Wall clock time and date at job start Mon Mar 30 2020 01:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35457 * 126.43690 * 2 1 4 4 Cl 1.73602 * 127.23383 * 359.96631 * 3 2 1 5 5 C 1.41543 * 105.52504 * 180.02562 * 3 2 1 6 6 C 1.47666 * 126.45983 * 180.02562 * 5 3 2 7 7 O 1.21573 * 120.00086 * 354.31498 * 6 5 3 8 8 N 1.34777 * 119.99785 * 174.04224 * 6 5 3 9 9 C 1.46496 * 120.00154 * 354.75651 * 8 6 5 10 10 C 1.46500 * 119.99781 * 174.76011 * 8 6 5 11 11 C 1.50695 * 109.47402 * 90.00111 * 10 8 6 12 12 H 1.08005 * 119.99804 * 359.97438 * 11 10 8 13 13 C 1.37877 * 120.00526 * 179.97438 * 11 10 8 14 14 N 1.31513 * 119.99589 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00392 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47200 * 89.99682 * 15 13 11 17 17 H 1.48493 * 109.47250 * 210.00051 * 15 13 11 18 18 H 1.48502 * 109.47118 * 330.00050 * 15 13 11 19 19 N 1.31826 * 107.07782 * 0.26003 * 5 3 2 20 20 N 1.28476 * 110.13469 * 359.55885 * 19 5 3 21 21 C 1.46496 * 124.93322 * 180.21650 * 20 19 5 22 22 H 1.09001 * 109.47732 * 89.97532 * 1 2 3 23 23 H 1.09005 * 109.47501 * 209.97608 * 1 2 3 24 24 H 1.09006 * 109.47283 * 329.97457 * 1 2 3 25 25 H 1.09000 * 109.47353 * 85.30439 * 9 8 6 26 26 H 1.08996 * 109.47698 * 205.30331 * 9 8 6 27 27 H 1.09006 * 109.47419 * 325.30411 * 9 8 6 28 28 H 1.09007 * 109.46981 * 209.99579 * 10 8 6 29 29 H 1.08990 * 109.47531 * 329.99460 * 10 8 6 30 30 H 0.97002 * 120.00017 * 180.02562 * 14 13 11 31 31 H 1.09001 * 109.47031 * 270.27281 * 21 20 19 32 32 H 1.08999 * 109.47064 * 30.27932 * 21 20 19 33 33 H 1.09000 * 109.46744 * 150.27537 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3115 1.0898 0.0000 4 17 1.8234 2.7558 -0.0008 5 6 3.6337 0.5846 -0.0006 6 6 4.8774 1.3808 -0.0003 7 8 4.8244 2.5909 -0.1038 8 7 6.0708 0.7663 0.1202 9 6 6.1303 -0.6767 0.3659 10 6 7.3087 1.5414 0.0055 11 6 7.7141 2.0449 1.3668 12 1 7.1099 1.8112 2.2309 13 6 8.8563 2.8038 1.5092 14 7 9.5923 3.0880 0.4569 15 14 9.3585 3.4285 3.1964 16 1 10.2395 2.4290 3.8523 17 1 10.0892 4.7130 3.0514 18 1 8.1458 3.6399 4.0271 19 7 3.5456 -0.7307 -0.0066 20 7 2.3125 -1.0914 -0.0005 21 6 1.8445 -2.4796 0.0000 22 1 -0.3634 0.0004 -1.0276 23 1 -0.3634 -0.8902 0.5135 24 1 -0.3634 0.8898 0.5142 25 1 6.0747 -1.2095 -0.5834 26 1 7.0673 -0.9219 0.8658 27 1 5.2930 -0.9725 0.9982 28 1 8.0985 0.9073 -0.3974 29 1 7.1468 2.3880 -0.6616 30 1 10.3962 3.6216 0.5571 31 1 1.7275 -2.8240 -1.0275 32 1 2.5721 -3.1081 0.5134 33 1 0.8855 -2.5394 0.5147 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001631255080.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:36 Heat of formation + Delta-G solvation = 23.461051 kcal Electronic energy + Delta-G solvation = -18684.681760 eV Core-core repulsion = 15579.875102 eV Total energy + Delta-G solvation = -3104.806657 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.78286 -40.32837 -37.52073 -36.60958 -34.94662 -34.30168 -33.45304 -30.13932 -28.48446 -27.82713 -27.29603 -25.31370 -23.20629 -21.83620 -19.99332 -18.69827 -18.08921 -17.60207 -17.42464 -17.00801 -16.20983 -15.87712 -15.72898 -14.76195 -14.40119 -14.31843 -14.13400 -13.79006 -13.66136 -13.60988 -13.40882 -13.24770 -12.97714 -12.90400 -12.76108 -12.56223 -12.27757 -12.05863 -11.73343 -11.59756 -10.83678 -10.63330 -10.14497 -9.75477 -9.42028 -8.21744 -6.36452 0.45955 0.81569 0.99051 1.36363 1.40078 1.50793 1.73665 2.23894 2.40805 2.43926 3.07379 3.32356 3.57225 3.80160 4.12050 4.37337 4.42365 4.46212 4.67230 4.70756 4.72186 4.77970 4.88781 4.94633 5.01791 5.12823 5.20622 5.55736 5.74218 5.83664 6.05322 6.59278 6.71344 6.76226 7.24712 7.40145 8.85607 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.025724 B = 0.005270 C = 0.004736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.195585 B = 5311.747082 C = 5910.639457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.044 3.956 3 C -0.139 4.139 4 Cl -0.025 7.025 5 C -0.023 4.023 6 C 0.573 3.427 7 O -0.566 6.566 8 N -0.597 5.597 9 C 0.096 3.904 10 C 0.262 3.738 11 C -0.543 4.543 12 H 0.049 0.951 13 C 0.010 3.990 14 N -0.927 5.927 15 Si 0.969 3.031 16 H -0.261 1.261 17 H -0.278 1.278 18 H -0.276 1.276 19 N -0.247 5.247 20 N -0.272 5.272 21 C 0.073 3.927 22 H 0.101 0.899 23 H 0.112 0.888 24 H 0.086 0.914 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.029 0.971 29 H 0.002 0.998 30 H 0.268 0.732 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.260 -15.149 -0.396 26.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.082 4.082 3 C -0.176 4.176 4 Cl 0.003 6.997 5 C -0.182 4.182 6 C 0.360 3.640 7 O -0.444 6.444 8 N -0.328 5.328 9 C -0.047 4.047 10 C 0.141 3.859 11 C -0.581 4.581 12 H 0.067 0.933 13 C -0.189 4.189 14 N -0.567 5.567 15 Si 0.793 3.207 16 H -0.186 1.186 17 H -0.203 1.203 18 H -0.201 1.201 19 N -0.084 5.084 20 N -0.061 5.061 21 C -0.065 4.065 22 H 0.119 0.881 23 H 0.130 0.870 24 H 0.105 0.895 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.102 0.898 28 H 0.047 0.953 29 H 0.020 0.980 30 H 0.077 0.923 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -20.519 -15.425 -0.521 25.675 hybrid contribution 0.430 1.613 0.535 1.753 sum -20.088 -13.812 0.014 24.379 Atomic orbital electron populations 1.20625 0.82143 1.05913 1.05304 1.21667 0.97100 0.84479 1.04988 1.20792 0.92206 0.88129 1.16507 1.98324 1.90615 1.13443 1.97322 1.21673 0.93816 0.90515 1.12192 1.17423 0.82599 0.86349 0.77667 1.90748 1.86752 1.14735 1.52180 1.48033 1.05898 1.10421 1.68491 1.21883 1.02905 0.78307 1.01595 1.18847 0.80335 0.90414 0.96259 1.21635 1.08713 1.33701 0.94057 0.93317 1.25840 0.96062 0.95673 1.01331 1.70047 1.16181 1.39261 1.31187 0.85393 0.78162 0.78182 0.78930 1.18585 1.20273 1.20111 1.73821 1.02937 1.12267 1.19411 1.46047 1.01800 1.09203 1.49043 1.22789 1.03521 0.73421 1.06719 0.88069 0.86990 0.89540 0.91754 0.91341 0.89844 0.95261 0.98005 0.92281 0.87401 0.87383 0.84915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 9.99 71.24 0.71 -0.16 16 2 C 0.04 0.98 6.94 41.33 0.29 1.26 16 3 C -0.14 -4.64 6.79 22.44 0.15 -4.49 16 4 Cl -0.03 -0.88 27.94 -2.72 -0.08 -0.95 16 5 C -0.02 -0.90 6.75 42.45 0.29 -0.62 16 6 C 0.57 28.60 7.66 86.73 0.66 29.26 16 7 O -0.57 -32.74 15.53 -3.94 -0.06 -32.80 16 8 N -0.60 -29.41 2.86 -854.80 -2.44 -31.85 16 9 C 0.10 3.58 9.33 127.77 1.19 4.78 16 10 C 0.26 15.24 5.10 85.63 0.44 15.68 16 11 C -0.54 -33.23 9.39 25.60 0.24 -32.99 16 12 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 13 C 0.01 0.60 5.46 84.65 0.46 1.06 16 14 N -0.93 -57.79 13.29 21.45 0.28 -57.51 16 15 Si 0.97 46.77 29.54 68.60 2.03 48.80 16 16 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 17 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 18 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 19 N -0.25 -7.58 8.73 -48.17 -0.42 -8.00 16 20 N -0.27 -5.67 3.72 -355.40 -1.32 -6.99 16 21 C 0.07 0.51 11.12 127.77 1.42 1.93 16 22 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.11 0.36 7.03 -2.38 -0.02 0.34 16 24 H 0.09 1.03 8.03 -2.38 -0.02 1.01 16 25 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.07 2.54 8.04 -2.39 -0.02 2.52 16 27 H 0.08 2.87 5.89 -2.38 -0.01 2.85 16 28 H 0.03 1.70 8.07 -2.38 -0.02 1.68 16 29 H 0.00 0.12 7.50 -2.39 -0.02 0.10 16 30 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 31 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.13 -0.02 6.98 -2.39 -0.02 -0.04 16 Total: -1.00 -84.31 301.67 4.97 -79.34 By element: Atomic # 1 Polarization: -6.89 SS G_CDS: 1.13 Total: -5.76 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: 5.85 Total: 15.72 kcal Atomic # 7 Polarization: -100.45 SS G_CDS: -3.90 Total: -104.35 kcal Atomic # 8 Polarization: -32.74 SS G_CDS: -0.06 Total: -32.80 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.08 Total: -0.95 kcal Total: -84.31 4.97 -79.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001631255080.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.802 kcal (2) G-P(sol) polarization free energy of solvation -84.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds