Wall clock time and date at job start Mon Mar 30 2020 01:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36936 * 120.00049 * 2 1 4 4 H 1.07991 * 120.00330 * 200.36223 * 3 2 1 5 5 C 1.38817 * 119.99836 * 20.36433 * 3 2 1 6 6 N 1.31622 * 119.99744 * 14.98381 * 5 3 2 7 7 Si 1.86793 * 119.99938 * 194.98664 * 5 3 2 8 8 H 1.48498 * 109.47107 * 85.00097 * 7 5 3 9 9 H 1.48501 * 109.47352 * 205.00267 * 7 5 3 10 10 H 1.48501 * 109.47212 * 325.00404 * 7 5 3 11 11 C 1.46498 * 120.00015 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.47013 * 270.00276 * 11 2 1 13 13 N 1.46498 * 109.46856 * 180.02562 * 12 11 2 14 14 C 1.34781 * 119.99882 * 179.97438 * 13 12 11 15 15 O 1.21694 * 119.99733 * 359.97438 * 14 13 12 16 16 C 1.46673 * 119.99937 * 179.97438 * 14 13 12 17 17 C 1.37893 * 126.21918 * 179.68702 * 16 14 13 18 18 C 1.39894 * 107.09245 * 179.88275 * 17 16 14 19 19 Cl 1.73600 * 126.07185 * 180.14497 * 18 17 16 20 20 C 1.35514 * 107.84756 * 0.38272 * 18 17 16 21 21 N 1.35625 * 108.85847 * 359.76414 * 20 18 17 22 22 H 0.96993 * 125.67771 * 180.02562 * 21 20 18 23 23 H 1.09001 * 109.47317 * 275.09152 * 1 2 3 24 24 H 1.08996 * 109.47215 * 35.09737 * 1 2 3 25 25 H 1.09002 * 109.46773 * 155.09382 * 1 2 3 26 26 H 0.97001 * 119.99430 * 180.02562 * 6 5 3 27 27 H 1.08996 * 109.47070 * 149.99854 * 11 2 1 28 28 H 1.09003 * 109.47432 * 30.00221 * 11 2 1 29 29 H 1.08996 * 109.47547 * 59.99871 * 12 11 2 30 30 H 1.09003 * 109.46745 * 299.99475 * 12 11 2 31 31 H 0.97003 * 120.00451 * 359.97438 * 13 12 11 32 32 H 1.07995 * 126.45718 * 0.02562 * 17 16 14 33 33 H 1.08011 * 125.57072 * 179.77730 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1790 1.2152 -0.3254 5 6 1.5207 2.3505 0.4184 6 7 0.3875 2.2835 1.0846 7 14 2.2824 4.0126 0.0358 8 1 1.8682 4.4460 -1.3228 9 1 1.8223 5.0099 1.0352 10 1 3.7623 3.9033 0.0907 11 6 2.1975 -1.2687 -0.0006 12 6 2.4524 -1.7110 1.4418 13 7 3.1855 -2.9794 1.4412 14 6 3.5229 -3.5633 2.6081 15 8 3.2191 -3.0365 3.6622 16 6 4.2563 -4.8335 2.6075 17 6 4.6695 -5.5363 3.7197 18 6 5.3256 -6.6834 3.2608 19 17 6.0394 -7.9178 4.2510 20 6 5.3096 -6.6571 1.9060 21 7 4.6626 -5.5376 1.4969 22 1 4.5109 -5.2768 0.5750 23 1 -0.3634 0.0912 1.0236 24 1 -0.3633 0.8408 -0.5908 25 1 -0.3633 -0.9321 -0.4328 26 1 -0.0522 3.0973 1.3765 27 1 3.1499 -1.1381 -0.5143 28 1 1.6085 -2.0282 -0.5148 29 1 1.5001 -1.8416 1.9555 30 1 3.0416 -0.9516 1.9559 31 1 3.4280 -3.3991 0.6009 32 1 4.5136 -5.2554 4.7507 33 1 5.7414 -7.4056 1.2579 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690923974.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:33 Heat of formation + Delta-G solvation = 25.518919 kcal Electronic energy + Delta-G solvation = -17783.211330 eV Core-core repulsion = 14678.493909 eV Total energy + Delta-G solvation = -3104.717421 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.55787 -38.96207 -36.57970 -36.12428 -34.29852 -31.54713 -31.10318 -29.79641 -27.88705 -25.92309 -23.92970 -22.33612 -20.87328 -20.71582 -20.32914 -18.92300 -16.81637 -16.00024 -15.56719 -15.46165 -14.77168 -14.67017 -14.47669 -13.77269 -13.64541 -13.54527 -13.15520 -13.08886 -12.45783 -12.36713 -12.03393 -11.29550 -11.04322 -10.95208 -10.89844 -10.64774 -10.37635 -10.06913 -10.04607 -9.85994 -9.13311 -8.86283 -8.61079 -8.45512 -6.90917 -5.79550 -3.25220 1.24728 1.97101 2.23682 2.87074 3.30815 3.37092 3.38107 3.42693 3.43844 4.45869 4.64975 4.76575 4.96231 5.33629 5.38849 5.54292 5.67912 5.77340 5.85678 6.16781 6.19977 6.38420 6.52571 6.61839 6.65153 6.85449 6.95007 7.29866 7.61611 7.66035 7.75256 8.27441 8.32178 9.14883 9.77495 10.24478 11.25529 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.043422 B = 0.003056 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.679569 B = 9158.797632 C = 9260.664454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.595 5.595 3 C -0.264 4.264 4 H 0.071 0.929 5 C 0.004 3.996 6 N -0.903 5.903 7 Si 0.908 3.092 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.144 3.856 12 C 0.094 3.906 13 N -0.722 5.722 14 C 0.580 3.420 15 O -0.523 6.523 16 C -0.029 4.029 17 C -0.101 4.101 18 C -0.126 4.126 19 Cl -0.051 7.051 20 C 0.035 3.965 21 N -0.530 5.530 22 H 0.424 0.576 23 H 0.031 0.969 24 H 0.046 0.954 25 H -0.001 1.001 26 H 0.254 0.746 27 H 0.048 0.952 28 H 0.042 0.958 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.388 0.612 32 H 0.157 0.843 33 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.891 -19.263 -1.368 21.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.318 5.318 3 C -0.393 4.393 4 H 0.089 0.911 5 C -0.195 4.195 6 N -0.547 5.547 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.216 1.216 10 H -0.205 1.205 11 C 0.016 3.984 12 C -0.032 4.032 13 N -0.373 5.373 14 C 0.365 3.635 15 O -0.399 6.399 16 C -0.143 4.143 17 C -0.127 4.127 18 C -0.160 4.160 19 Cl -0.022 7.022 20 C -0.102 4.102 21 N -0.128 5.128 22 H 0.263 0.737 23 H 0.050 0.950 24 H 0.065 0.935 25 H 0.018 0.982 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.221 0.779 32 H 0.175 0.825 33 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 8.512 -18.677 -0.613 20.535 hybrid contribution 0.507 0.664 -0.768 1.135 sum 9.020 -18.013 -1.381 20.192 Atomic orbital electron populations 1.20864 0.82076 0.95718 0.99739 1.43952 1.02094 1.00307 1.85402 1.19212 0.97209 0.84767 1.38123 0.91107 1.25023 0.97812 0.98599 0.98079 1.70088 1.18700 1.27101 1.38858 0.86230 0.78684 0.83733 0.77613 1.21376 1.21646 1.20485 1.20990 0.96373 0.89028 0.92052 1.22646 0.95818 0.82246 1.02452 1.46106 1.58444 1.25703 1.07056 1.17026 0.79176 0.82548 0.84762 1.90883 1.54455 1.63572 1.30982 1.20641 1.09837 0.97449 0.86398 1.21185 0.99759 0.92969 0.98800 1.19956 1.09525 0.95461 0.91035 1.98325 1.82497 1.52220 1.69207 1.21697 1.02049 0.91998 0.94481 1.41934 1.43656 1.18407 1.08759 0.73734 0.95018 0.93526 0.98222 0.93539 0.93333 0.93994 0.91790 0.90926 0.77924 0.82525 0.80314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.86 9.02 59.85 0.54 4.40 16 2 N -0.60 -14.49 2.93 -181.12 -0.53 -15.02 16 3 C -0.26 -7.09 9.68 -15.06 -0.15 -7.23 16 4 H 0.07 1.85 7.86 -52.49 -0.41 1.44 16 5 C 0.00 0.11 5.06 -17.43 -0.09 0.02 16 6 N -0.90 -26.16 10.67 55.49 0.59 -25.56 16 7 Si 0.91 21.65 29.58 -169.99 -5.03 16.62 16 8 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 9 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 C 0.14 2.71 5.82 -4.04 -0.02 2.68 16 12 C 0.09 1.75 6.00 -4.04 -0.02 1.72 16 13 N -0.72 -10.22 5.55 -61.62 -0.34 -10.56 16 14 C 0.58 9.11 7.79 -12.85 -0.10 9.01 16 15 O -0.52 -10.64 16.88 5.19 0.09 -10.55 16 16 C -0.03 -0.36 7.05 -81.98 -0.58 -0.94 16 17 C -0.10 -1.25 10.65 -39.09 -0.42 -1.66 16 18 C -0.13 -1.31 6.66 -39.93 -0.27 -1.57 16 19 Cl -0.05 -0.49 29.30 -51.86 -1.52 -2.01 16 20 C 0.04 0.27 11.87 -16.85 -0.20 0.07 16 21 N -0.53 -4.28 6.00 -9.35 -0.06 -4.34 16 22 H 0.42 2.04 8.19 -40.82 -0.33 1.70 16 23 H 0.03 0.83 7.40 -51.93 -0.38 0.45 16 24 H 0.05 1.20 7.21 -51.93 -0.37 0.83 16 25 H 0.00 -0.02 7.83 -51.93 -0.41 -0.42 16 26 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.05 0.86 8.03 -51.93 -0.42 0.44 16 28 H 0.04 0.69 7.86 -51.93 -0.41 0.28 16 29 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 31 H 0.39 3.90 7.60 -40.82 -0.31 3.59 16 32 H 0.16 1.98 8.06 -52.49 -0.42 1.56 16 33 H 0.18 0.77 8.06 -52.48 -0.42 0.35 16 LS Contribution 304.52 15.07 4.59 4.59 Total: -1.00 -32.97 304.52 -7.38 -40.35 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -3.87 Total: -0.02 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: -1.30 Total: 6.50 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: -0.34 Total: -55.48 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.52 Total: -2.01 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.97 -7.38 -40.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690923974.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.868 kcal (2) G-P(sol) polarization free energy of solvation -32.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds