Wall clock time and date at job start Mon Mar 30 2020 00:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00303 * 2 1 4 4 H 1.48507 * 109.46990 * 270.00193 * 3 2 1 5 5 H 1.48496 * 109.46902 * 30.00126 * 3 2 1 6 6 H 1.48499 * 109.47005 * 150.00188 * 3 2 1 7 7 C 1.37881 * 119.99861 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99925 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00308 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47621 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47621 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99708 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00394 * 180.02562 * 11 10 9 14 14 N 1.40102 * 120.00462 * 180.02562 * 13 11 10 15 15 C 1.39287 * 120.00445 * 180.02562 * 14 13 11 16 16 N 1.32326 * 119.68719 * 359.97438 * 15 14 13 17 17 C 1.32005 * 121.67039 * 180.02562 * 16 15 14 18 18 C 1.38235 * 120.85970 * 0.02562 * 17 16 15 19 19 F 1.35095 * 120.34752 * 180.02562 * 18 17 16 20 20 C 1.39011 * 119.29652 * 359.97438 * 18 17 16 21 21 C 1.38495 * 118.47026 * 0.02562 * 20 18 17 22 22 F 1.35098 * 120.46065 * 179.97438 * 21 20 18 23 23 H 0.96999 * 119.99711 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46943 * 59.99673 * 9 7 2 25 25 H 1.09007 * 109.47211 * 299.99912 * 9 7 2 26 26 H 1.09008 * 109.46955 * 60.00204 * 10 9 7 27 27 H 1.08999 * 109.47025 * 300.00538 * 10 9 7 28 28 H 0.97003 * 120.00114 * 359.97438 * 13 11 10 29 29 H 0.97003 * 119.99424 * 359.97438 * 14 13 11 30 30 H 1.08001 * 119.57054 * 180.28248 * 17 16 15 31 31 H 1.08005 * 120.76700 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1942 -0.0011 10 6 4.0215 -2.6367 -0.0010 11 6 5.5284 -2.6368 -0.0022 12 8 6.1348 -1.5865 -0.0026 13 7 6.2022 -3.8040 -0.0028 14 7 7.6033 -3.8041 -0.0034 15 6 8.2997 -5.0104 -0.0046 16 7 7.6318 -6.1527 -0.0047 17 6 8.2518 -7.3181 -0.0053 18 6 9.6325 -7.3866 -0.0054 19 9 10.2564 -8.5849 -0.0065 20 6 10.3720 -6.2096 -0.0053 21 6 9.6924 -5.0029 -0.0047 22 9 10.3709 -3.8346 -0.0041 23 1 -0.4850 0.8401 -0.0004 24 1 3.8751 -0.6806 0.8888 25 1 3.8745 -0.6802 -0.8912 26 1 3.6578 -3.1507 -0.8908 27 1 3.6584 -3.1503 0.8892 28 1 5.7172 -4.6440 -0.0021 29 1 8.0883 -2.9640 -0.0038 30 1 7.6729 -8.2298 -0.0099 31 1 11.4518 -6.2354 -0.0050 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001629280680.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:02 Heat of formation + Delta-G solvation = -77.651388 kcal Electronic energy + Delta-G solvation = -19400.555305 eV Core-core repulsion = 15739.567404 eV Total energy + Delta-G solvation = -3660.987902 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.11686 -49.90618 -41.47035 -40.62589 -37.25514 -35.55579 -33.72518 -33.35488 -32.85945 -29.77085 -27.79102 -25.24813 -24.20973 -23.30758 -21.72233 -19.77285 -19.55190 -19.18754 -18.86370 -17.91535 -17.38471 -17.06468 -16.84783 -16.71187 -16.36229 -16.22570 -15.79294 -15.23103 -15.08017 -15.06500 -14.65424 -14.38722 -14.30730 -13.45173 -13.42230 -12.99630 -12.78084 -12.16506 -11.98168 -11.77213 -11.40179 -11.21910 -10.99893 -10.97003 -10.77071 -10.49744 -8.61255 -8.30211 -6.33164 -0.28576 -0.15907 0.68434 1.34654 1.37187 1.49638 1.51070 2.34076 2.35866 2.48779 2.76925 2.93779 3.05850 3.41613 3.56517 3.77889 4.05971 4.29447 4.37039 4.47211 4.50950 4.70894 4.94423 5.22401 5.34433 5.43698 5.53062 5.61864 5.91788 6.23403 6.34098 6.66450 6.74352 7.20425 7.32180 8.85326 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.043472 B = 0.003233 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.938732 B = 8659.038168 C = 9282.529771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.014 3.986 3 Si 0.937 3.063 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.260 1.260 7 C -0.528 4.528 8 H 0.054 0.946 9 C 0.004 3.996 10 C -0.103 4.103 11 C 0.517 3.483 12 O -0.581 6.581 13 N -0.507 5.507 14 N -0.520 5.520 15 C 0.366 3.634 16 N -0.511 5.511 17 C 0.134 3.866 18 C 0.014 3.986 19 F -0.126 7.126 20 C -0.082 4.082 21 C 0.004 3.996 22 F -0.131 7.131 23 H 0.267 0.733 24 H 0.013 0.987 25 H 0.012 0.988 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.443 0.557 29 H 0.442 0.558 30 H 0.209 0.791 31 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.220 -17.602 -0.016 28.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.184 4.184 3 Si 0.762 3.238 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.184 1.184 7 C -0.566 4.566 8 H 0.072 0.928 9 C -0.034 4.034 10 C -0.144 4.144 11 C 0.305 3.695 12 O -0.459 6.459 13 N -0.255 5.255 14 N -0.248 5.248 15 C 0.128 3.872 16 N -0.229 5.229 17 C -0.025 4.025 18 C -0.010 4.010 19 F -0.105 7.105 20 C -0.109 4.109 21 C -0.024 4.024 22 F -0.110 7.110 23 H 0.076 0.924 24 H 0.032 0.968 25 H 0.030 0.970 26 H 0.131 0.869 27 H 0.131 0.869 28 H 0.287 0.713 29 H 0.287 0.713 30 H 0.225 0.775 31 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 21.426 -16.685 -0.013 27.156 hybrid contribution 1.068 0.962 -0.018 1.438 sum 22.494 -15.722 -0.031 27.444 Atomic orbital electron populations 1.70020 1.07806 1.28075 1.52521 1.25788 0.95458 1.02819 0.94354 0.85844 0.79286 0.79588 0.79074 1.19464 1.20626 1.18392 1.21406 0.91105 0.93831 1.50232 0.92790 1.19251 0.94025 0.93327 0.96770 1.21461 0.86242 1.00537 1.06140 1.21651 0.91200 0.81808 0.74820 1.90674 1.70814 1.32601 1.51770 1.44972 0.93785 1.10719 1.76042 1.43276 0.94900 1.06220 1.80406 1.18456 0.86696 0.86650 0.95375 1.67274 1.38611 0.96702 1.20279 1.23137 0.90668 0.95985 0.92713 1.18131 0.91500 0.81059 1.10358 1.91545 1.82520 1.42022 1.94403 1.21620 1.03530 0.88604 0.97139 1.17500 0.87214 0.83080 1.14594 1.91526 1.79467 1.45297 1.94672 0.92405 0.96842 0.96965 0.86908 0.86917 0.71265 0.71322 0.77484 0.79674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.29 13.96 21.45 0.30 -57.99 16 2 C 0.01 0.79 5.47 84.66 0.46 1.25 16 3 Si 0.94 45.86 27.47 68.60 1.88 47.75 16 4 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 5 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 6 H -0.26 -12.54 6.54 99.48 0.65 -11.89 16 7 C -0.53 -29.48 9.66 25.60 0.25 -29.23 16 8 H 0.05 3.16 7.99 -2.91 -0.02 3.14 16 9 C 0.00 0.21 3.33 29.85 0.10 0.31 16 10 C -0.10 -3.59 5.64 29.85 0.17 -3.42 16 11 C 0.52 17.31 7.95 87.66 0.70 18.01 16 12 O -0.58 -24.08 15.82 -3.04 -0.05 -24.13 16 13 N -0.51 -13.10 6.29 -173.54 -1.09 -14.19 16 14 N -0.52 -12.80 6.43 -55.20 -0.35 -13.16 16 15 C 0.37 7.51 7.60 133.02 1.01 8.52 16 16 N -0.51 -9.22 9.37 -192.79 -1.81 -11.03 16 17 C 0.13 1.68 11.16 84.67 0.94 2.62 16 18 C 0.01 0.18 7.34 22.45 0.16 0.34 16 19 F -0.13 -1.61 17.28 44.97 0.78 -0.83 16 20 C -0.08 -1.04 10.14 22.52 0.23 -0.81 16 21 C 0.00 0.07 7.35 22.58 0.17 0.24 16 22 F -0.13 -2.56 16.65 44.97 0.75 -1.81 16 23 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 24 H 0.01 0.66 7.16 -2.39 -0.02 0.64 16 25 H 0.01 0.59 7.53 -2.38 -0.02 0.57 16 26 H 0.11 3.50 8.14 -2.38 -0.02 3.48 16 27 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 28 H 0.44 9.32 7.96 -213.32 -1.70 7.62 16 29 H 0.44 11.48 7.47 -213.32 -1.59 9.89 16 30 H 0.21 1.23 8.06 -2.91 -0.02 1.21 16 31 H 0.19 1.38 8.06 -2.91 -0.02 1.36 16 Total: -1.00 -70.52 288.46 2.46 -68.06 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -2.14 Total: 9.50 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: 4.19 Total: -2.18 kcal Atomic # 7 Polarization: -93.41 SS G_CDS: -2.95 Total: -96.36 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.05 Total: -24.13 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 1.53 Total: -2.65 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.88 Total: 47.75 kcal Total: -70.52 2.46 -68.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001629280680.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.587 kcal (2) G-P(sol) polarization free energy of solvation -70.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds