 H 0.97003 * 119.99424 * 359.97438 * 14 13 11 30 30 H 1.08001 * 119.57054 * 180.28248 * 17 16 15 31 31 H 1.08005 * 120.76700 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1942 -0.0011 10 6 4.0215 -2.6367 -0.0010 11 6 5.5284 -2.6368 -0.0022 12 8 6.1348 -1.5865 -0.0026 13 7 6.2022 -3.8040 -0.0028 14 7 7.6033 -3.8041 -0.0034 15 6 8.2997 -5.0104 -0.0046 16 7 7.6318 -6.1527 -0.0047 17 6 8.2518 -7.3181 -0.0053 18 6 9.6325 -7.3866 -0.0054 19 9 10.2564 -8.5849 -0.0065 20 6 10.3720 -6.2096 -0.0053 21 6 9.6924 -5.0029 -0.0047 22 9 10.3709 -3.8346 -0.0041 23 1 -0.4850 0.8401 -0.0004 24 1 3.8751 -0.6806 0.8888 25 1 3.8745 -0.6802 -0.8912 26 1 3.6578 -3.1507 -0.8908 27 1 3.6584 -3.1503 0.8892 28 1 5.7172 -4.6440 -0.0021 29 1 8.0883 -2.9640 -0.0038 30 1 7.6729 -8.2298 -0.0099 31 1 11.4518 -6.2354 -0.0050 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001629280680.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:02 Heat of formation + Delta-G solvation = -55.421303 kcal Electronic energy + Delta-G solvation = -19399.591336 eV Core-core repulsion = 15739.567404 eV Total energy + Delta-G solvation = -3660.023933 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.36545 -49.25415 -40.61496 -39.42596 -36.18032 -33.60848 -32.67494 -32.36538 -31.24443 -28.78576 -26.11678 -24.44014 -23.38951 -21.73394 -20.30624 -18.76114 -18.58726 -18.39317 -17.20584 -16.70680 -16.64255 -16.22665 -15.75716 -15.70116 -15.34827 -15.07296 -14.42161 -14.13360 -14.10599 -13.66742 -13.63844 -12.94010 -12.76390 -12.62302 -11.81220 -11.51969 -11.03260 -10.41340 -10.29630 -10.28725 -10.15727 -9.88559 -9.58793 -9.56992 -9.25967 -8.56100 -7.68997 -6.07975 -4.07651 0.38823 0.54675 1.69088 2.79262 3.07742 3.30103 3.34254 3.41309 3.50834 3.53439 3.62903 4.12147 4.27693 4.46043 4.66646 4.92439 5.14421 5.26411 5.27226 5.29243 5.89723 5.94291 5.99651 6.36068 6.57045 6.88355 7.24778 7.32309 7.34141 7.60271 7.71477 8.38342 8.47710 8.94387 9.54284 11.04651 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.043472 B = 0.003233 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.938732 B = 8659.038168 C = 9282.529771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.070 3.930 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.527 4.527 8 H 0.075 0.925 9 C 0.002 3.998 10 C -0.109 4.109 11 C 0.511 3.489 12 O -0.539 6.539 13 N -0.526 5.526 14 N -0.507 5.507 15 C 0.382 3.618 16 N -0.500 5.500 17 C 0.132 3.868 18 C 0.005 3.995 19 F -0.129 7.129 20 C -0.091 4.091 21 C 0.011 3.989 22 F -0.124 7.124 23 H 0.264 0.736 24 H 0.026 0.974 25 H 0.021 0.979 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.432 0.568 29 H 0.446 0.554 30 H 0.179 0.821 31 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.377 -16.048 0.019 25.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.565 4.565 8 H 0.093 0.907 9 C -0.036 4.036 10 C -0.150 4.150 11 C 0.299 3.701 12 O -0.413 6.413 13 N -0.276 5.276 14 N -0.233 5.233 15 C 0.142 3.858 16 N -0.218 5.218 17 C -0.028 4.028 18 C -0.020 4.020 19 F -0.108 7.108 20 C -0.118 4.118 21 C -0.017 4.017 22 F -0.103 7.103 23 H 0.074 0.926 24 H 0.044 0.956 25 H 0.039 0.961 26 H 0.112 0.888 27 H 0.112 0.888 28 H 0.274 0.726 29 H 0.291 0.709 30 H 0.196 0.804 31 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 19.559 -15.042 0.022 24.674 hybrid contribution 1.561 0.730 -0.029 1.724 sum 21.120 -14.312 -0.007 25.513 Atomic orbital electron populations 1.69905 1.06293 1.27069 1.50715 1.24962 0.94714 0.99228 0.94243 0.86799 0.80585 0.83408 0.78768 1.20206 1.21383 1.18568 1.21059 0.88997 0.94708 1.51753 0.90735 1.19406 0.96640 0.89604 0.97930 1.21685 0.85189 1.03967 1.04202 1.22114 0.91604 0.81554 0.74782 1.90690 1.70224 1.31026 1.49352 1.45454 0.92737 1.11401 1.77985 1.43257 0.95934 1.05526 1.78631 1.18317 0.86254 0.86907 0.94346 1.67252 1.38106 0.96358 1.20097 1.22642 0.90236 0.95816 0.94106 1.18082 0.91414 0.81051 1.11488 1.91526 1.82551 1.42144 1.94537 1.21370 1.02247 0.89500 0.98731 1.17414 0.87659 0.82647 1.13984 1.91540 1.79455 1.44790 1.94525 0.92619 0.95616 0.96063 0.88809 0.88770 0.72593 0.70886 0.80443 0.82122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 22.10 27.47 -169.99 -4.67 17.43 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.26 -6.53 6.54 56.52 0.37 -6.16 16 7 C -0.53 -14.62 9.66 -34.44 -0.33 -14.95 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 9 C 0.00 0.05 3.33 -27.89 -0.09 -0.04 16 10 C -0.11 -1.96 5.64 -27.89 -0.16 -2.12 16 11 C 0.51 8.76 7.95 -10.99 -0.09 8.68 16 12 O -0.54 -11.20 15.82 5.55 0.09 -11.11 16 13 N -0.53 -7.12 6.29 31.22 0.20 -6.93 16 14 N -0.51 -6.46 6.43 31.20 0.20 -6.26 16 15 C 0.38 4.20 7.60 -154.75 -1.18 3.02 16 16 N -0.50 -5.07 9.37 -12.29 -0.12 -5.18 16 17 C 0.13 1.02 11.16 -17.48 -0.20 0.83 16 18 C 0.00 0.04 7.34 -39.30 -0.29 -0.25 16 19 F -0.13 -1.03 17.28 2.25 0.04 -0.99 16 20 C -0.09 -0.71 10.14 -39.20 -0.40 -1.10 16 21 C 0.01 0.11 7.35 -39.10 -0.29 -0.18 16 22 F -0.12 -1.28 16.65 2.25 0.04 -1.24 16 23 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 24 H 0.03 0.64 7.16 -51.93 -0.37 0.27 16 25 H 0.02 0.52 7.53 -51.92 -0.39 0.13 16 26 H 0.09 1.53 8.14 -51.92 -0.42 1.10 16 27 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 28 H 0.43 4.93 7.96 -182.59 -1.45 3.48 16 29 H 0.45 5.81 7.47 -182.59 -1.36 4.45 16 30 H 0.18 0.86 8.06 -52.49 -0.42 0.44 16 31 H 0.16 0.87 8.06 -52.48 -0.42 0.44 16 LS Contribution 288.46 15.07 4.35 4.35 Total: -1.00 -32.72 288.46 -7.07 -39.79 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -4.86 Total: 1.01 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -3.11 Total: -4.18 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: 1.06 Total: -45.06 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.09 Total: -11.11 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.08 Total: -2.24 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.72 -7.07 -39.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001629280680.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.632 kcal (2) G-P(sol) polarization free energy of solvation -32.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds