Wall clock time and date at job start Mon Mar 30 2020 01:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40083 * 126.03355 * 2 1 4 4 C 1.30832 * 108.23477 * 180.10876 * 3 2 1 5 5 C 1.50704 * 125.88873 * 179.91164 * 4 3 2 6 6 N 1.46903 * 109.47018 * 274.69176 * 5 4 3 7 7 C 1.47957 * 111.00079 * 170.00106 * 6 5 4 8 8 C 1.53937 * 86.18208 * 222.41605 * 7 6 5 9 9 O 1.42896 * 113.73148 * 269.25755 * 8 7 6 10 10 C 1.50694 * 113.73443 * 138.07827 * 8 7 6 11 11 H 1.08000 * 120.00563 * 0.02562 * 10 8 7 12 12 C 1.37885 * 119.99902 * 180.02562 * 10 8 7 13 13 N 1.31516 * 119.99913 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 119.99766 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47353 * 269.99586 * 14 12 10 16 16 H 1.48501 * 109.47293 * 30.00037 * 14 12 10 17 17 H 1.48504 * 109.46680 * 149.99835 * 14 12 10 18 18 C 1.47958 * 111.00224 * 70.63784 * 6 5 4 19 19 C 1.39855 * 108.22049 * 359.64366 * 4 3 2 20 20 C 1.34980 * 126.03936 * 179.70540 * 2 1 3 21 21 Cl 1.73602 * 126.14017 * 0.02562 * 20 2 1 22 22 H 1.09000 * 109.47242 * 270.29318 * 1 2 3 23 23 H 1.09002 * 109.47398 * 30.29831 * 1 2 3 24 24 H 1.09004 * 109.46855 * 150.29311 * 1 2 3 25 25 H 1.08997 * 109.47128 * 154.69220 * 5 4 3 26 26 H 1.08999 * 109.47288 * 34.68478 * 5 4 3 27 27 H 1.08999 * 113.76060 * 108.09601 * 7 6 5 28 28 H 1.09003 * 113.75638 * 336.73185 * 7 6 5 29 29 H 0.96709 * 114.00030 * 178.09403 * 9 8 7 30 30 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 31 31 H 1.09003 * 113.76031 * 23.26533 * 18 6 5 32 32 H 1.08999 * 113.76380 * 251.90073 * 18 6 5 33 33 H 1.08003 * 126.05318 * 180.22428 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2890 1.1328 0.0000 4 6 3.5347 0.7329 -0.0024 5 6 4.7491 1.6253 -0.0051 6 7 5.0738 2.0061 -1.3863 7 6 6.1058 3.0659 -1.4155 8 6 5.2575 3.7184 -2.5219 9 8 5.6158 3.3034 -3.8415 10 6 5.1352 5.2146 -2.3896 11 1 5.6213 5.7261 -1.5721 12 6 4.4025 5.9306 -3.3125 13 7 3.8109 5.3079 -4.3085 14 14 4.2503 7.7851 -3.1481 15 1 3.0618 8.1129 -2.3203 16 1 5.4709 8.3263 -2.4981 17 1 4.0971 8.3905 -4.4955 18 6 4.0665 2.9445 -1.9284 19 6 3.5451 -0.6656 0.0043 20 6 2.2591 -1.0915 0.0056 21 17 1.7279 -2.7442 0.0135 22 1 -0.3634 0.0053 1.0276 23 1 -0.3634 0.8873 -0.5185 24 1 -0.3633 -0.8926 -0.5093 25 1 5.5929 1.0921 0.4327 26 1 4.5427 2.5217 0.5798 27 1 7.0814 2.7197 -1.7567 28 1 6.1584 3.6530 -0.4986 29 1 5.0662 3.6886 -4.5378 30 1 3.2952 5.8117 -4.9574 31 1 3.5225 3.4961 -1.1616 32 1 3.4127 2.5012 -2.6795 33 1 4.4229 -1.2948 0.0078 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001654252007.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:18 Heat of formation + Delta-G solvation = 65.223342 kcal Electronic energy + Delta-G solvation = -18597.302915 eV Core-core repulsion = 15494.307206 eV Total energy + Delta-G solvation = -3102.995708 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.18993 -38.84964 -36.96077 -34.56922 -33.27587 -32.01101 -30.06080 -29.30823 -26.72533 -25.29860 -24.95402 -22.38384 -21.15219 -19.69923 -18.52693 -17.34502 -16.99536 -15.77894 -15.08605 -14.93572 -14.80685 -14.26671 -13.96405 -13.83548 -13.44930 -12.98859 -12.63328 -12.42117 -12.07491 -11.83213 -11.77590 -11.60937 -11.37031 -11.07901 -10.81042 -10.69073 -10.36196 -10.33737 -9.96254 -9.42227 -9.02356 -8.60279 -8.53788 -8.14543 -7.76245 -6.21783 -4.31322 1.41590 1.70758 2.63725 2.77851 3.22314 3.29544 3.33056 4.29138 4.41492 4.89612 4.96763 5.03696 5.10533 5.24485 5.33812 5.53257 5.74471 5.86807 6.00059 6.01516 6.15356 6.37776 6.52471 6.61382 6.72892 6.73963 7.14135 7.20799 7.41280 7.70503 7.80898 7.99306 8.05552 8.70057 9.38410 9.70254 10.84161 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.029403 B = 0.004459 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.067136 B = 6278.468662 C = 6669.464264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.371 5.371 3 N -0.259 5.259 4 C 0.103 3.897 5 C 0.095 3.905 6 N -0.474 5.474 7 C 0.010 3.990 8 C 0.243 3.757 9 O -0.572 6.572 10 C -0.536 4.536 11 H 0.065 0.935 12 C 0.071 3.929 13 N -0.898 5.898 14 Si 0.903 3.097 15 H -0.279 1.279 16 H -0.272 1.272 17 H -0.284 1.284 18 C -0.003 4.003 19 C -0.228 4.228 20 C 0.115 3.885 21 Cl -0.016 7.016 22 H 0.076 0.924 23 H 0.095 0.905 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.389 0.611 30 H 0.270 0.730 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.503 -11.733 9.074 15.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.156 5.156 3 N -0.083 5.083 4 C -0.063 4.063 5 C -0.035 4.035 6 N -0.198 5.198 7 C -0.119 4.119 8 C 0.201 3.799 9 O -0.384 6.384 10 C -0.575 4.575 11 H 0.084 0.916 12 C -0.131 4.131 13 N -0.539 5.539 14 Si 0.730 3.270 15 H -0.205 1.205 16 H -0.196 1.196 17 H -0.210 1.210 18 C -0.132 4.132 19 C -0.259 4.259 20 C -0.037 4.037 21 Cl 0.012 6.988 22 H 0.094 0.906 23 H 0.114 0.886 24 H 0.104 0.896 25 H 0.107 0.893 26 H 0.072 0.928 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.243 0.757 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -6.059 -11.839 8.921 16.014 hybrid contribution -0.595 0.975 0.285 1.177 sum -6.654 -10.864 9.206 15.718 Atomic orbital electron populations 1.21899 0.74040 1.04884 1.03481 1.48644 1.06818 1.02344 1.57764 1.77645 1.01529 1.04763 1.24342 1.22131 0.93234 0.93289 0.97656 1.21074 0.91405 0.96478 0.94536 1.68678 1.07454 1.30239 1.13418 1.24165 0.96983 0.91661 0.99063 1.19763 0.88011 0.90856 0.81259 1.86032 1.62190 1.73420 1.16757 1.21656 1.31989 0.92193 1.11628 0.91634 1.25049 0.94068 0.99273 0.94664 1.69356 1.33655 1.36327 1.14539 0.86425 0.78598 0.84432 0.77560 1.20485 1.19646 1.20956 1.24650 0.96958 0.92824 0.98776 1.21027 0.94833 0.94879 1.15162 1.21621 0.91565 0.82520 1.08037 1.98380 1.90773 1.12448 1.97189 0.90570 0.88599 0.89574 0.89314 0.92788 0.90382 0.91516 0.75659 0.91957 0.91912 0.91505 0.82544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.00 11.31 59.85 0.68 1.68 16 2 N -0.37 -5.51 4.01 -64.90 -0.26 -5.77 16 3 N -0.26 -4.70 12.47 33.67 0.42 -4.28 16 4 C 0.10 1.81 6.28 -82.41 -0.52 1.30 16 5 C 0.10 1.68 5.38 -4.97 -0.03 1.65 16 6 N -0.47 -10.13 6.25 -239.69 -1.50 -11.63 16 7 C 0.01 0.21 7.36 -2.77 -0.02 0.19 16 8 C 0.24 6.26 1.44 -90.84 -0.13 6.13 16 9 O -0.57 -15.80 13.48 -35.23 -0.47 -16.28 16 10 C -0.54 -14.49 8.62 -34.44 -0.30 -14.79 16 11 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 12 C 0.07 1.91 5.40 -17.82 -0.10 1.81 16 13 N -0.90 -24.57 11.09 55.43 0.61 -23.95 16 14 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 C 0.00 -0.07 6.78 -2.77 -0.02 -0.09 16 19 C -0.23 -3.50 10.72 -39.97 -0.43 -3.92 16 20 C 0.12 1.63 7.46 -17.16 -0.13 1.50 16 21 Cl -0.02 -0.17 28.76 -51.86 -1.49 -1.66 16 22 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.09 0.70 7.80 -51.93 -0.41 0.30 16 25 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 26 H 0.05 0.95 7.69 -51.93 -0.40 0.55 16 27 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 28 H 0.07 1.34 7.74 -51.93 -0.40 0.94 16 29 H 0.39 10.92 6.46 45.56 0.29 11.22 16 30 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.06 1.54 7.73 -51.93 -0.40 1.14 16 32 H 0.07 1.75 8.14 -51.93 -0.42 1.33 16 33 H 0.16 2.06 8.06 -52.48 -0.42 1.64 16 LS Contribution 299.99 15.07 4.52 4.52 Total: -1.00 -30.17 299.99 -7.57 -37.75 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -3.40 Total: 10.24 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -0.99 Total: -4.55 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: -0.72 Total: -45.64 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.47 Total: -16.28 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -1.49 Total: -1.66 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.17 -7.57 -37.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654252007.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.970 kcal (2) G-P(sol) polarization free energy of solvation -30.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds