Wall clock time and date at job start Mon Mar 30 2020 01:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47490 * 2 1 4 4 C 1.52995 * 109.46748 * 239.99793 * 2 1 3 5 5 N 1.46500 * 109.47361 * 185.00030 * 4 2 1 6 6 C 1.36937 * 120.00099 * 179.97438 * 5 4 2 7 7 H 1.07993 * 120.00357 * 0.02562 * 6 5 4 8 8 C 1.38814 * 119.99746 * 179.97438 * 6 5 4 9 9 N 1.31620 * 120.00222 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00066 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47169 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47370 * 120.00196 * 10 8 6 13 13 H 1.48500 * 109.47488 * 240.00496 * 10 8 6 14 14 N 1.46505 * 109.47125 * 120.00141 * 2 1 3 15 15 C 1.34773 * 120.00095 * 274.99839 * 14 2 1 16 16 O 1.21703 * 119.99823 * 359.97438 * 15 14 2 17 17 C 1.46660 * 120.00151 * 179.72491 * 15 14 2 18 18 C 1.37896 * 126.22489 * 180.27247 * 17 15 14 19 19 C 1.39884 * 107.09700 * 180.02562 * 18 17 15 20 20 Cl 1.73604 * 126.07616 * 179.97438 * 19 18 17 21 21 C 1.35520 * 107.85517 * 359.97438 * 19 18 17 22 22 N 1.35636 * 108.84710 * 359.73355 * 21 19 18 23 23 H 0.96998 * 125.67632 * 180.29514 * 22 21 19 24 24 H 1.08998 * 109.47796 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46874 * 299.99999 * 1 2 3 26 26 H 1.08995 * 109.47220 * 59.99547 * 1 2 3 27 27 H 1.09005 * 109.47349 * 305.00113 * 4 2 1 28 28 H 1.09002 * 109.47351 * 65.00284 * 4 2 1 29 29 H 0.96998 * 119.99598 * 0.02562 * 5 4 2 30 30 H 0.97002 * 120.00657 * 179.97438 * 9 8 6 31 31 H 0.97000 * 119.99792 * 94.99404 * 14 2 1 32 32 H 1.07998 * 126.45486 * 0.02562 * 18 17 15 33 33 H 1.07997 * 125.58083 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 3.4999 -0.8265 -1.1907 6 6 4.1836 -1.4390 -2.2068 7 1 3.6465 -1.8442 -3.0516 8 6 5.5670 -1.5382 -2.1515 9 7 6.2217 -1.0440 -1.1222 10 14 6.4997 -2.3731 -3.5380 11 1 5.5393 -2.8396 -4.5701 12 1 7.4500 -1.4079 -4.1470 13 1 7.2515 -3.5351 -2.9996 14 7 2.0183 -0.6907 1.1962 15 6 2.1471 -0.0184 2.3571 16 8 1.8581 1.1626 2.4117 17 6 2.6302 -0.7112 3.5561 18 6 2.8048 -0.1533 4.8050 19 6 3.2794 -1.1660 5.6452 20 17 3.6663 -0.9995 7.3293 21 6 3.3836 -2.3003 4.9109 22 7 2.9859 -2.0382 3.6409 23 1 2.9591 -2.6787 2.9130 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.6052 -1.7199 -1.2951 28 1 1.7515 -0.1584 -2.1370 29 1 3.9823 -0.4629 -0.4317 30 1 7.1884 -1.1136 -1.0833 31 1 2.2489 -1.6318 1.1526 32 1 2.6116 0.8725 5.0823 33 1 3.7236 -3.2574 5.2779 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699353923.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:50 Heat of formation + Delta-G solvation = -15.057392 kcal Electronic energy + Delta-G solvation = -18212.262236 eV Core-core repulsion = 15105.785293 eV Total energy + Delta-G solvation = -3106.476942 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.39959 -40.39576 -37.71304 -37.33031 -35.51633 -33.26012 -32.03782 -31.68232 -29.92867 -27.44032 -24.86104 -24.14121 -22.22464 -21.44922 -21.27246 -20.15728 -19.10962 -17.40060 -17.00180 -16.59429 -16.27553 -15.55856 -15.42144 -15.32812 -14.99805 -14.84580 -14.45496 -13.94240 -13.89526 -13.65589 -13.55293 -13.09424 -12.83147 -12.79552 -12.65793 -12.11665 -11.92259 -11.80579 -11.72012 -11.26347 -10.98527 -10.22459 -9.92517 -9.27582 -9.03466 -7.96116 -5.26106 0.33344 1.22088 1.44655 1.47488 1.49347 1.58510 1.97832 2.27541 2.30688 2.55053 3.38786 3.69695 3.87270 4.02385 4.07751 4.18532 4.28303 4.48230 4.56606 4.77747 4.84103 4.86247 4.92903 5.09455 5.29511 5.35109 5.44792 5.50836 5.58495 6.24330 6.27487 6.49573 7.09290 7.32074 8.04975 8.28483 9.26862 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.017913 B = 0.004635 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.759658 B = 6039.255168 C = 7222.949117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.140 3.860 3 H 0.062 0.938 4 C 0.145 3.855 5 N -0.745 5.745 6 C -0.243 4.243 7 H 0.080 0.920 8 C -0.072 4.072 9 N -0.968 5.968 10 Si 0.972 3.028 11 H -0.264 1.264 12 H -0.299 1.299 13 H -0.293 1.293 14 N -0.702 5.702 15 C 0.587 3.413 16 O -0.572 6.572 17 C -0.055 4.055 18 C -0.111 4.111 19 C -0.147 4.147 20 Cl -0.045 7.045 21 C 0.066 3.934 22 N -0.514 5.514 23 H 0.437 0.563 24 H 0.074 0.926 25 H 0.051 0.949 26 H 0.082 0.918 27 H 0.044 0.956 28 H 0.040 0.960 29 H 0.373 0.627 30 H 0.250 0.750 31 H 0.406 0.594 32 H 0.147 0.853 33 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.999 -5.551 11.663 16.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.035 3.965 3 H 0.080 0.920 4 C 0.018 3.982 5 N -0.388 5.388 6 C -0.375 4.375 7 H 0.098 0.902 8 C -0.264 4.264 9 N -0.619 5.619 10 Si 0.801 3.199 11 H -0.188 1.188 12 H -0.227 1.227 13 H -0.220 1.220 14 N -0.352 5.352 15 C 0.376 3.624 16 O -0.452 6.452 17 C -0.169 4.169 18 C -0.138 4.138 19 C -0.179 4.179 20 Cl -0.017 7.017 21 C -0.073 4.073 22 N -0.111 5.111 23 H 0.279 0.721 24 H 0.093 0.907 25 H 0.071 0.929 26 H 0.101 0.899 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.205 0.795 30 H 0.059 0.941 31 H 0.241 0.759 32 H 0.165 0.835 33 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -10.226 -4.873 11.444 16.102 hybrid contribution 1.224 -0.554 -0.579 1.463 sum -9.003 -5.427 10.865 15.118 Atomic orbital electron populations 1.22012 0.92380 1.03291 1.02825 1.21174 0.95543 0.96289 0.83490 0.91999 1.21153 0.83992 0.98184 0.94827 1.42563 1.01873 1.70000 1.24352 1.19673 0.89843 1.28245 0.99728 0.90162 1.25528 0.97523 1.02973 1.00389 1.69834 1.06998 1.52765 1.32315 0.85104 0.78508 0.77294 0.78989 1.18836 1.22683 1.21982 1.45781 1.66288 1.14212 1.08955 1.17206 0.76991 0.85854 0.82375 1.90797 1.52851 1.16305 1.85281 1.20123 1.15410 0.85680 0.95686 1.21228 1.02218 0.99864 0.90472 1.20010 1.14690 0.95753 0.87486 1.98316 1.93309 1.97946 1.12121 1.22358 1.01693 1.00557 0.82711 1.41954 1.48972 1.08807 1.11412 0.72150 0.90681 0.92941 0.89909 0.93776 0.94204 0.79460 0.94138 0.75893 0.83502 0.76360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.48 71.98 0.68 -2.88 16 2 C 0.14 4.43 2.73 44.99 0.12 4.55 16 3 H 0.06 2.34 7.58 -2.39 -0.02 2.32 16 4 C 0.15 5.17 5.82 86.38 0.50 5.67 16 5 N -0.74 -35.27 5.43 -343.46 -1.87 -37.14 16 6 C -0.24 -12.78 9.99 84.03 0.84 -11.94 16 7 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 8 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 9 N -0.97 -57.67 13.06 21.65 0.28 -57.39 16 10 Si 0.97 44.41 29.55 68.60 2.03 46.43 16 11 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 12 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 13 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 14 N -0.70 -21.30 4.51 -446.52 -2.02 -23.32 16 15 C 0.59 19.79 7.75 86.44 0.67 20.46 16 16 O -0.57 -23.27 16.54 -4.36 -0.07 -23.34 16 17 C -0.06 -1.58 7.05 40.35 0.28 -1.29 16 18 C -0.11 -3.12 10.65 22.59 0.24 -2.88 16 19 C -0.15 -3.42 6.66 22.04 0.15 -3.28 16 20 Cl -0.05 -0.96 29.30 -2.72 -0.08 -1.04 16 21 C 0.07 1.21 11.87 83.48 0.99 2.20 16 22 N -0.51 -10.63 6.00 -183.50 -1.10 -11.73 16 23 H 0.44 6.96 8.19 -92.71 -0.76 6.20 16 24 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.08 1.76 8.14 -2.39 -0.02 1.75 16 27 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 28 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.37 19.43 7.33 -92.71 -0.68 18.75 16 30 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 31 H 0.41 10.84 7.73 -92.71 -0.72 10.13 16 32 H 0.15 4.26 8.06 -2.91 -0.02 4.23 16 33 H 0.22 2.17 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -68.98 307.02 1.13 -67.85 By element: Atomic # 1 Polarization: 33.54 SS G_CDS: -0.99 Total: 32.55 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: 4.95 Total: 7.13 kcal Atomic # 7 Polarization: -124.88 SS G_CDS: -4.70 Total: -129.58 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.07 Total: -23.34 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.08 Total: -1.04 kcal Total: -68.98 1.13 -67.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699353923.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.792 kcal (2) G-P(sol) polarization free energy of solvation -68.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds