Wall clock time and date at job start Mon Mar 30 2020 00:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35982 * 117.00182 * 2 1 4 4 N 1.30314 * 121.66618 * 0.25129 * 3 2 1 5 5 S 1.69561 * 107.27824 * 180.24408 * 4 3 2 6 6 C 1.72020 * 95.85605 * 359.72816 * 5 4 3 7 7 C 1.35373 * 105.61394 * 359.97438 * 6 5 4 8 8 N 1.40961 * 122.71046 * 180.02562 * 7 6 5 9 9 C 1.34778 * 119.99676 * 6.06661 * 8 7 6 10 10 O 1.21607 * 119.99970 * 354.70411 * 9 8 7 11 11 N 1.34770 * 119.99730 * 174.71128 * 9 8 7 12 12 C 1.46502 * 120.00181 * 359.97438 * 11 9 8 13 13 C 1.46506 * 119.99915 * 179.72761 * 11 9 8 14 14 C 1.50699 * 109.46427 * 270.26891 * 13 11 9 15 15 H 1.07995 * 120.00716 * 0.02562 * 14 13 11 16 16 C 1.37883 * 119.99813 * 179.97438 * 14 13 11 17 17 N 1.31523 * 119.99696 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00232 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.46895 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46741 * 120.00382 * 18 16 14 21 21 H 1.48493 * 109.47079 * 240.00082 * 18 16 14 22 22 H 1.08997 * 109.47268 * 300.00254 * 1 2 3 23 23 H 1.09002 * 109.46876 * 59.99742 * 1 2 3 24 24 H 1.08999 * 109.47396 * 179.97438 * 1 2 3 25 25 H 1.07993 * 127.19143 * 180.02562 * 6 5 4 26 26 H 0.96993 * 119.99688 * 186.06920 * 8 7 6 27 27 H 1.09002 * 109.47150 * 269.73056 * 12 11 9 28 28 H 1.08996 * 109.47102 * 29.72639 * 12 11 9 29 29 H 1.09000 * 109.47369 * 149.72844 * 12 11 9 30 30 H 1.08996 * 109.47159 * 30.26455 * 13 11 9 31 31 H 1.08996 * 109.47137 * 150.27158 * 13 11 9 32 32 H 0.96996 * 119.99360 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 7 1.3688 2.3247 0.0049 5 16 2.4898 3.5968 -0.0039 6 6 3.8897 2.5971 -0.0061 7 6 3.4285 1.3243 0.0006 8 7 4.2841 0.2041 0.0017 9 6 5.6160 0.3736 0.1193 10 8 6.0880 1.4943 0.1275 11 7 6.4248 -0.6990 0.2276 12 6 5.8562 -2.0492 0.2181 13 6 7.8731 -0.5151 0.3494 14 6 8.4939 -0.4938 -1.0236 15 1 7.8719 -0.6057 -1.8993 16 6 9.8560 -0.3305 -1.1619 17 7 10.6135 -0.1937 -0.0954 18 14 10.6257 -0.3049 -2.8637 19 1 9.5656 -0.4780 -3.8890 20 1 11.3125 0.9944 -3.0768 21 1 11.6108 -1.4101 -2.9781 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 4.9209 2.9178 -0.0109 26 1 3.9143 -0.6886 -0.0823 27 1 5.6255 -2.3535 1.2390 28 1 4.9434 -2.0548 -0.3776 29 1 6.5764 -2.7438 -0.2142 30 1 8.0782 0.4283 0.8555 31 1 8.2964 -1.3368 0.9269 32 1 11.5717 -0.0792 -0.1927 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674175616.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:10 Heat of formation + Delta-G solvation = -25.339238 kcal Electronic energy + Delta-G solvation = -18539.369090 eV Core-core repulsion = 15434.490000 eV Total energy + Delta-G solvation = -3104.879090 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.99211 -40.69525 -38.02349 -36.65475 -35.54556 -34.55523 -31.28936 -29.59404 -28.86752 -27.41338 -25.65027 -24.45939 -21.87364 -20.95497 -20.32230 -18.69639 -18.61436 -18.17428 -17.39090 -17.22589 -16.53212 -16.47874 -15.94510 -15.50789 -14.89881 -14.81564 -14.51523 -14.29951 -13.90497 -13.50550 -13.15619 -12.95978 -12.82012 -12.54329 -12.33855 -12.25045 -12.14131 -12.03459 -11.97963 -11.67000 -10.94226 -10.62176 -10.26776 -9.53534 -8.78162 -8.19841 -6.34478 -0.35180 0.34484 0.63199 1.21595 1.38691 1.41054 1.52151 1.67540 2.03726 2.23668 2.41495 2.97471 3.10217 3.65573 4.17991 4.26366 4.34011 4.39807 4.64039 4.70637 4.73458 4.82507 4.94946 4.99972 5.21899 5.31598 5.55909 5.76037 5.96008 6.00508 6.07211 6.74020 6.96002 7.31660 7.53588 8.86599 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.027632 B = 0.004645 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.058586 B = 6026.207379 C = 6522.311904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.303 6.303 3 C 0.301 3.699 4 N -0.531 5.531 5 S 0.335 5.665 6 C -0.235 4.235 7 C 0.073 3.927 8 N -0.648 5.648 9 C 0.696 3.304 10 O -0.609 6.609 11 N -0.616 5.616 12 C 0.077 3.923 13 C 0.275 3.725 14 C -0.542 4.542 15 H 0.052 0.948 16 C 0.011 3.989 17 N -0.927 5.927 18 Si 0.966 3.034 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.270 1.270 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.133 0.867 25 H 0.202 0.798 26 H 0.422 0.578 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.005 0.995 31 H 0.032 0.968 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.887 -1.172 0.313 19.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.209 6.209 3 C 0.082 3.918 4 N -0.371 5.371 5 S 0.482 5.518 6 C -0.386 4.386 7 C -0.040 4.040 8 N -0.299 5.299 9 C 0.398 3.602 10 O -0.489 6.489 11 N -0.350 5.350 12 C -0.065 4.065 13 C 0.154 3.846 14 C -0.581 4.581 15 H 0.070 0.930 16 C -0.188 4.188 17 N -0.566 5.566 18 Si 0.791 3.209 19 H -0.194 1.194 20 H -0.208 1.208 21 H -0.195 1.195 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.151 0.849 25 H 0.218 0.782 26 H 0.262 0.738 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.023 0.977 31 H 0.050 0.950 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -20.621 0.835 0.414 20.642 hybrid contribution 1.579 -1.737 -0.687 2.446 sum -19.042 -0.902 -0.273 19.066 Atomic orbital electron populations 1.23256 0.74645 1.05639 1.02583 1.86220 1.24971 1.21453 1.88261 1.19489 0.87932 0.86600 0.97738 1.76358 1.26966 1.01300 1.32434 1.83559 0.87890 1.10559 1.69825 1.27056 1.08095 0.96266 1.07186 1.17073 0.87214 0.88604 1.11066 1.42269 1.03566 1.08467 1.75637 1.15944 0.80773 0.84997 0.78524 1.90670 1.74963 1.24021 1.59289 1.47348 1.07768 1.05486 1.74440 1.21919 0.99521 0.82428 1.02680 1.18768 0.73649 0.96170 0.96051 1.21731 0.92797 1.50265 0.93270 0.93010 1.25786 0.97572 0.94454 1.00988 1.70048 1.05886 1.50176 1.30525 0.85394 0.78310 0.77896 0.79336 1.19409 1.20790 1.19484 0.92087 0.92117 0.84876 0.78152 0.73813 0.90845 0.89960 0.90378 0.97673 0.95006 0.92382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.47 113.37 1.19 1.68 16 2 O -0.30 -6.88 10.13 -93.35 -0.95 -7.83 16 3 C 0.30 8.30 7.44 85.02 0.63 8.94 16 4 N -0.53 -14.12 11.13 -175.60 -1.95 -16.07 16 5 S 0.33 8.45 23.71 -56.49 -1.34 7.12 16 6 C -0.24 -7.73 10.09 67.16 0.68 -7.05 16 7 C 0.07 2.34 6.62 37.11 0.25 2.58 16 8 N -0.65 -21.47 5.34 -319.23 -1.70 -23.18 16 9 C 0.70 29.66 8.24 179.06 1.48 31.13 16 10 O -0.61 -30.68 12.75 -4.05 -0.05 -30.73 16 11 N -0.62 -25.95 2.86 -869.29 -2.48 -28.43 16 12 C 0.08 2.24 10.26 127.77 1.31 3.55 16 13 C 0.27 14.50 5.16 85.63 0.44 14.94 16 14 C -0.54 -30.69 9.38 25.60 0.24 -30.45 16 15 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 16 C 0.01 0.63 5.46 84.65 0.46 1.10 16 17 N -0.93 -55.02 13.29 21.45 0.28 -54.73 16 18 Si 0.97 44.43 29.54 68.60 2.03 46.46 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 20 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 22 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.20 7.74 5.52 -2.91 -0.02 7.72 16 26 H 0.42 11.19 6.11 -92.71 -0.57 10.62 16 27 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.08 1.86 6.28 -2.39 -0.01 1.85 16 29 H 0.08 2.33 8.07 -2.39 -0.02 2.31 16 30 H 0.01 0.31 7.42 -2.39 -0.02 0.29 16 31 H 0.03 1.68 8.07 -2.39 -0.02 1.66 16 32 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -70.62 293.34 1.10 -69.52 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: 0.60 Total: 11.47 kcal Atomic # 6 Polarization: 19.73 SS G_CDS: 6.67 Total: 26.41 kcal Atomic # 7 Polarization: -116.55 SS G_CDS: -5.86 Total: -122.41 kcal Atomic # 8 Polarization: -37.56 SS G_CDS: -1.00 Total: -38.56 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Atomic # 16 Polarization: 8.45 SS G_CDS: -1.34 Total: 7.12 kcal Total: -70.62 1.10 -69.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674175616.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.181 kcal (2) G-P(sol) polarization free energy of solvation -70.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds