Wall clock time and date at job start Mon Mar 30 2020 00:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 O 1.42903 * 112.93937 * 50.61448 * 9 7 2 11 11 C 1.53929 * 113.73692 * 279.04542 * 9 7 2 12 12 N 1.48186 * 86.10288 * 221.95620 * 11 9 7 13 13 C 1.46905 * 111.07059 * 137.52085 * 12 11 9 14 14 C 1.53004 * 109.46996 * 90.57002 * 13 12 11 15 15 N 1.46499 * 109.46705 * 180.02562 * 14 13 12 16 16 C 1.35051 * 126.03526 * 124.71729 * 15 14 13 17 17 C 1.35377 * 107.72507 * 179.83480 * 16 15 14 18 18 Cl 1.73599 * 126.04765 * 180.17991 * 17 16 15 19 19 C 1.39930 * 107.90773 * 0.42249 * 17 16 15 20 20 N 1.30850 * 108.21450 * 359.73459 * 19 17 16 21 21 C 1.47961 * 90.79887 * 24.60080 * 12 11 9 22 22 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 23 23 H 0.96705 * 114.00014 * 309.67001 * 10 9 7 24 24 H 1.09000 * 113.76038 * 336.23957 * 11 9 7 25 25 H 1.09006 * 113.75722 * 107.60320 * 11 9 7 26 26 H 1.09000 * 109.47184 * 210.57093 * 13 12 11 27 27 H 1.08997 * 109.47328 * 330.56750 * 13 12 11 28 28 H 1.08999 * 109.46584 * 299.99671 * 14 13 12 29 29 H 1.08997 * 109.47288 * 59.99723 * 14 13 12 30 30 H 1.07990 * 126.13640 * 359.97022 * 16 15 14 31 31 H 1.08001 * 125.89478 * 179.76071 * 19 17 16 32 32 H 1.08999 * 113.76238 * 221.08440 * 21 12 11 33 33 H 1.08996 * 113.85716 * 89.73026 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 8 0.2451 -2.5660 -1.0073 11 6 0.7555 -2.9221 1.3999 12 7 1.1892 -4.2894 1.0281 13 6 1.8773 -4.9477 2.1467 14 6 0.8581 -5.7141 2.9924 15 7 1.5443 -6.3701 4.1082 16 6 1.2464 -6.2283 5.4178 17 6 2.1069 -7.0004 6.1222 18 17 2.1433 -7.1759 7.8489 19 6 2.9655 -7.6277 5.2126 20 7 2.6290 -7.2506 4.0056 21 6 2.1612 -3.7396 0.0575 22 1 -0.4850 0.8400 0.0004 23 1 -0.3470 -1.8016 -1.0247 24 1 1.3275 -2.4876 2.2198 25 1 -0.3219 -2.8225 1.5319 26 1 2.6218 -5.6421 1.7573 27 1 2.3693 -4.1959 2.7637 28 1 0.1137 -5.0197 3.3818 29 1 0.3660 -6.4659 2.3754 30 1 0.4611 -5.6116 5.8292 31 1 3.7673 -8.3064 5.4633 32 1 2.2048 -4.2919 -0.8812 33 1 3.1458 -3.5443 0.4821 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001658381612.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:38 Heat of formation + Delta-G solvation = 40.578377 kcal Electronic energy + Delta-G solvation = -18175.775556 eV Core-core repulsion = 15071.711162 eV Total energy + Delta-G solvation = -3104.064394 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.28458 -40.77805 -37.39845 -36.56226 -34.69189 -34.12523 -31.55111 -30.47701 -28.34104 -26.94894 -25.96546 -23.26212 -22.20582 -21.66558 -20.54387 -19.20606 -18.42542 -17.20215 -16.86801 -16.55970 -16.27159 -15.74109 -15.57346 -15.15239 -14.91826 -14.57278 -14.17637 -13.86675 -13.63092 -13.37728 -13.11322 -12.95324 -12.72086 -12.44859 -12.39283 -12.30852 -12.19804 -11.82960 -11.42572 -11.21331 -10.65744 -10.61897 -10.17687 -9.69436 -9.43107 -8.26053 -6.43684 0.72273 0.95416 1.41958 1.43873 1.51316 1.58181 1.78277 2.36319 2.94447 3.03784 3.47566 3.80164 3.85081 3.94220 4.13069 4.17407 4.19933 4.32871 4.40975 4.54167 4.58994 4.72056 4.80777 4.86350 5.12641 5.34351 5.37976 5.40377 5.72715 5.80844 5.97789 6.18760 6.51590 6.60777 7.29479 7.50570 8.78547 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.028603 B = 0.003623 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.680535 B = 7726.417315 C = 8204.316146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.032 3.968 3 Si 0.963 3.037 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.271 1.271 7 C -0.566 4.566 8 H 0.061 0.939 9 C 0.218 3.782 10 O -0.582 6.582 11 C -0.002 4.002 12 N -0.474 5.474 13 C 0.018 3.982 14 C 0.150 3.850 15 N -0.365 5.365 16 C 0.077 3.923 17 C -0.203 4.203 18 Cl -0.039 7.039 19 C 0.061 3.939 20 N -0.315 5.315 21 C 0.019 3.981 22 H 0.274 0.726 23 H 0.383 0.617 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.038 0.962 28 H 0.115 0.885 29 H 0.098 0.902 30 H 0.209 0.791 31 H 0.213 0.787 32 H 0.078 0.922 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.015 -10.523 12.594 16.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.168 4.168 3 Si 0.788 3.212 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.196 1.196 7 C -0.604 4.604 8 H 0.079 0.921 9 C 0.177 3.823 10 O -0.393 6.393 11 C -0.131 4.131 12 N -0.197 5.197 13 C -0.112 4.112 14 C 0.030 3.970 15 N -0.147 5.147 16 C -0.071 4.071 17 C -0.241 4.241 18 Cl -0.011 7.011 19 C -0.125 4.125 20 N -0.137 5.137 21 C -0.110 4.110 22 H 0.084 0.916 23 H 0.236 0.764 24 H 0.078 0.922 25 H 0.086 0.914 26 H 0.094 0.906 27 H 0.057 0.943 28 H 0.133 0.867 29 H 0.116 0.884 30 H 0.226 0.774 31 H 0.230 0.770 32 H 0.096 0.904 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.835 -11.521 11.024 16.051 hybrid contribution 0.544 2.018 1.393 2.512 sum 2.378 -9.503 12.417 15.816 Atomic orbital electron populations 1.69482 1.06984 1.28739 1.50275 1.25727 0.95794 1.02424 0.92888 0.85544 0.78437 0.78480 0.78776 1.19924 1.20423 1.19617 1.21873 0.93771 0.92003 1.52735 0.92090 1.20085 0.85852 0.91634 0.84693 1.86035 1.47373 1.49116 1.56785 1.24604 1.00217 0.87936 1.00370 1.68364 1.25983 1.16033 1.09305 1.22754 0.96456 0.98286 0.93665 1.21635 0.93411 0.96559 0.85423 1.48648 1.25343 1.34877 1.05837 1.22816 1.00756 0.99987 0.83587 1.20872 1.05486 1.10844 0.86928 1.98319 1.98353 1.97274 1.07119 1.24334 1.00042 0.99904 0.88249 1.77466 1.03499 1.10004 1.22687 1.24048 0.94996 0.95304 0.96631 0.91604 0.76432 0.92165 0.91434 0.90600 0.94337 0.86707 0.88388 0.77442 0.77012 0.90401 0.90711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.56 11.20 21.45 0.24 -47.31 16 2 C 0.03 1.65 5.40 84.65 0.46 2.10 16 3 Si 0.96 40.59 29.54 68.60 2.03 42.62 16 4 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 5 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 6 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 7 C -0.57 -29.50 8.61 25.60 0.22 -29.28 16 8 H 0.06 3.13 7.81 -2.91 -0.02 3.11 16 9 C 0.22 10.68 1.40 -10.89 -0.02 10.66 16 10 O -0.58 -30.77 13.48 -148.98 -2.01 -32.78 16 11 C 0.00 -0.09 7.37 86.36 0.64 0.55 16 12 N -0.47 -18.11 6.16 -910.24 -5.61 -23.71 16 13 C 0.02 0.56 4.99 86.30 0.43 0.99 16 14 C 0.15 3.81 6.82 86.38 0.59 4.40 16 15 N -0.37 -9.12 3.68 -347.93 -1.28 -10.40 16 16 C 0.08 1.60 11.43 83.54 0.95 2.55 16 17 C -0.20 -4.25 6.65 22.02 0.15 -4.10 16 18 Cl -0.04 -0.71 29.30 -2.72 -0.08 -0.79 16 19 C 0.06 1.34 12.02 85.25 1.02 2.36 16 20 N -0.32 -8.53 12.42 -56.98 -0.71 -9.23 16 21 C 0.02 0.79 7.34 86.41 0.63 1.43 16 22 H 0.27 13.51 8.31 -92.71 -0.77 12.74 16 23 H 0.38 20.63 6.61 -74.05 -0.49 20.15 16 24 H 0.06 2.57 7.44 -2.39 -0.02 2.55 16 25 H 0.07 2.98 8.14 -2.38 -0.02 2.97 16 26 H 0.08 2.44 8.08 -2.39 -0.02 2.42 16 27 H 0.04 1.27 7.39 -2.39 -0.02 1.25 16 28 H 0.11 2.54 8.07 -2.39 -0.02 2.52 16 29 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.21 2.97 8.06 -2.92 -0.02 2.95 16 31 H 0.21 3.27 8.06 -2.91 -0.02 3.24 16 32 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 33 H 0.07 2.97 7.88 -2.39 -0.02 2.95 16 Total: -1.00 -57.72 301.24 -1.70 -59.42 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: 0.64 Total: 30.52 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: 5.08 Total: -8.33 kcal Atomic # 7 Polarization: -83.30 SS G_CDS: -7.35 Total: -90.66 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -2.01 Total: -32.78 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.62 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -0.08 Total: -0.79 kcal Total: -57.72 -1.70 -59.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658381612.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.997 kcal (2) G-P(sol) polarization free energy of solvation -57.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds