Wall clock time and date at job start Mon Mar 30 2020 01:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46838 * 2 1 4 4 C 1.53001 * 109.47188 * 119.99484 * 2 1 3 5 5 N 1.46496 * 109.47050 * 175.00153 * 4 2 1 6 6 C 1.36940 * 119.99981 * 179.97438 * 5 4 2 7 7 H 1.07998 * 119.99801 * 0.02562 * 6 5 4 8 8 C 1.38813 * 119.99940 * 179.97438 * 6 5 4 9 9 N 1.31618 * 120.00181 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99960 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46885 * 90.00512 * 10 8 6 12 12 H 1.48497 * 109.47319 * 210.00611 * 10 8 6 13 13 H 1.48505 * 109.47085 * 330.00611 * 10 8 6 14 14 N 1.46491 * 109.47181 * 239.99917 * 2 1 3 15 15 C 1.34775 * 120.00524 * 84.99489 * 14 2 1 16 16 O 1.21701 * 119.99766 * 0.02562 * 15 14 2 17 17 C 1.46669 * 120.00542 * 179.97438 * 15 14 2 18 18 C 1.37894 * 126.22597 * 180.02562 * 17 15 14 19 19 C 1.39885 * 107.09352 * 180.23476 * 18 17 15 20 20 Cl 1.73604 * 126.07262 * 179.75548 * 19 18 17 21 21 C 1.35517 * 107.85386 * 359.62480 * 19 18 17 22 22 N 1.35627 * 108.85051 * 0.38061 * 21 19 18 23 23 H 0.97003 * 125.67840 * 179.75994 * 22 21 19 24 24 H 1.09002 * 109.47018 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47275 * 300.00370 * 1 2 3 26 26 H 1.08997 * 109.47220 * 60.00496 * 1 2 3 27 27 H 1.09002 * 109.47210 * 295.00174 * 4 2 1 28 28 H 1.09001 * 109.46861 * 55.00276 * 4 2 1 29 29 H 0.97001 * 120.00044 * 0.02562 * 5 4 2 30 30 H 0.96999 * 120.00081 * 179.97438 * 9 8 6 31 31 H 0.97005 * 120.00010 * 265.00175 * 14 2 1 32 32 H 1.08002 * 126.44873 * 359.96391 * 18 17 15 33 33 H 1.08000 * 125.57702 * 180.14836 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 7 3.5001 -0.8262 1.1906 6 6 4.1839 -1.4377 2.2073 7 1 3.6469 -1.8428 3.0522 8 6 5.5673 -1.5377 2.1515 9 7 6.2218 -1.0444 1.1216 10 14 6.5003 -2.3711 3.5387 11 1 6.6320 -3.8210 3.2456 12 1 7.8509 -1.7660 3.6606 13 1 5.7595 -2.1891 4.8129 14 7 2.0184 -0.6906 -1.1961 15 6 2.1470 -0.0184 -2.3571 16 8 1.8579 1.1625 -2.4118 17 6 2.6365 -0.7097 -3.5545 18 6 2.8171 -0.1502 -4.8018 19 6 3.2906 -1.1633 -5.6422 20 17 3.6773 -0.9969 -7.3265 21 6 3.3967 -2.2970 -4.9074 22 7 2.9988 -2.0349 -3.6375 23 1 2.9738 -2.6749 -2.9090 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.7517 -0.1581 2.1370 28 1 1.6055 -1.7197 1.2952 29 1 3.9824 -0.4620 0.4320 30 1 7.1885 -1.1140 1.0827 31 1 2.2490 -1.6318 -1.1525 32 1 2.6247 0.8758 -5.0789 33 1 3.7382 -3.2537 -5.2740 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669505739.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:48 Heat of formation + Delta-G solvation = -14.948031 kcal Electronic energy + Delta-G solvation = -18213.331281 eV Core-core repulsion = 15106.859082 eV Total energy + Delta-G solvation = -3106.472200 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.40005 -40.39604 -37.71219 -37.33006 -35.51456 -33.25941 -32.03730 -31.68172 -29.92810 -27.43802 -24.85909 -24.13933 -22.22432 -21.44888 -21.27231 -20.15703 -19.10667 -17.40083 -17.00032 -16.58999 -16.27920 -15.55553 -15.42525 -15.32275 -14.99669 -14.84690 -14.45464 -13.94253 -13.89510 -13.65718 -13.55006 -13.09092 -12.79565 -12.78524 -12.66848 -12.16397 -11.91985 -11.80551 -11.72935 -11.26134 -10.96855 -10.22421 -9.92482 -9.27573 -9.03317 -7.95820 -5.25860 0.33406 1.22146 1.44658 1.48033 1.49724 1.57939 1.97577 2.27764 2.30746 2.55267 3.38885 3.69693 3.87316 4.02431 4.07733 4.18548 4.28258 4.48301 4.56646 4.77696 4.84113 4.86248 4.92927 5.09443 5.29475 5.35143 5.44809 5.50633 5.58545 6.24436 6.27467 6.49553 7.09292 7.32243 8.05176 8.28729 9.26914 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.017892 B = 0.004641 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.597929 B = 6032.354324 C = 7219.183504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.140 3.860 3 H 0.062 0.938 4 C 0.145 3.855 5 N -0.744 5.744 6 C -0.245 4.245 7 H 0.080 0.920 8 C -0.071 4.071 9 N -0.968 5.968 10 Si 0.972 3.028 11 H -0.284 1.284 12 H -0.301 1.301 13 H -0.270 1.270 14 N -0.702 5.702 15 C 0.587 3.413 16 O -0.572 6.572 17 C -0.055 4.055 18 C -0.111 4.111 19 C -0.147 4.147 20 Cl -0.045 7.045 21 C 0.066 3.934 22 N -0.514 5.514 23 H 0.437 0.563 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.052 0.948 27 H 0.040 0.960 28 H 0.044 0.956 29 H 0.373 0.627 30 H 0.250 0.750 31 H 0.406 0.594 32 H 0.147 0.853 33 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.911 -5.515 -11.652 16.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.035 3.965 3 H 0.080 0.920 4 C 0.019 3.981 5 N -0.388 5.388 6 C -0.377 4.377 7 H 0.098 0.902 8 C -0.264 4.264 9 N -0.619 5.619 10 Si 0.801 3.199 11 H -0.211 1.211 12 H -0.228 1.228 13 H -0.195 1.195 14 N -0.352 5.352 15 C 0.376 3.624 16 O -0.452 6.452 17 C -0.169 4.169 18 C -0.138 4.138 19 C -0.179 4.179 20 Cl -0.017 7.017 21 C -0.073 4.073 22 N -0.111 5.111 23 H 0.278 0.722 24 H 0.093 0.907 25 H 0.101 0.899 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.205 0.795 30 H 0.059 0.941 31 H 0.241 0.759 32 H 0.165 0.835 33 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -10.128 -4.828 -11.433 16.019 hybrid contribution 1.204 -0.571 0.583 1.455 sum -8.923 -5.400 -10.850 15.050 Atomic orbital electron populations 1.22013 0.92385 1.03290 1.02824 1.21174 0.95541 0.96288 0.83492 0.92000 1.21151 0.84003 0.98176 0.94816 1.42554 1.01854 1.70019 1.24351 1.19637 0.89862 1.28404 0.99759 0.90195 1.25529 0.97512 1.02928 1.00392 1.69828 1.07026 1.52685 1.32325 0.85168 0.77534 0.77879 0.79297 1.21091 1.22801 1.19510 1.45778 1.66298 1.14225 1.08930 1.17208 0.77016 0.85842 0.82360 1.90796 1.52910 1.16285 1.85239 1.20124 1.15268 0.85740 0.95768 1.21229 1.02203 0.99836 0.90515 1.20009 1.14728 0.95728 0.87472 1.98316 1.93321 1.97945 1.12108 1.22355 1.01729 1.00563 0.82673 1.41953 1.48844 1.08939 1.11407 0.72151 0.90684 0.89918 0.92930 0.94228 0.93785 0.79457 0.94137 0.75895 0.83500 0.76361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.48 71.98 0.68 -2.89 16 2 C 0.14 4.44 2.73 44.99 0.12 4.56 16 3 H 0.06 2.34 7.58 -2.39 -0.02 2.32 16 4 C 0.15 5.18 5.82 86.38 0.50 5.69 16 5 N -0.74 -35.30 5.43 -343.45 -1.87 -37.16 16 6 C -0.25 -12.89 9.99 84.03 0.84 -12.05 16 7 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 8 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 9 N -0.97 -57.62 13.06 21.65 0.28 -57.34 16 10 Si 0.97 44.38 29.55 68.60 2.03 46.40 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 13 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 14 N -0.70 -21.32 4.51 -446.51 -2.02 -23.34 16 15 C 0.59 19.79 7.75 86.44 0.67 20.46 16 16 O -0.57 -23.27 16.55 -4.35 -0.07 -23.34 16 17 C -0.06 -1.58 7.05 40.35 0.28 -1.29 16 18 C -0.11 -3.13 10.65 22.59 0.24 -2.89 16 19 C -0.15 -3.43 6.66 22.04 0.15 -3.28 16 20 Cl -0.05 -0.96 29.30 -2.72 -0.08 -1.04 16 21 C 0.07 1.21 11.87 83.48 0.99 2.20 16 22 N -0.51 -10.66 6.00 -183.51 -1.10 -11.76 16 23 H 0.44 7.00 8.19 -92.71 -0.76 6.24 16 24 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.37 19.43 7.33 -92.71 -0.68 18.75 16 30 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 31 H 0.41 10.86 7.73 -92.70 -0.72 10.14 16 32 H 0.15 4.26 8.06 -2.91 -0.02 4.24 16 33 H 0.22 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -68.88 307.03 1.13 -67.75 By element: Atomic # 1 Polarization: 33.74 SS G_CDS: -0.99 Total: 32.75 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: 4.95 Total: 7.07 kcal Atomic # 7 Polarization: -124.89 SS G_CDS: -4.70 Total: -129.59 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.07 Total: -23.34 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.08 Total: -1.04 kcal Total: -68.88 1.13 -67.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669505739.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.802 kcal (2) G-P(sol) polarization free energy of solvation -68.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds