Wall clock time and date at job start Mon Mar 30 2020 00:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 O 1.42903 * 112.93937 * 50.61448 * 9 7 2 11 11 C 1.53929 * 113.73692 * 279.04542 * 9 7 2 12 12 N 1.48186 * 86.10288 * 221.95620 * 11 9 7 13 13 C 1.46905 * 111.07059 * 137.52085 * 12 11 9 14 14 C 1.53004 * 109.46996 * 90.57002 * 13 12 11 15 15 N 1.46499 * 109.46705 * 180.02562 * 14 13 12 16 16 C 1.35051 * 126.03526 * 124.71729 * 15 14 13 17 17 C 1.35377 * 107.72507 * 179.83480 * 16 15 14 18 18 Cl 1.73599 * 126.04765 * 180.17991 * 17 16 15 19 19 C 1.39930 * 107.90773 * 0.42249 * 17 16 15 20 20 N 1.30850 * 108.21450 * 359.73459 * 19 17 16 21 21 C 1.47961 * 90.79887 * 24.60080 * 12 11 9 22 22 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 23 23 H 0.96705 * 114.00014 * 309.67001 * 10 9 7 24 24 H 1.09000 * 113.76038 * 336.23957 * 11 9 7 25 25 H 1.09006 * 113.75722 * 107.60320 * 11 9 7 26 26 H 1.09000 * 109.47184 * 210.57093 * 13 12 11 27 27 H 1.08997 * 109.47328 * 330.56750 * 13 12 11 28 28 H 1.08999 * 109.46584 * 299.99671 * 14 13 12 29 29 H 1.08997 * 109.47288 * 59.99723 * 14 13 12 30 30 H 1.07990 * 126.13640 * 359.97022 * 16 15 14 31 31 H 1.08001 * 125.89478 * 179.76071 * 19 17 16 32 32 H 1.08999 * 113.76238 * 221.08440 * 21 12 11 33 33 H 1.08996 * 113.85716 * 89.73026 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 8 0.2451 -2.5660 -1.0073 11 6 0.7555 -2.9221 1.3999 12 7 1.1892 -4.2894 1.0281 13 6 1.8773 -4.9477 2.1467 14 6 0.8581 -5.7141 2.9924 15 7 1.5443 -6.3701 4.1082 16 6 1.2464 -6.2283 5.4178 17 6 2.1069 -7.0004 6.1222 18 17 2.1433 -7.1759 7.8489 19 6 2.9655 -7.6277 5.2126 20 7 2.6290 -7.2506 4.0056 21 6 2.1612 -3.7396 0.0575 22 1 -0.4850 0.8400 0.0004 23 1 -0.3470 -1.8016 -1.0247 24 1 1.3275 -2.4876 2.2198 25 1 -0.3219 -2.8225 1.5319 26 1 2.6218 -5.6421 1.7573 27 1 2.3693 -4.1959 2.7637 28 1 0.1137 -5.0197 3.3818 29 1 0.3660 -6.4659 2.3754 30 1 0.4611 -5.6116 5.8292 31 1 3.7673 -8.3064 5.4633 32 1 2.2048 -4.2919 -0.8812 33 1 3.1458 -3.5443 0.4821 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658381612.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:38 Heat of formation + Delta-G solvation = 60.880977 kcal Electronic energy + Delta-G solvation = -18174.895170 eV Core-core repulsion = 15071.711162 eV Total energy + Delta-G solvation = -3103.184007 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.34979 -39.09662 -36.54973 -34.91732 -33.36778 -32.14868 -30.47318 -29.25933 -26.68866 -25.23578 -24.48277 -21.89179 -21.29500 -20.56975 -18.74748 -17.46819 -17.27695 -15.71380 -15.24674 -15.05782 -14.97465 -14.42030 -14.23155 -13.86812 -13.49166 -13.42532 -12.98649 -12.29912 -12.07416 -11.77906 -11.64525 -11.51117 -11.42416 -11.11101 -10.83502 -10.73635 -10.55409 -10.35746 -10.09100 -9.64310 -9.39783 -8.71374 -8.53484 -8.36876 -7.95459 -6.32828 -4.42986 1.63952 1.85970 2.46728 2.70034 3.16943 3.22655 3.25254 4.19836 4.33940 4.61989 4.73691 4.91061 4.93026 5.17127 5.29147 5.41623 5.45644 5.74685 5.82219 5.87914 6.08180 6.19170 6.23026 6.32447 6.57269 6.75525 6.90792 7.01268 7.26168 7.43707 7.68803 7.79935 7.92584 8.58890 9.27522 9.53837 10.73190 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.028603 B = 0.003623 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.680535 B = 7726.417315 C = 8204.316146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.903 3.097 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.541 4.541 8 H 0.065 0.935 9 C 0.246 3.754 10 O -0.571 6.571 11 C -0.017 4.017 12 N -0.479 5.479 13 C 0.010 3.990 14 C 0.141 3.859 15 N -0.353 5.353 16 C 0.075 3.925 17 C -0.194 4.194 18 Cl -0.050 7.050 19 C 0.058 3.942 20 N -0.278 5.278 21 C 0.014 3.986 22 H 0.272 0.728 23 H 0.388 0.612 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.044 0.956 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.182 0.818 31 H 0.189 0.811 32 H 0.078 0.922 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.686 -10.380 11.281 15.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.130 4.130 3 Si 0.730 3.270 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.579 4.579 8 H 0.083 0.917 9 C 0.205 3.795 10 O -0.382 6.382 11 C -0.146 4.146 12 N -0.202 5.202 13 C -0.120 4.120 14 C 0.021 3.979 15 N -0.135 5.135 16 C -0.074 4.074 17 C -0.233 4.233 18 Cl -0.022 7.022 19 C -0.129 4.129 20 N -0.099 5.099 21 C -0.115 4.115 22 H 0.082 0.918 23 H 0.242 0.758 24 H 0.079 0.921 25 H 0.093 0.907 26 H 0.097 0.903 27 H 0.063 0.937 28 H 0.118 0.882 29 H 0.115 0.885 30 H 0.199 0.801 31 H 0.206 0.794 32 H 0.096 0.904 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.500 -11.358 9.699 15.010 hybrid contribution 0.624 2.028 1.750 2.751 sum 2.123 -9.329 11.449 14.921 Atomic orbital electron populations 1.69411 1.06076 1.27991 1.50254 1.25043 0.94995 0.99635 0.93310 0.86477 0.79590 0.82044 0.78892 1.19885 1.20960 1.20080 1.21604 0.93688 0.90697 1.51944 0.91700 1.19708 0.85363 0.90783 0.83692 1.86049 1.47016 1.49417 1.55709 1.24881 1.00848 0.86852 1.02001 1.68446 1.26048 1.17266 1.08455 1.22837 0.95918 0.98656 0.94550 1.21810 0.94218 0.96552 0.85333 1.48721 1.24990 1.34429 1.05390 1.22317 1.00484 1.00245 0.84328 1.20740 1.05503 1.10820 0.86260 1.98313 1.98380 1.97308 1.08195 1.23854 0.99900 1.00342 0.88804 1.77503 1.02414 1.08721 1.21291 1.24113 0.94823 0.96612 0.95937 0.91819 0.75758 0.92089 0.90677 0.90339 0.93737 0.88231 0.88515 0.80062 0.79417 0.90380 0.91555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.34 11.20 55.43 0.62 -22.72 16 2 C 0.07 1.86 5.40 -17.82 -0.10 1.77 16 3 Si 0.90 19.99 29.54 -169.99 -5.02 14.96 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.54 -14.09 8.61 -34.44 -0.30 -14.38 16 8 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 9 C 0.25 6.00 1.40 -90.84 -0.13 5.87 16 10 O -0.57 -14.91 13.48 -35.23 -0.48 -15.38 16 11 C -0.02 -0.36 7.37 -2.64 -0.02 -0.38 16 12 N -0.48 -9.33 6.16 -238.04 -1.47 -10.79 16 13 C 0.01 0.16 4.99 -3.82 -0.02 0.14 16 14 C 0.14 1.90 6.82 -4.04 -0.03 1.87 16 15 N -0.35 -4.70 3.68 -61.33 -0.23 -4.93 16 16 C 0.08 0.86 11.43 -17.16 -0.20 0.67 16 17 C -0.19 -2.24 6.65 -39.97 -0.27 -2.51 16 18 Cl -0.05 -0.51 29.30 -51.86 -1.52 -2.03 16 19 C 0.06 0.68 12.02 -17.34 -0.21 0.47 16 20 N -0.28 -3.94 12.42 30.64 0.38 -3.56 16 21 C 0.01 0.29 7.34 -2.76 -0.02 0.27 16 22 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 23 H 0.39 10.28 6.61 45.56 0.30 10.58 16 24 H 0.06 1.32 7.44 -51.93 -0.39 0.93 16 25 H 0.07 1.67 8.14 -51.93 -0.42 1.24 16 26 H 0.08 1.30 8.08 -51.93 -0.42 0.88 16 27 H 0.04 0.76 7.39 -51.93 -0.38 0.37 16 28 H 0.10 1.21 8.07 -51.93 -0.42 0.79 16 29 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.18 1.56 8.06 -52.49 -0.42 1.14 16 31 H 0.19 1.65 8.06 -52.49 -0.42 1.22 16 32 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 33 H 0.07 1.33 7.88 -51.93 -0.41 0.92 16 LS Contribution 301.24 15.07 4.54 4.54 Total: -1.00 -27.64 301.24 -7.82 -35.45 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -3.38 Total: 10.67 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -1.28 Total: -6.20 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: -0.69 Total: -42.01 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.48 Total: -15.38 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.96 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.52 Total: -2.03 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -27.64 -7.82 -35.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658381612.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.335 kcal (2) G-P(sol) polarization free energy of solvation -27.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds