Wall clock time and date at job start Mon Mar 30 2020 00:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35982 * 117.00182 * 2 1 4 4 N 1.30314 * 121.66618 * 0.25129 * 3 2 1 5 5 S 1.69561 * 107.27824 * 180.24408 * 4 3 2 6 6 C 1.72020 * 95.85605 * 359.72816 * 5 4 3 7 7 C 1.35373 * 105.61394 * 359.97438 * 6 5 4 8 8 N 1.40961 * 122.71046 * 180.02562 * 7 6 5 9 9 C 1.34778 * 119.99676 * 6.06661 * 8 7 6 10 10 O 1.21607 * 119.99970 * 354.70411 * 9 8 7 11 11 N 1.34770 * 119.99730 * 174.71128 * 9 8 7 12 12 C 1.46502 * 120.00181 * 359.97438 * 11 9 8 13 13 C 1.46506 * 119.99915 * 179.72761 * 11 9 8 14 14 C 1.50699 * 109.46427 * 270.26891 * 13 11 9 15 15 H 1.07995 * 120.00716 * 0.02562 * 14 13 11 16 16 C 1.37883 * 119.99813 * 179.97438 * 14 13 11 17 17 N 1.31523 * 119.99696 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00232 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.46895 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46741 * 120.00382 * 18 16 14 21 21 H 1.48493 * 109.47079 * 240.00082 * 18 16 14 22 22 H 1.08997 * 109.47268 * 300.00254 * 1 2 3 23 23 H 1.09002 * 109.46876 * 59.99742 * 1 2 3 24 24 H 1.08999 * 109.47396 * 179.97438 * 1 2 3 25 25 H 1.07993 * 127.19143 * 180.02562 * 6 5 4 26 26 H 0.96993 * 119.99688 * 186.06920 * 8 7 6 27 27 H 1.09002 * 109.47150 * 269.73056 * 12 11 9 28 28 H 1.08996 * 109.47102 * 29.72639 * 12 11 9 29 29 H 1.09000 * 109.47369 * 149.72844 * 12 11 9 30 30 H 1.08996 * 109.47159 * 30.26455 * 13 11 9 31 31 H 1.08996 * 109.47137 * 150.27158 * 13 11 9 32 32 H 0.96996 * 119.99360 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 7 1.3688 2.3247 0.0049 5 16 2.4898 3.5968 -0.0039 6 6 3.8897 2.5971 -0.0061 7 6 3.4285 1.3243 0.0006 8 7 4.2841 0.2041 0.0017 9 6 5.6160 0.3736 0.1193 10 8 6.0880 1.4943 0.1275 11 7 6.4248 -0.6990 0.2276 12 6 5.8562 -2.0492 0.2181 13 6 7.8731 -0.5151 0.3494 14 6 8.4939 -0.4938 -1.0236 15 1 7.8719 -0.6057 -1.8993 16 6 9.8560 -0.3305 -1.1619 17 7 10.6135 -0.1937 -0.0954 18 14 10.6257 -0.3049 -2.8637 19 1 9.5656 -0.4780 -3.8890 20 1 11.3125 0.9944 -3.0768 21 1 11.6108 -1.4101 -2.9781 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 4.9209 2.9178 -0.0109 26 1 3.9143 -0.6886 -0.0823 27 1 5.6255 -2.3535 1.2390 28 1 4.9434 -2.0548 -0.3776 29 1 6.5764 -2.7438 -0.2142 30 1 8.0782 0.4283 0.8555 31 1 8.2964 -1.3368 0.9269 32 1 11.5717 -0.0792 -0.1927 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674175616.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:11 Heat of formation + Delta-G solvation = -1.050225 kcal Electronic energy + Delta-G solvation = -18538.315840 eV Core-core repulsion = 15434.490000 eV Total energy + Delta-G solvation = -3103.825839 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.70104 -39.35857 -36.85249 -34.99239 -34.06781 -32.55885 -29.93155 -28.10772 -27.71204 -25.89243 -24.21415 -22.77736 -20.61762 -19.51035 -18.91926 -17.59373 -16.71610 -16.59657 -16.34531 -15.73903 -15.04588 -14.93076 -14.61773 -13.97074 -13.69181 -13.29389 -13.17506 -12.78262 -12.25607 -12.18396 -11.96191 -11.28810 -11.25764 -11.17536 -10.96233 -10.87620 -10.67977 -10.61654 -10.16588 -9.66164 -9.26390 -9.04648 -8.46368 -7.92050 -7.49319 -6.07140 -4.11992 0.85503 1.47730 1.79303 2.45849 3.01419 3.14770 3.28564 3.36467 3.41034 3.83135 4.35224 4.48119 4.76008 4.98008 5.06769 5.27080 5.34603 5.43811 5.47799 5.82625 5.96480 6.08666 6.12550 6.59499 6.72611 7.01589 7.29298 7.44327 7.59686 7.90220 8.18923 8.48386 8.88294 9.12227 9.53484 11.00743 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.027632 B = 0.004645 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.058586 B = 6026.207379 C = 6522.311904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.299 6.299 3 C 0.297 3.703 4 N -0.526 5.526 5 S 0.275 5.725 6 C -0.214 4.214 7 C 0.091 3.909 8 N -0.665 5.665 9 C 0.701 3.299 10 O -0.567 6.567 11 N -0.608 5.608 12 C 0.083 3.917 13 C 0.259 3.741 14 C -0.528 4.528 15 H 0.058 0.942 16 C 0.062 3.938 17 N -0.894 5.894 18 Si 0.898 3.102 19 H -0.274 1.274 20 H -0.282 1.282 21 H -0.284 1.284 22 H 0.059 0.941 23 H 0.059 0.941 24 H 0.100 0.900 25 H 0.225 0.775 26 H 0.408 0.592 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.080 0.920 30 H 0.047 0.953 31 H 0.036 0.964 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.056 -0.337 1.212 18.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.205 6.205 3 C 0.078 3.922 4 N -0.365 5.365 5 S 0.421 5.579 6 C -0.365 4.365 7 C -0.021 4.021 8 N -0.315 5.315 9 C 0.403 3.597 10 O -0.445 6.445 11 N -0.343 5.343 12 C -0.062 4.062 13 C 0.140 3.860 14 C -0.567 4.567 15 H 0.076 0.924 16 C -0.140 4.140 17 N -0.533 5.533 18 Si 0.726 3.274 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.210 1.210 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.118 0.882 25 H 0.242 0.758 26 H 0.246 0.754 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.099 0.901 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.718 1.710 1.312 18.842 hybrid contribution 1.134 -2.044 -1.010 2.546 sum -17.584 -0.333 0.303 17.590 Atomic orbital electron populations 1.22938 0.76714 1.03374 1.02515 1.86214 1.23009 1.22666 1.88634 1.19694 0.88673 0.85795 0.98007 1.76393 1.26726 1.01033 1.32311 1.83791 0.90430 1.12224 1.71422 1.27183 1.07599 0.94881 1.06791 1.16852 0.86356 0.88930 1.09928 1.42639 1.05081 1.07405 1.76399 1.15806 0.79585 0.85653 0.78674 1.90677 1.73734 1.22400 1.57666 1.47481 1.09310 1.03206 1.74313 1.21629 0.98666 0.85516 1.00367 1.19300 0.70702 0.98557 0.97461 1.21488 0.92341 1.50186 0.92662 0.92387 1.24926 0.97035 0.95000 0.97067 1.69942 1.05456 1.49548 1.28378 0.86435 0.79124 0.77672 0.84144 1.19847 1.20838 1.20965 0.92190 0.92203 0.88166 0.75844 0.75449 0.93404 0.93086 0.90092 0.93525 0.94572 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.47 101.05 1.06 1.41 16 2 O -0.30 -3.77 10.13 -19.68 -0.20 -3.97 16 3 C 0.30 4.36 7.44 -18.04 -0.13 4.23 16 4 N -0.53 -7.52 11.13 29.07 0.32 -7.20 16 5 S 0.28 3.66 23.71 -107.50 -2.55 1.12 16 6 C -0.21 -3.49 10.09 29.71 0.30 -3.19 16 7 C 0.09 1.50 6.62 -84.52 -0.56 0.94 16 8 N -0.67 -11.25 5.34 -14.87 -0.08 -11.33 16 9 C 0.70 14.73 8.24 -86.92 -0.72 14.01 16 10 O -0.57 -13.71 12.75 5.27 0.07 -13.64 16 11 N -0.61 -12.72 2.86 -188.74 -0.54 -13.26 16 12 C 0.08 1.27 10.26 59.85 0.61 1.88 16 13 C 0.26 6.61 5.16 -5.19 -0.03 6.59 16 14 C -0.53 -14.70 9.38 -34.44 -0.32 -15.02 16 15 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 16 C 0.06 1.74 5.46 -17.81 -0.10 1.64 16 17 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 18 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.23 4.11 5.52 -52.49 -0.29 3.82 16 26 H 0.41 5.80 6.11 -40.82 -0.25 5.55 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.64 6.28 -51.93 -0.33 0.32 16 29 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 30 H 0.05 1.33 7.42 -51.93 -0.39 0.95 16 31 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 293.34 15.07 4.42 4.42 Total: -1.00 -32.17 293.34 -6.05 -38.22 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -3.32 Total: 1.95 kcal Atomic # 6 Polarization: 12.37 SS G_CDS: 0.11 Total: 12.49 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: 0.44 Total: -57.18 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.13 Total: -17.61 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 3.66 SS G_CDS: -2.55 Total: 1.12 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.17 -6.05 -38.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674175616.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.169 kcal (2) G-P(sol) polarization free energy of solvation -32.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds