Wall clock time and date at job start Mon Mar 30 2020 01:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36936 * 120.00049 * 2 1 4 4 H 1.07991 * 120.00330 * 200.36223 * 3 2 1 5 5 C 1.38817 * 119.99836 * 20.36433 * 3 2 1 6 6 N 1.31622 * 119.99744 * 14.98381 * 5 3 2 7 7 Si 1.86793 * 119.99938 * 194.98664 * 5 3 2 8 8 H 1.48498 * 109.47107 * 85.00097 * 7 5 3 9 9 H 1.48501 * 109.47352 * 205.00267 * 7 5 3 10 10 H 1.48501 * 109.47212 * 325.00404 * 7 5 3 11 11 C 1.46498 * 120.00015 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.47013 * 270.00276 * 11 2 1 13 13 N 1.46498 * 109.46856 * 180.02562 * 12 11 2 14 14 C 1.34781 * 119.99882 * 179.97438 * 13 12 11 15 15 O 1.21694 * 119.99733 * 359.97438 * 14 13 12 16 16 C 1.46673 * 119.99937 * 179.97438 * 14 13 12 17 17 C 1.37893 * 126.21918 * 179.68702 * 16 14 13 18 18 C 1.39894 * 107.09245 * 179.88275 * 17 16 14 19 19 Cl 1.73600 * 126.07185 * 180.14497 * 18 17 16 20 20 C 1.35514 * 107.84756 * 0.38272 * 18 17 16 21 21 N 1.35625 * 108.85847 * 359.76414 * 20 18 17 22 22 H 0.96993 * 125.67771 * 180.02562 * 21 20 18 23 23 H 1.09001 * 109.47317 * 275.09152 * 1 2 3 24 24 H 1.08996 * 109.47215 * 35.09737 * 1 2 3 25 25 H 1.09002 * 109.46773 * 155.09382 * 1 2 3 26 26 H 0.97001 * 119.99430 * 180.02562 * 6 5 3 27 27 H 1.08996 * 109.47070 * 149.99854 * 11 2 1 28 28 H 1.09003 * 109.47432 * 30.00221 * 11 2 1 29 29 H 1.08996 * 109.47547 * 59.99871 * 12 11 2 30 30 H 1.09003 * 109.46745 * 299.99475 * 12 11 2 31 31 H 0.97003 * 120.00451 * 359.97438 * 13 12 11 32 32 H 1.07995 * 126.45718 * 0.02562 * 17 16 14 33 33 H 1.08011 * 125.57072 * 179.77730 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1790 1.2152 -0.3254 5 6 1.5207 2.3505 0.4184 6 7 0.3875 2.2835 1.0846 7 14 2.2824 4.0126 0.0358 8 1 1.8682 4.4460 -1.3228 9 1 1.8223 5.0099 1.0352 10 1 3.7623 3.9033 0.0907 11 6 2.1975 -1.2687 -0.0006 12 6 2.4524 -1.7110 1.4418 13 7 3.1855 -2.9794 1.4412 14 6 3.5229 -3.5633 2.6081 15 8 3.2191 -3.0365 3.6622 16 6 4.2563 -4.8335 2.6075 17 6 4.6695 -5.5363 3.7197 18 6 5.3256 -6.6834 3.2608 19 17 6.0394 -7.9178 4.2510 20 6 5.3096 -6.6571 1.9060 21 7 4.6626 -5.5376 1.4969 22 1 4.5109 -5.2768 0.5750 23 1 -0.3634 0.0912 1.0236 24 1 -0.3633 0.8408 -0.5908 25 1 -0.3633 -0.9321 -0.4328 26 1 -0.0522 3.0973 1.3765 27 1 3.1499 -1.1381 -0.5143 28 1 1.6085 -2.0282 -0.5148 29 1 1.5001 -1.8416 1.9555 30 1 3.0416 -0.9516 1.9559 31 1 3.4280 -3.3991 0.6009 32 1 4.5136 -5.2554 4.7507 33 1 5.7414 -7.4056 1.2579 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690923974.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:33 Heat of formation + Delta-G solvation = 1.805708 kcal Electronic energy + Delta-G solvation = -17784.239612 eV Core-core repulsion = 14678.493909 eV Total energy + Delta-G solvation = -3105.745703 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.41259 -40.23815 -37.87237 -37.32615 -35.85112 -33.36260 -32.00336 -30.97243 -29.28096 -27.93051 -25.46048 -23.59606 -22.47519 -21.66385 -21.26345 -20.04840 -18.77607 -17.23314 -16.76741 -16.72130 -16.64844 -15.72294 -15.54748 -15.27896 -15.00675 -14.84513 -14.38427 -14.17683 -14.12582 -13.90052 -13.14888 -12.81038 -12.79278 -12.67098 -12.47952 -12.11417 -12.01528 -11.81176 -11.79495 -11.35441 -10.66816 -10.27462 -9.93660 -9.28544 -8.90672 -7.86367 -5.33985 0.30183 1.23812 1.43734 1.47152 1.47697 1.56295 1.92010 2.22293 2.27729 2.52001 3.28525 3.67880 3.86838 4.08319 4.18110 4.21436 4.28128 4.55646 4.64053 4.82844 4.86435 5.03252 5.08101 5.30346 5.32614 5.34628 5.53152 5.61843 5.71262 6.28380 6.31556 6.50988 7.09117 7.11884 7.82363 8.23644 9.17309 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.043422 B = 0.003056 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.679569 B = 9158.797632 C = 9260.664454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.172 3.828 2 N -0.614 5.614 3 C -0.267 4.267 4 H 0.078 0.922 5 C -0.056 4.056 6 N -0.938 5.938 7 Si 0.970 3.030 8 H -0.281 1.281 9 H -0.299 1.299 10 H -0.268 1.268 11 C 0.147 3.853 12 C 0.114 3.886 13 N -0.704 5.704 14 C 0.580 3.420 15 O -0.581 6.581 16 C -0.052 4.052 17 C -0.112 4.112 18 C -0.151 4.151 19 Cl -0.048 7.048 20 C 0.076 3.924 21 N -0.510 5.510 22 H 0.442 0.558 23 H -0.001 1.001 24 H 0.020 0.980 25 H 0.039 0.961 26 H 0.248 0.752 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.037 0.963 30 H 0.033 0.967 31 H 0.413 0.587 32 H 0.140 0.860 33 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.663 -21.502 -3.719 24.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.337 5.337 3 C -0.397 4.397 4 H 0.096 0.904 5 C -0.251 4.251 6 N -0.585 5.585 7 Si 0.798 3.202 8 H -0.208 1.208 9 H -0.226 1.226 10 H -0.193 1.193 11 C 0.020 3.980 12 C -0.012 4.012 13 N -0.356 5.356 14 C 0.368 3.632 15 O -0.461 6.461 16 C -0.166 4.166 17 C -0.140 4.140 18 C -0.184 4.184 19 Cl -0.019 7.019 20 C -0.063 4.063 21 N -0.108 5.108 22 H 0.285 0.715 23 H 0.017 0.983 24 H 0.039 0.961 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.250 0.750 32 H 0.158 0.842 33 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 10.319 -20.960 -3.042 23.560 hybrid contribution 0.034 1.174 -0.042 1.176 sum 10.353 -19.786 -3.084 22.543 Atomic orbital electron populations 1.20623 0.82419 0.96579 0.97640 1.44203 1.02384 1.01634 1.85429 1.19600 0.97479 0.85966 1.36695 0.90400 1.25816 0.98589 1.02009 0.98664 1.70265 1.20280 1.27305 1.40611 0.85239 0.78329 0.79522 0.77084 1.20796 1.22596 1.19326 1.21159 0.97334 0.87628 0.91920 1.22042 0.94282 0.83216 1.01708 1.45688 1.57619 1.24148 1.08126 1.17429 0.78476 0.83276 0.83974 1.90853 1.56833 1.65411 1.32999 1.19895 1.11831 0.96867 0.88018 1.21248 1.00141 0.94125 0.98449 1.20057 1.10669 0.95357 0.92278 1.98327 1.82392 1.51760 1.69441 1.22396 0.98662 0.91284 0.93965 1.41871 1.42490 1.17737 1.08714 0.71522 0.98256 0.96079 0.94249 0.94281 0.91416 0.90384 0.94448 0.94869 0.75020 0.84190 0.75709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.32 9.02 127.77 1.15 9.48 16 2 N -0.61 -29.55 2.93 -726.94 -2.13 -31.67 16 3 C -0.27 -14.32 9.68 84.03 0.81 -13.50 16 4 H 0.08 3.98 7.86 -2.92 -0.02 3.95 16 5 C -0.06 -3.11 5.06 84.86 0.43 -2.68 16 6 N -0.94 -56.01 10.67 21.65 0.23 -55.77 16 7 Si 0.97 44.93 29.58 68.60 2.03 46.96 16 8 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 9 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 11 C 0.15 5.20 5.82 86.38 0.50 5.70 16 12 C 0.11 4.27 6.00 86.38 0.52 4.79 16 13 N -0.70 -19.00 5.55 -467.08 -2.59 -21.60 16 14 C 0.58 18.22 7.79 86.44 0.67 18.89 16 15 O -0.58 -24.75 16.88 -4.33 -0.07 -24.82 16 16 C -0.05 -1.21 7.05 40.35 0.28 -0.93 16 17 C -0.11 -2.72 10.65 22.59 0.24 -2.48 16 18 C -0.15 -2.76 6.66 22.04 0.15 -2.61 16 19 Cl -0.05 -0.83 29.30 -2.72 -0.08 -0.91 16 20 C 0.08 0.84 11.87 83.48 0.99 1.84 16 21 N -0.51 -6.29 6.00 -183.50 -1.10 -7.39 16 22 H 0.44 2.13 8.19 -92.71 -0.76 1.37 16 23 H 0.00 -0.05 7.40 -2.39 -0.02 -0.07 16 24 H 0.02 1.09 7.21 -2.39 -0.02 1.07 16 25 H 0.04 1.55 7.83 -2.39 -0.02 1.53 16 26 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 27 H 0.07 2.17 8.03 -2.39 -0.02 2.15 16 28 H 0.08 2.25 7.86 -2.39 -0.02 2.23 16 29 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.41 6.97 7.60 -92.71 -0.70 6.26 16 32 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16 33 H 0.23 0.45 8.06 -2.91 -0.02 0.43 16 Total: -1.00 -75.57 304.52 1.72 -73.85 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -0.31 Total: 2.87 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: 5.75 Total: 18.49 kcal Atomic # 7 Polarization: -110.85 SS G_CDS: -5.59 Total: -116.44 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.07 Total: -24.82 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.08 Total: -0.91 kcal Total: -75.57 1.72 -73.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690923974.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.651 kcal (2) G-P(sol) polarization free energy of solvation -75.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds