Wall clock time and date at job start Mon Mar 30 2020 01:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 120.00332 * 2 1 4 4 H 1.48500 * 109.47109 * 239.99911 * 3 2 1 5 5 H 1.48506 * 109.46776 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46941 * 119.99832 * 3 2 1 7 7 C 1.37878 * 119.99538 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00195 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00442 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47601 * 180.02562 * 9 7 2 11 11 C 1.34778 * 120.00156 * 180.02562 * 10 9 7 12 12 O 1.21597 * 120.00076 * 359.97438 * 11 10 9 13 13 C 1.47466 * 119.99913 * 180.02562 * 11 10 9 14 14 C 1.38722 * 120.36889 * 354.01051 * 13 11 10 15 15 C 1.38905 * 120.65230 * 179.72552 * 14 13 11 16 16 C 1.36280 * 121.17325 * 0.58052 * 15 14 13 17 17 C 1.40588 * 120.12867 * 359.70252 * 16 15 14 18 18 C 1.40507 * 121.12005 * 180.02562 * 17 16 15 19 19 C 1.36606 * 119.62108 * 179.97438 * 18 17 16 20 20 O 1.35894 * 119.58390 * 180.02562 * 19 18 17 21 21 C 1.39780 * 120.82894 * 359.97438 * 19 18 17 22 22 C 1.36143 * 120.87517 * 0.02842 * 21 19 18 23 23 C 1.40192 * 119.76534 * 359.97438 * 22 21 19 24 24 H 0.96999 * 119.99571 * 0.02562 * 1 2 3 25 25 H 1.09009 * 109.46727 * 59.99817 * 9 7 2 26 26 H 1.09000 * 109.47383 * 300.00668 * 9 7 2 27 27 H 0.97003 * 119.99897 * 0.02562 * 10 9 7 28 28 H 1.08001 * 119.67121 * 0.02562 * 14 13 11 29 29 H 1.08000 * 119.41510 * 180.26196 * 15 14 13 30 30 H 1.07999 * 119.93623 * 179.72290 * 16 15 14 31 31 H 1.07997 * 120.19139 * 0.02562 * 18 17 16 32 32 H 0.96698 * 114.00106 * 90.00037 * 20 19 18 33 33 H 1.08002 * 119.55999 * 180.02562 * 21 19 18 34 34 H 1.08004 * 120.11992 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6128 -0.0005 11 6 1.7536 -4.8834 -0.0011 12 8 0.5581 -5.1056 -0.0011 13 6 2.7118 -6.0043 -0.0005 14 6 4.0724 -5.7639 -0.1243 15 6 4.9806 -6.8149 -0.1188 16 6 4.5634 -8.1072 -0.0040 17 6 3.1934 -8.3982 0.1180 18 6 2.7403 -9.7228 0.2381 19 6 1.4020 -9.9706 0.3555 20 8 0.9647 -11.2519 0.4721 21 6 0.4770 -8.9226 0.3582 22 6 0.8862 -7.6292 0.2433 23 6 2.2525 -7.3398 0.1211 24 1 -0.4849 0.8401 -0.0004 25 1 0.6240 -2.5567 -0.8904 26 1 0.6246 -2.5571 0.8896 27 1 3.1566 -3.4356 -0.0002 28 1 4.4294 -4.7492 -0.2211 29 1 6.0358 -6.6046 -0.2122 30 1 5.2867 -8.9092 -0.0065 31 1 3.4460 -10.5403 0.2385 32 1 0.9046 -11.5654 1.3849 33 1 -0.5763 -9.1419 0.4525 34 1 0.1609 -6.8290 0.2464 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001635343348.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:15 Heat of formation + Delta-G solvation = -35.364455 kcal Electronic energy + Delta-G solvation = -19364.288771 eV Core-core repulsion = 16227.071347 eV Total energy + Delta-G solvation = -3137.217424 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.70896 -38.91187 -37.76390 -35.41996 -34.27095 -32.65929 -32.24258 -29.95929 -29.01176 -27.15295 -24.17307 -23.04893 -22.90665 -21.86881 -20.12001 -18.63123 -17.72564 -17.22552 -16.35822 -15.92666 -15.57219 -15.23288 -14.74975 -14.65414 -14.52535 -13.93464 -13.76796 -13.27748 -13.06655 -12.75697 -12.31876 -12.01598 -11.88002 -11.75647 -11.37600 -11.06756 -11.03819 -10.91101 -10.66638 -10.31414 -9.85839 -9.46380 -8.97962 -8.79298 -8.55931 -8.08897 -7.77954 -6.20691 -4.28210 0.29172 0.92825 1.81686 2.77740 3.23055 3.28012 3.29304 3.51152 3.90017 4.03855 4.25174 4.31779 4.71594 4.81371 4.85628 4.99466 5.15599 5.17240 5.20816 5.30501 5.46095 5.76986 5.89374 6.02483 6.09727 6.13736 6.30393 6.47164 6.57394 6.81689 6.84067 7.24109 7.35397 7.44766 7.52665 7.59719 7.91174 8.49914 8.70122 8.96609 9.38209 10.89407 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.033887 B = 0.003889 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.082318 B = 7198.089090 C = 7998.787593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.063 0.937 9 C 0.248 3.752 10 N -0.700 5.700 11 C 0.541 3.459 12 O -0.547 6.547 13 C -0.103 4.103 14 C -0.086 4.086 15 C -0.117 4.117 16 C -0.094 4.094 17 C -0.044 4.044 18 C -0.147 4.147 19 C 0.110 3.890 20 O -0.502 6.502 21 C -0.151 4.151 22 C -0.086 4.086 23 C -0.026 4.026 24 H 0.267 0.733 25 H 0.031 0.969 26 H 0.031 0.969 27 H 0.391 0.609 28 H 0.132 0.868 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.131 0.869 32 H 0.388 0.612 33 H 0.129 0.871 34 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.786 -17.498 1.972 19.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.347 5.347 11 C 0.328 3.672 12 O -0.429 6.429 13 C -0.106 4.106 14 C -0.105 4.105 15 C -0.135 4.135 16 C -0.112 4.112 17 C -0.044 4.044 18 C -0.165 4.165 19 C 0.066 3.934 20 O -0.313 6.313 21 C -0.169 4.169 22 C -0.103 4.103 23 C -0.027 4.027 24 H 0.077 0.923 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.225 0.775 28 H 0.150 0.850 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.149 0.851 32 H 0.244 0.756 33 H 0.147 0.853 34 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 7.723 -17.430 1.357 19.113 hybrid contribution 0.995 0.898 0.480 1.424 sum 8.718 -16.532 1.838 18.780 Atomic orbital electron populations 1.69964 1.06108 1.27517 1.48575 1.24944 0.94928 0.99458 0.94576 0.86459 0.79425 0.82228 0.78723 1.20026 1.21027 1.20024 1.21165 0.93242 0.90385 1.53684 0.91908 1.19193 0.88250 0.81693 0.98073 1.46461 1.11411 1.05892 1.70915 1.18093 0.87859 0.83237 0.78059 1.90497 1.16451 1.83778 1.52141 1.20270 0.93965 0.93371 1.02997 1.21432 0.92063 0.99869 0.97139 1.20766 0.99868 0.92440 1.00446 1.21104 0.94170 0.97117 0.98851 1.17878 0.93381 0.92441 1.00680 1.21121 0.95179 0.95696 1.04545 1.18255 0.91328 0.83698 1.00084 1.84816 1.88404 1.25802 1.32241 1.21303 1.00111 0.92440 1.03059 1.22337 0.96335 0.97985 0.93625 1.17963 0.93738 0.91422 0.99586 0.92313 0.95124 0.95142 0.77470 0.85038 0.85317 0.85401 0.85145 0.75590 0.85336 0.80436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.67 13.29 55.43 0.74 -24.93 16 2 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.55 -14.55 9.28 -34.44 -0.32 -14.87 16 8 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 9 C 0.25 6.45 5.43 -5.20 -0.03 6.42 16 10 N -0.70 -14.62 5.50 -62.55 -0.34 -14.96 16 11 C 0.54 11.02 7.72 -12.50 -0.10 10.92 16 12 O -0.55 -12.68 13.38 5.28 0.07 -12.61 16 13 C -0.10 -1.71 5.90 -104.62 -0.62 -2.32 16 14 C -0.09 -1.14 9.51 -39.16 -0.37 -1.51 16 15 C -0.12 -1.27 9.92 -40.04 -0.40 -1.67 16 16 C -0.09 -1.03 9.75 -39.40 -0.38 -1.41 16 17 C -0.04 -0.58 5.74 -106.86 -0.61 -1.20 16 18 C -0.15 -1.75 9.68 -39.32 -0.38 -2.13 16 19 C 0.11 1.37 6.65 -39.59 -0.26 1.11 16 20 O -0.50 -5.24 13.47 -19.41 -0.26 -5.50 16 21 C -0.15 -2.07 9.89 -39.76 -0.39 -2.46 16 22 C -0.09 -1.39 9.21 -39.60 -0.36 -1.76 16 23 C -0.03 -0.42 5.76 -106.53 -0.61 -1.03 16 24 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 25 H 0.03 0.88 8.14 -51.92 -0.42 0.45 16 26 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.39 6.96 6.39 -40.82 -0.26 6.70 16 28 H 0.13 1.52 6.42 -52.49 -0.34 1.19 16 29 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 30 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 31 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 32 H 0.39 2.08 9.06 45.56 0.41 2.49 16 33 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 34 H 0.18 3.27 4.85 -52.63 -0.26 3.02 16 LS Contribution 297.52 15.07 4.48 4.48 Total: -1.00 -32.42 297.52 -7.79 -40.21 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -2.51 Total: 8.05 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -4.94 Total: -10.24 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 0.39 Total: -39.90 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.19 Total: -18.11 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.42 -7.79 -40.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635343348.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.847 kcal (2) G-P(sol) polarization free energy of solvation -32.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds