Wall clock time and date at job start Mon Mar 30 2020 01:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 115.55929 * 2 1 4 4 O 1.21304 * 120.00083 * 145.68326 * 3 2 1 5 5 N 1.34779 * 120.00112 * 325.68576 * 3 2 1 6 6 C 1.40590 * 120.00076 * 180.02562 * 5 3 2 7 7 C 1.40646 * 126.08044 * 0.02562 * 6 5 3 8 8 N 1.30913 * 108.38421 * 180.02562 * 7 6 5 9 9 N 1.40073 * 108.40761 * 0.02562 * 8 7 6 10 10 C 1.37322 * 126.06870 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99594 * 179.97438 * 10 9 8 12 12 C 1.38988 * 119.99999 * 359.96671 * 10 9 8 13 13 N 1.31292 * 120.00059 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99733 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47225 * 90.00216 * 14 12 10 16 16 H 1.48510 * 109.46661 * 209.99983 * 14 12 10 17 17 H 1.48500 * 109.47212 * 329.99750 * 14 12 10 18 18 C 1.35683 * 126.07976 * 179.71551 * 6 5 3 19 19 C 1.53002 * 117.49968 * 145.68251 * 2 1 3 20 20 C 1.53000 * 60.02940 * 107.50530 * 19 2 1 21 21 F 1.39901 * 117.49487 * 107.47899 * 20 19 2 22 22 F 1.39901 * 117.50046 * 252.49778 * 20 19 2 23 23 H 1.08997 * 109.47537 * 274.31139 * 1 2 3 24 24 H 1.09001 * 109.46849 * 34.31899 * 1 2 3 25 25 H 1.09005 * 109.46784 * 154.31358 * 1 2 3 26 26 H 0.97005 * 119.99246 * 359.97438 * 5 3 2 27 27 H 1.07990 * 125.81150 * 0.02562 * 7 6 5 28 28 H 0.97007 * 120.00045 * 180.02562 * 13 12 10 29 29 H 1.08003 * 126.24471 * 359.97438 * 18 6 5 30 30 H 1.09002 * 117.49918 * 0.02562 * 19 2 1 31 31 H 1.09002 * 117.49754 * 215.00713 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1802 1.3596 0.0000 4 8 3.2246 1.5324 0.5922 5 7 1.6012 2.3835 -0.6580 6 6 2.2081 3.6517 -0.6584 7 6 3.4130 3.9936 -0.0185 8 7 3.6544 5.2606 -0.2426 9 7 2.6173 5.7759 -1.0306 10 6 2.5082 7.0695 -1.4782 11 1 1.6629 7.3619 -2.0835 12 6 3.4855 8.0024 -1.1522 13 7 4.5133 7.6468 -0.4167 14 14 3.3366 9.7623 -1.7606 15 1 2.5866 10.5687 -0.7644 16 1 4.6928 10.3389 -1.9442 17 1 2.6123 9.7784 -3.0569 18 6 1.7386 4.7620 -1.2812 19 6 2.2365 -1.1209 0.7651 20 6 2.2372 -1.1215 -0.7649 21 9 3.4376 -0.8059 -1.4103 22 9 1.4353 -2.0687 -1.4108 23 1 -0.3634 0.0773 1.0247 24 1 -0.3633 0.8488 -0.5794 25 1 -0.3633 -0.9262 -0.4455 26 1 0.7662 2.2451 -1.1319 27 1 4.0335 3.3248 0.5593 28 1 5.1952 8.2980 -0.1889 29 1 0.8329 4.8316 -1.8655 30 1 1.6112 -1.8586 1.2682 31 1 3.1713 -0.8749 1.2688 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001631318628.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:06 Heat of formation + Delta-G solvation = -38.167461 kcal Electronic energy + Delta-G solvation = -20342.902278 eV Core-core repulsion = 16683.626528 eV Total energy + Delta-G solvation = -3659.275750 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.81355 -48.49141 -41.82469 -40.61151 -37.31327 -36.03571 -35.03163 -32.27722 -30.23965 -29.15128 -26.96803 -24.74159 -23.63534 -22.86274 -21.48575 -20.85413 -19.39849 -19.03394 -18.30990 -17.45221 -17.17498 -16.95476 -16.80206 -15.96730 -15.71195 -15.15746 -15.13993 -14.97562 -14.85722 -14.72917 -14.36206 -14.01502 -13.51643 -13.36893 -13.30822 -13.19516 -12.91680 -12.84964 -12.08827 -11.91181 -11.81276 -11.17473 -11.04077 -10.86152 -10.71380 -10.12793 -8.58608 -8.48124 -6.26202 0.93882 1.34306 1.40078 1.58156 1.76614 1.86784 1.99254 2.14081 2.19301 2.56247 2.83427 3.04982 3.08242 3.39730 3.48304 3.69623 4.26951 4.41378 4.54065 4.56876 4.73444 4.76382 4.84134 4.98418 5.03919 5.18477 5.26481 5.38630 5.93663 6.26787 6.61404 6.71158 7.24581 7.43874 7.64703 8.51320 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.047150 B = 0.003945 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.702973 B = 7095.861557 C = 7263.074997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.155 4.155 3 C 0.527 3.473 4 O -0.564 6.564 5 N -0.606 5.606 6 C -0.050 4.050 7 C -0.058 4.058 8 N -0.310 5.310 9 N -0.166 5.166 10 C -0.354 4.354 11 H 0.143 0.857 12 C -0.006 4.006 13 N -0.825 5.825 14 Si 1.020 2.980 15 H -0.263 1.263 16 H -0.278 1.278 17 H -0.244 1.244 18 C -0.078 4.078 19 C -0.118 4.118 20 C 0.204 3.796 21 F -0.176 7.176 22 F -0.149 7.149 23 H 0.097 0.903 24 H 0.078 0.922 25 H 0.096 0.904 26 H 0.419 0.581 27 H 0.167 0.833 28 H 0.277 0.723 29 H 0.190 0.810 30 H 0.175 0.825 31 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.486 -13.772 -0.835 17.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.160 4.160 3 C 0.314 3.686 4 O -0.443 6.443 5 N -0.250 5.250 6 C -0.156 4.156 7 C -0.233 4.233 8 N -0.142 5.142 9 N 0.065 4.935 10 C -0.485 4.485 11 H 0.160 0.840 12 C -0.218 4.218 13 N -0.452 5.452 14 Si 0.839 3.161 15 H -0.188 1.188 16 H -0.203 1.203 17 H -0.167 1.167 18 C -0.228 4.228 19 C -0.155 4.155 20 C 0.166 3.834 21 F -0.156 7.156 22 F -0.129 7.129 23 H 0.116 0.884 24 H 0.096 0.904 25 H 0.115 0.885 26 H 0.258 0.742 27 H 0.184 0.816 28 H 0.086 0.914 29 H 0.207 0.793 30 H 0.192 0.808 31 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.757 -12.627 -0.170 15.958 hybrid contribution -0.278 -0.074 -0.744 0.797 sum -10.035 -12.701 -0.913 16.213 Atomic orbital electron populations 1.21538 0.85439 1.05109 1.05433 1.22999 1.00085 0.88258 1.04631 1.19693 0.84443 0.85325 0.79163 1.90607 1.24525 1.83819 1.45323 1.42333 1.25736 1.06104 1.50860 1.17331 0.99005 0.86635 1.12612 1.24147 0.98655 0.94260 1.06204 1.78163 1.11168 1.09133 1.15784 1.44860 1.12475 1.07510 1.28607 1.20662 1.11705 0.81991 1.34187 0.83998 1.26896 0.93770 1.05930 0.95165 1.70400 1.08836 1.36801 1.29204 0.84580 0.78387 0.73550 0.79603 1.18778 1.20276 1.16682 1.22000 1.01361 0.87826 1.11655 1.24590 1.04623 0.97407 0.88902 1.20183 0.79973 0.92646 0.90569 1.93042 1.45741 1.92815 1.84027 1.93024 1.71924 1.64227 1.83735 0.88381 0.90363 0.88480 0.74214 0.81614 0.91355 0.79284 0.80792 0.85871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.61 9.76 71.98 0.70 -0.91 16 2 C -0.16 -3.49 2.62 -52.90 -0.14 -3.63 16 3 C 0.53 18.15 7.00 87.66 0.61 18.76 16 4 O -0.56 -24.54 13.41 -3.10 -0.04 -24.58 16 5 N -0.61 -20.94 5.36 -303.92 -1.63 -22.57 16 6 C -0.05 -2.30 6.90 37.73 0.26 -2.04 16 7 C -0.06 -3.18 10.85 85.42 0.93 -2.25 16 8 N -0.31 -18.91 10.40 -56.47 -0.59 -19.50 16 9 N -0.17 -9.24 3.74 -190.01 -0.71 -9.95 16 10 C -0.35 -18.73 10.25 84.01 0.86 -17.86 16 11 H 0.14 6.45 7.83 -2.91 -0.02 6.42 16 12 C -0.01 -0.31 5.50 84.95 0.47 0.16 16 13 N -0.82 -47.80 11.81 21.66 0.26 -47.54 16 14 Si 1.02 38.41 29.55 68.60 2.03 40.44 16 15 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 16 H -0.28 -10.41 7.11 99.48 0.71 -9.70 16 17 H -0.24 -8.30 7.11 99.48 0.71 -7.59 16 18 C -0.08 -3.60 11.49 83.38 0.96 -2.64 16 19 C -0.12 -2.17 9.73 30.60 0.30 -1.87 16 20 C 0.20 4.81 5.14 30.62 0.16 4.97 16 21 F -0.18 -5.61 17.13 44.97 0.77 -4.84 16 22 F -0.15 -3.09 16.50 44.97 0.74 -2.35 16 23 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.08 0.98 6.38 -2.39 -0.02 0.97 16 25 H 0.10 0.99 7.10 -2.38 -0.02 0.97 16 26 H 0.42 10.57 7.12 -92.70 -0.66 9.91 16 27 H 0.17 9.25 5.92 -2.92 -0.02 9.24 16 28 H 0.28 14.74 8.31 -92.70 -0.77 13.97 16 29 H 0.19 6.78 8.06 -2.91 -0.02 6.76 16 30 H 0.17 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.12 2.69 7.67 -2.39 -0.02 2.67 16 Total: -1.00 -77.24 283.14 6.47 -70.77 By element: Atomic # 1 Polarization: 26.91 SS G_CDS: 0.54 Total: 27.45 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: 5.11 Total: -7.32 kcal Atomic # 7 Polarization: -96.89 SS G_CDS: -2.67 Total: -99.56 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.04 Total: -24.58 kcal Atomic # 9 Polarization: -8.71 SS G_CDS: 1.51 Total: -7.20 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 2.03 Total: 40.44 kcal Total: -77.24 6.47 -70.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001631318628.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.603 kcal (2) G-P(sol) polarization free energy of solvation -77.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds