Wall clock time and date at job start Mon Mar 30 2020 01:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 N 1.46505 * 109.47578 * 174.99814 * 4 2 1 6 6 C 1.34776 * 120.00162 * 180.02562 * 5 4 2 7 7 O 1.21716 * 120.00108 * 359.97438 * 6 5 4 8 8 C 1.46547 * 119.99863 * 180.02562 * 6 5 4 9 9 C 1.37936 * 126.23500 * 180.02562 * 8 6 5 10 10 C 1.39737 * 107.12494 * 179.97438 * 9 8 6 11 11 C 1.35655 * 107.88925 * 359.97438 * 10 9 8 12 12 Cl 1.73600 * 125.58064 * 180.02562 * 11 10 9 13 13 N 1.35581 * 108.84633 * 359.76868 * 11 10 9 14 14 H 0.97001 * 125.69582 * 180.23085 * 13 11 10 15 15 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 16 16 C 1.36936 * 119.99838 * 84.99783 * 15 2 1 17 17 H 1.07999 * 120.00085 * 359.97438 * 16 15 2 18 18 C 1.38815 * 119.99824 * 180.02562 * 16 15 2 19 19 N 1.31622 * 119.99803 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99851 * 359.97438 * 18 16 15 21 21 H 1.48494 * 109.47209 * 90.00616 * 20 18 16 22 22 H 1.48506 * 109.47027 * 210.00119 * 20 18 16 23 23 H 1.48501 * 109.47427 * 329.99828 * 20 18 16 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 1.09001 * 109.47359 * 295.00205 * 4 2 1 28 28 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 29 29 H 0.96998 * 119.99536 * 0.02562 * 5 4 2 30 30 H 1.08006 * 126.42996 * 359.95477 * 9 8 6 31 31 H 1.07999 * 126.05816 * 180.02562 * 10 9 8 32 32 H 0.96992 * 120.00062 * 265.00053 * 15 2 1 33 33 H 0.97000 * 119.99658 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 7 3.5001 -0.8264 1.1905 6 6 4.1731 -1.4292 2.1905 7 8 3.5679 -1.8859 3.1427 8 6 5.6337 -1.5339 2.1321 9 6 6.4475 -2.1213 3.0782 10 6 7.7629 -1.9986 2.6228 11 6 7.7325 -1.3523 1.4305 12 17 9.1165 -0.9584 0.4594 13 7 6.4437 -1.0693 1.1185 14 1 6.1424 -0.6134 0.3170 15 7 2.0184 -0.6906 -1.1962 16 6 2.1491 -0.0073 -2.3758 17 1 1.8918 1.0404 -2.4243 18 6 2.6114 -0.6618 -3.5093 19 7 2.7375 -0.0050 -4.6430 20 14 3.0557 -2.4742 -3.4255 21 1 1.8584 -3.2927 -3.7444 22 1 4.1308 -2.7662 -4.4075 23 1 3.5313 -2.8046 -2.0580 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.7517 -0.1584 2.1369 28 1 1.6055 -1.7198 1.2950 29 1 3.9825 -0.4622 0.4318 30 1 6.1280 -2.5881 3.9983 31 1 8.6471 -2.3558 3.1298 32 1 2.2491 -1.6316 -1.1527 33 1 3.0602 -0.4624 -5.4351 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690618642.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:02 Heat of formation + Delta-G solvation = 10.252751 kcal Electronic energy + Delta-G solvation = -18316.976763 eV Core-core repulsion = 15211.597351 eV Total energy + Delta-G solvation = -3105.379412 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.45429 -39.10556 -36.90340 -36.56991 -33.84549 -32.11388 -31.31523 -29.74748 -29.09228 -26.02468 -23.53907 -22.46087 -20.83744 -20.40387 -20.25507 -19.00964 -17.76145 -16.23324 -15.80836 -15.64852 -15.07668 -14.30592 -14.28057 -14.13643 -13.75241 -13.17300 -13.07525 -12.86335 -12.65848 -12.33356 -12.23679 -11.85402 -11.73184 -11.45772 -11.05868 -10.92366 -10.53323 -10.19622 -10.05809 -9.74139 -9.32610 -9.12990 -8.99966 -8.31017 -7.47234 -5.92545 -3.30186 1.23347 1.44473 2.39184 3.05644 3.23360 3.25137 3.28985 3.35413 3.36389 4.43786 4.81662 5.00783 5.07151 5.11683 5.23884 5.36177 5.66837 5.68675 5.85442 5.89934 5.98991 6.08351 6.29837 6.31241 6.49104 6.57435 6.60243 6.85367 6.94511 7.60145 7.82647 8.21021 8.26017 9.03309 9.75498 9.94528 11.25139 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.014568 B = 0.006190 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.516533 B = 4522.072855 C = 5895.347198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.164 3.836 3 H 0.063 0.937 4 C 0.112 3.888 5 N -0.715 5.715 6 C 0.585 3.415 7 O -0.535 6.535 8 C -0.029 4.029 9 C -0.104 4.104 10 C -0.180 4.180 11 C 0.086 3.914 12 Cl -0.016 7.016 13 N -0.529 5.529 14 H 0.425 0.575 15 N -0.749 5.749 16 C -0.250 4.250 17 H 0.092 0.908 18 C 0.009 3.991 19 N -0.929 5.929 20 Si 0.881 3.119 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.279 1.279 24 H 0.044 0.956 25 H 0.049 0.951 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.404 0.596 30 H 0.157 0.843 31 H 0.154 0.846 32 H 0.362 0.638 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.696 -1.851 13.418 16.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.054 3.946 3 H 0.081 0.919 4 C -0.012 4.012 5 N -0.366 5.366 6 C 0.372 3.628 7 O -0.412 6.412 8 C -0.143 4.143 9 C -0.130 4.130 10 C -0.206 4.206 11 C -0.057 4.057 12 Cl 0.013 6.987 13 N -0.129 5.129 14 H 0.264 0.736 15 N -0.393 5.393 16 C -0.380 4.380 17 H 0.110 0.890 18 C -0.187 4.187 19 N -0.576 5.576 20 Si 0.711 3.289 21 H -0.209 1.209 22 H -0.217 1.217 23 H -0.205 1.205 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.240 0.760 30 H 0.175 0.825 31 H 0.171 0.829 32 H 0.195 0.805 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.270 -1.866 13.671 16.086 hybrid contribution 0.552 -0.877 -1.204 1.588 sum 8.822 -2.743 12.467 15.517 Atomic orbital electron populations 1.22322 0.97518 1.01416 1.01045 1.20503 0.93085 0.96003 0.84983 0.91937 1.21818 0.78588 1.01536 0.99260 1.45937 1.08857 1.58809 1.23028 1.16952 0.84434 0.78512 0.82946 1.90833 1.68136 1.48810 1.33431 1.20598 0.90914 1.10268 0.92489 1.21259 0.90951 1.01323 0.99487 1.20644 0.98486 1.06422 0.95021 1.21055 0.81152 1.07583 0.95886 1.98410 1.36454 1.93183 1.70700 1.42139 1.04912 1.46086 1.19717 0.73580 1.42863 1.79727 1.09584 1.07158 1.19052 1.37690 0.95652 0.85586 0.89020 1.24670 1.01262 0.97267 0.95520 1.69694 1.52073 1.35568 1.00237 0.86634 0.78356 0.86943 0.76958 1.20934 1.21683 1.20505 0.93724 0.93216 0.91763 0.90938 0.91453 0.76043 0.82516 0.82870 0.80518 0.92902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 9.49 37.16 0.35 -2.22 16 2 C 0.16 2.79 3.05 -67.93 -0.21 2.59 16 3 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 4 C 0.11 1.71 5.23 -4.04 -0.02 1.69 16 5 N -0.72 -10.88 5.38 -61.66 -0.33 -11.22 16 6 C 0.59 9.23 7.78 -12.91 -0.10 9.13 16 7 O -0.53 -9.76 16.88 5.17 0.09 -9.68 16 8 C -0.03 -0.40 7.06 -81.93 -0.58 -0.98 16 9 C -0.10 -1.29 10.65 -39.13 -0.42 -1.71 16 10 C -0.18 -1.99 10.78 -39.95 -0.43 -2.42 16 11 C 0.09 1.01 7.74 -16.82 -0.13 0.88 16 12 Cl -0.02 -0.17 29.30 -51.86 -1.52 -1.69 16 13 N -0.53 -6.54 6.00 -6.54 -0.04 -6.58 16 14 H 0.42 4.85 8.19 -40.82 -0.33 4.52 16 15 N -0.75 -15.85 4.37 -53.43 -0.23 -16.09 16 16 C -0.25 -6.44 10.41 -15.06 -0.16 -6.60 16 17 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 18 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 19 N -0.93 -27.69 13.97 55.49 0.78 -26.91 16 20 Si 0.88 21.06 27.73 -169.99 -4.71 16.35 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.28 -6.25 6.52 56.52 0.37 -5.89 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.40 6.04 7.27 -40.82 -0.30 5.74 16 30 H 0.16 1.76 8.06 -52.48 -0.42 1.34 16 31 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.36 7.78 5.66 -40.82 -0.23 7.55 16 33 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 304.46 15.07 4.59 4.59 Total: -1.00 -30.36 304.46 -7.00 -37.36 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -3.83 Total: 13.33 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -1.78 Total: 0.53 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: 0.17 Total: -60.79 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.71 Total: 16.35 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -1.52 Total: -1.69 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.36 -7.00 -37.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690618642.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.616 kcal (2) G-P(sol) polarization free energy of solvation -30.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds