Wall clock time and date at job start Mon Mar 30 2020 01:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 115.54993 * 2 1 4 4 O 1.21301 * 119.99775 * 214.32443 * 3 2 1 5 5 N 1.34771 * 119.99910 * 34.33232 * 3 2 1 6 6 C 1.40598 * 119.99970 * 180.02562 * 5 3 2 7 7 C 1.40655 * 126.07978 * 0.02562 * 6 5 3 8 8 N 1.30910 * 108.38585 * 179.97438 * 7 6 5 9 9 N 1.40066 * 108.40690 * 0.02562 * 8 7 6 10 10 C 1.37323 * 126.07157 * 180.02562 * 9 8 7 11 11 H 1.08001 * 120.00218 * 179.97438 * 10 9 8 12 12 C 1.38988 * 119.99632 * 359.97438 * 10 9 8 13 13 N 1.31294 * 120.00185 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00026 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46939 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.47279 * 119.99483 * 14 12 10 17 17 H 1.48500 * 109.46953 * 239.99549 * 14 12 10 18 18 C 1.35674 * 126.08468 * 179.97438 * 6 5 3 19 19 C 1.53003 * 117.49719 * 214.32831 * 2 1 3 20 20 C 1.53003 * 117.51487 * 145.70089 * 2 1 3 21 21 F 1.39899 * 117.49591 * 214.96836 * 20 2 1 22 22 F 1.39899 * 117.50069 * 359.97438 * 20 2 1 23 23 H 1.09003 * 109.47203 * 85.58568 * 1 2 3 24 24 H 1.08997 * 109.47394 * 205.58239 * 1 2 3 25 25 H 1.08994 * 109.47435 * 325.58404 * 1 2 3 26 26 H 0.96997 * 120.00506 * 359.97438 * 5 3 2 27 27 H 1.07999 * 125.80249 * 359.69505 * 7 6 5 28 28 H 0.97002 * 120.00110 * 180.02562 * 13 12 10 29 29 H 1.08004 * 126.24732 * 359.97438 * 18 6 5 30 30 H 1.08997 * 117.50061 * 359.97438 * 19 2 1 31 31 H 1.08999 * 117.49632 * 145.00006 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 8 3.2243 1.5326 -0.5924 5 7 1.6010 2.3832 0.6583 6 6 2.2071 3.6519 0.6578 7 6 3.4108 3.9946 0.0158 8 7 3.6518 5.2617 0.2396 9 7 2.6165 5.7760 1.0304 10 6 2.5070 7.0696 1.4779 11 1 1.6627 7.3615 2.0849 12 6 3.4828 8.0033 1.1497 13 7 4.5095 7.6484 0.4123 14 14 3.3344 9.7629 1.7590 15 1 2.0954 9.9047 2.5654 16 1 4.5129 10.0972 2.5986 17 1 3.2766 10.6859 0.5971 18 6 1.7346 4.7635 1.2758 19 6 2.2364 -1.1208 -0.7654 20 6 2.2368 -1.1210 0.7647 21 9 3.4371 -0.8053 1.4103 22 9 1.4347 -2.0676 1.4110 23 1 -0.3634 0.0791 -1.0246 24 1 -0.3634 -0.9269 0.4437 25 1 -0.3634 0.8477 0.5808 26 1 0.7658 2.2450 1.1317 27 1 4.0327 3.3251 -0.5597 28 1 5.1907 8.3000 0.1835 29 1 0.8263 4.8343 1.8558 30 1 1.6112 -1.8584 -1.2685 31 1 3.1713 -0.8747 -1.2689 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001631318624.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:04 Heat of formation + Delta-G solvation = -15.233603 kcal Electronic energy + Delta-G solvation = -20342.424583 eV Core-core repulsion = 16684.143320 eV Total energy + Delta-G solvation = -3658.281263 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.78727 -47.43645 -40.13250 -38.99373 -36.17754 -34.35702 -33.20439 -30.29189 -29.05660 -27.67782 -25.12569 -23.37944 -22.66915 -20.97136 -19.83893 -19.31802 -18.10173 -17.43432 -17.13645 -16.14862 -15.66986 -15.43262 -15.30545 -14.39625 -14.19437 -14.06774 -13.76155 -13.63633 -13.42732 -13.31289 -13.07334 -12.93998 -12.61002 -12.24877 -11.70324 -11.47035 -11.29462 -10.97270 -10.90395 -10.51937 -10.26691 -10.10689 -9.30952 -9.20488 -8.84160 -8.08874 -6.75055 -6.57822 -4.25331 2.23286 2.88213 2.93967 3.03957 3.10318 3.29757 3.31181 3.69454 3.82823 3.97544 4.29036 4.37966 4.50318 4.61908 4.96060 5.00349 5.19436 5.33949 5.38023 5.42742 5.68784 5.82928 6.21145 6.41149 6.84722 6.92197 7.04661 7.20164 7.83028 8.08922 8.23194 8.56466 8.76062 9.34886 9.63809 10.38196 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.047153 B = 0.003945 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.671167 B = 7095.665654 C = 7262.779861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.157 4.157 3 C 0.532 3.468 4 O -0.522 6.522 5 N -0.612 5.612 6 C -0.063 4.063 7 C -0.030 4.030 8 N -0.260 5.260 9 N -0.141 5.141 10 C -0.323 4.323 11 H 0.117 0.883 12 C 0.046 3.954 13 N -0.769 5.769 14 Si 0.935 3.065 15 H -0.263 1.263 16 H -0.273 1.273 17 H -0.274 1.274 18 C -0.082 4.082 19 C -0.140 4.140 20 C 0.217 3.783 21 F -0.149 7.149 22 F -0.157 7.157 23 H 0.080 0.920 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.398 0.602 27 H 0.176 0.824 28 H 0.275 0.725 29 H 0.146 0.854 30 H 0.129 0.871 31 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.702 -13.069 0.101 15.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.162 4.162 3 C 0.316 3.684 4 O -0.399 6.399 5 N -0.254 5.254 6 C -0.169 4.169 7 C -0.206 4.206 8 N -0.091 5.091 9 N 0.092 4.908 10 C -0.455 4.455 11 H 0.135 0.865 12 C -0.171 4.171 13 N -0.395 5.395 14 Si 0.759 3.241 15 H -0.187 1.187 16 H -0.199 1.199 17 H -0.199 1.199 18 C -0.233 4.233 19 C -0.178 4.178 20 C 0.180 3.820 21 F -0.129 7.129 22 F -0.138 7.138 23 H 0.099 0.901 24 H 0.095 0.905 25 H 0.091 0.909 26 H 0.232 0.768 27 H 0.193 0.807 28 H 0.085 0.915 29 H 0.164 0.836 30 H 0.147 0.853 31 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.923 -11.872 -0.581 13.755 hybrid contribution -1.106 -0.123 0.985 1.486 sum -8.029 -11.994 0.404 14.439 Atomic orbital electron populations 1.21417 0.88779 1.03751 1.03918 1.23007 0.98012 0.91518 1.03627 1.18745 0.85081 0.83716 0.80834 1.90619 1.22559 1.82742 1.43949 1.42364 1.24950 1.07774 1.50276 1.17254 1.00356 0.84497 1.14778 1.24105 0.96980 0.94547 1.04943 1.78266 1.09270 1.07838 1.13730 1.44570 1.11944 1.06429 1.27899 1.19941 1.10526 0.81816 1.33244 0.86507 1.25651 0.94782 1.00977 0.95686 1.70226 1.07494 1.34837 1.26977 0.85757 0.79102 0.80350 0.78895 1.18672 1.19879 1.19887 1.21246 1.00634 0.88837 1.12574 1.24381 1.04781 0.98035 0.90558 1.19916 0.80630 0.92116 0.89354 1.93095 1.44010 1.92502 1.83343 1.93008 1.72323 1.64771 1.83670 0.90083 0.90513 0.90906 0.76804 0.80727 0.91461 0.83614 0.85295 0.84567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 9.76 37.16 0.36 -0.71 16 2 C -0.16 -1.96 2.61 -155.66 -0.41 -2.36 16 3 C 0.53 9.35 6.99 -10.99 -0.08 9.28 16 4 O -0.52 -11.12 13.41 5.54 0.07 -11.05 16 5 N -0.61 -10.96 5.36 -10.00 -0.05 -11.01 16 6 C -0.06 -1.47 6.90 -83.84 -0.58 -2.05 16 7 C -0.03 -0.80 10.85 -17.03 -0.18 -0.99 16 8 N -0.26 -7.59 10.40 30.80 0.32 -7.27 16 9 N -0.14 -3.87 3.74 -11.41 -0.04 -3.92 16 10 C -0.32 -8.52 10.25 -14.81 -0.15 -8.68 16 11 H 0.12 2.75 7.83 -52.49 -0.41 2.34 16 12 C 0.05 1.19 5.50 -17.50 -0.10 1.10 16 13 N -0.77 -21.48 11.81 55.49 0.66 -20.83 16 14 Si 0.94 18.84 29.55 -169.99 -5.02 13.82 16 15 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 16 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 17 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 18 C -0.08 -1.92 11.49 -16.39 -0.19 -2.11 16 19 C -0.14 -1.47 9.73 -26.73 -0.26 -1.73 16 20 C 0.22 2.78 5.14 -26.73 -0.14 2.64 16 21 F -0.15 -2.39 17.13 2.25 0.04 -2.35 16 22 F -0.16 -1.86 16.50 2.25 0.04 -1.82 16 23 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.08 0.58 7.10 -51.93 -0.37 0.21 16 25 H 0.07 0.60 6.38 -51.93 -0.33 0.27 16 26 H 0.40 5.53 7.12 -40.82 -0.29 5.24 16 27 H 0.18 4.58 5.92 -52.49 -0.31 4.27 16 28 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.15 2.83 8.06 -52.48 -0.42 2.41 16 30 H 0.13 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.14 1.57 7.67 -51.93 -0.40 1.17 16 LS Contribution 283.13 15.07 4.27 4.27 Total: -1.00 -33.34 283.13 -3.96 -37.30 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -2.51 Total: 8.48 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -1.72 Total: -5.61 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: 0.88 Total: -43.03 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.07 Total: -11.05 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.08 Total: -4.18 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.02 Total: 13.82 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -33.34 -3.96 -37.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001631318624.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.067 kcal (2) G-P(sol) polarization free energy of solvation -33.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds