Wall clock time and date at job start Mon Mar 30 2020 00:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36937 * 120.00336 * 2 1 4 4 H 1.07993 * 119.99834 * 203.04612 * 3 2 1 5 5 C 1.38808 * 119.99826 * 23.04469 * 3 2 1 6 6 N 1.31621 * 120.00366 * 12.93004 * 5 3 2 7 7 Si 1.86796 * 119.99983 * 192.93213 * 5 3 2 8 8 H 1.48495 * 109.47752 * 89.99994 * 7 5 3 9 9 H 1.48504 * 109.47202 * 209.99925 * 7 5 3 10 10 H 1.48497 * 109.47095 * 329.99449 * 7 5 3 11 11 C 1.46501 * 119.99623 * 180.02562 * 2 1 3 12 12 C 1.52994 * 109.47412 * 90.00074 * 11 2 1 13 13 N 1.46503 * 109.47033 * 179.97438 * 12 11 2 14 14 C 1.34781 * 119.99847 * 180.27288 * 13 12 11 15 15 O 1.21644 * 119.99993 * 359.72428 * 14 13 12 16 16 C 1.47182 * 120.00019 * 179.72280 * 14 13 12 17 17 C 1.35085 * 122.48432 * 179.73740 * 16 14 13 18 18 S 1.76195 * 108.21628 * 179.87726 * 17 16 14 19 19 C 1.76053 * 90.15813 * 0.31993 * 18 17 16 20 20 O 1.35494 * 125.17956 * 179.83703 * 19 18 17 21 21 N 1.29252 * 109.64073 * 359.81056 * 19 18 17 22 22 H 1.08998 * 109.47416 * 275.12592 * 1 2 3 23 23 H 1.09002 * 109.46944 * 35.11997 * 1 2 3 24 24 H 1.09003 * 109.47531 * 155.12212 * 1 2 3 25 25 H 0.97000 * 120.00186 * 180.02562 * 6 5 3 26 26 H 1.09003 * 109.47087 * 329.99470 * 11 2 1 27 27 H 1.09007 * 109.46708 * 210.00230 * 11 2 1 28 28 H 1.08994 * 109.47620 * 59.99428 * 12 11 2 29 29 H 1.09001 * 109.46954 * 299.99569 * 12 11 2 30 30 H 0.96995 * 120.00353 * 359.97438 * 13 12 11 31 31 H 1.07998 * 125.89714 * 359.96395 * 17 16 14 32 32 H 0.96702 * 113.99447 * 269.97363 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2231 -0.3661 5 6 1.5388 2.3400 0.4706 6 7 0.4119 2.2598 1.1458 7 14 2.3160 4.0072 0.1455 8 1 1.7990 4.5533 -1.1350 9 1 1.9760 4.9363 1.2530 10 1 3.7910 3.8576 0.0602 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7099 -1.4432 13 7 3.1854 -2.9784 -1.4437 14 6 3.5273 -3.5587 -2.6111 15 8 3.2228 -3.0317 -3.6644 16 6 4.2690 -4.8300 -2.6116 17 6 4.6322 -5.4575 -3.7513 18 16 5.4967 -6.9303 -3.3177 19 6 5.2765 -6.5626 -1.6101 20 8 5.7198 -7.3275 -0.5834 21 7 4.6279 -5.4516 -1.4851 22 1 -0.3634 0.0918 1.0235 23 1 -0.3633 0.8406 -0.5912 24 1 -0.3634 -0.9323 -0.4323 25 1 -0.0152 3.0663 1.4743 26 1 1.6083 -2.0286 0.5130 27 1 3.1499 -1.1387 0.5134 28 1 3.0415 -0.9501 -1.9568 29 1 1.5000 -1.8400 -1.9571 30 1 3.4285 -3.3984 -0.6038 31 1 4.4292 -5.1149 -4.7552 32 1 5.0855 -7.9947 -0.2876 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714555912.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:17 Heat of formation + Delta-G solvation = 1.402244 kcal Electronic energy + Delta-G solvation = -17796.546540 eV Core-core repulsion = 14692.827048 eV Total energy + Delta-G solvation = -3103.719492 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.54975 -38.98095 -37.40762 -36.05243 -34.19922 -31.34441 -30.32978 -28.39302 -25.92254 -25.54011 -23.50003 -22.11113 -20.65268 -19.99140 -19.53581 -18.14342 -16.78169 -16.60796 -16.24204 -15.54706 -15.21746 -14.67349 -14.65550 -13.98446 -13.85570 -13.38466 -13.14943 -12.44696 -12.38535 -12.27004 -12.20675 -11.16689 -10.88937 -10.85460 -10.58797 -10.36280 -10.25909 -10.00547 -9.97001 -9.92819 -9.84517 -9.24469 -8.70708 -8.55004 -6.78746 -5.72765 -3.21051 0.06775 0.57921 1.09804 1.67031 2.99995 3.31521 3.40288 3.45126 3.47206 3.50569 4.40426 4.52781 4.86876 4.97426 5.40126 5.43687 5.64672 5.82164 5.91374 6.26845 6.56061 6.63677 6.65698 6.76330 6.86250 7.01674 7.37544 7.71678 7.73240 7.81705 8.30504 8.39509 9.22650 9.84828 10.32985 11.32081 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.035981 B = 0.003326 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.993635 B = 8416.737846 C = 8566.615158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.597 5.597 3 C -0.260 4.260 4 H 0.070 0.930 5 C 0.004 3.996 6 N -0.907 5.907 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.143 3.857 12 C 0.093 3.907 13 N -0.701 5.701 14 C 0.584 3.416 15 O -0.536 6.536 16 C 0.030 3.970 17 C -0.166 4.166 18 S 0.097 5.903 19 C 0.257 3.743 20 O -0.430 6.430 21 N -0.459 5.459 22 H 0.033 0.967 23 H 0.042 0.958 24 H -0.001 1.001 25 H 0.253 0.747 26 H 0.042 0.958 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.407 0.593 31 H 0.196 0.804 32 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.257 -21.602 -6.290 23.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.320 5.320 3 C -0.389 4.389 4 H 0.087 0.913 5 C -0.195 4.195 6 N -0.551 5.551 7 Si 0.736 3.264 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.015 3.985 12 C -0.033 4.033 13 N -0.351 5.351 14 C 0.366 3.634 15 O -0.413 6.413 16 C -0.102 4.102 17 C -0.308 4.308 18 S 0.344 5.656 19 C -0.063 4.063 20 O -0.237 6.237 21 N -0.185 5.185 22 H 0.052 0.948 23 H 0.061 0.939 24 H 0.018 0.982 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.242 0.758 31 H 0.213 0.787 32 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 8.779 -21.362 -6.918 24.109 hybrid contribution -0.289 1.106 0.361 1.199 sum 8.489 -20.256 -6.557 22.921 Atomic orbital electron populations 1.20843 0.82296 0.95601 0.99636 1.43789 1.01957 1.00295 1.85923 1.19217 0.98407 0.85509 1.35812 0.91263 1.25027 0.97842 0.98613 0.97973 1.70075 1.19412 1.27275 1.38365 0.86223 0.78811 0.83914 0.77408 1.21399 1.21721 1.20418 1.20840 0.96905 0.89193 0.91606 1.22537 0.95660 0.82652 1.02439 1.45947 1.56317 1.24743 1.08085 1.17060 0.79204 0.82378 0.84745 1.90839 1.55428 1.63787 1.31254 1.20155 1.04284 0.98937 0.86775 1.27159 1.01477 0.97720 1.04398 1.85311 1.53683 1.22067 1.04552 1.25004 0.98940 0.92345 0.90046 1.84876 1.42765 1.48957 1.47119 1.66753 1.13144 1.07663 1.30930 0.94848 0.93924 0.98242 0.93697 0.93953 0.92794 0.91217 0.91875 0.75840 0.78675 0.73231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.00 8.98 59.85 0.54 4.54 16 2 N -0.60 -15.16 2.92 -181.12 -0.53 -15.68 16 3 C -0.26 -7.23 9.65 -15.06 -0.15 -7.37 16 4 H 0.07 1.89 7.86 -52.49 -0.41 1.48 16 5 C 0.00 0.11 5.10 -17.43 -0.09 0.02 16 6 N -0.91 -26.61 10.71 55.49 0.59 -26.02 16 7 Si 0.91 22.13 29.57 -169.99 -5.03 17.10 16 8 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 9 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 C 0.14 2.91 5.76 -4.04 -0.02 2.89 16 12 C 0.09 1.75 6.00 -4.04 -0.02 1.72 16 13 N -0.70 -11.19 5.55 -61.46 -0.34 -11.53 16 14 C 0.58 9.47 7.79 -12.63 -0.10 9.37 16 15 O -0.54 -10.25 16.67 5.24 0.09 -10.16 16 16 C 0.03 0.39 6.67 -84.60 -0.56 -0.17 16 17 C -0.17 -1.72 10.84 29.61 0.32 -1.40 16 18 S 0.10 0.74 23.42 -107.50 -2.52 -1.77 16 19 C 0.26 2.41 8.88 51.68 0.46 2.87 16 20 O -0.43 -3.02 13.64 -18.18 -0.25 -3.27 16 21 N -0.46 -5.55 10.01 -11.34 -0.11 -5.66 16 22 H 0.03 0.89 7.34 -51.93 -0.38 0.51 16 23 H 0.04 1.13 7.34 -51.93 -0.38 0.75 16 24 H 0.00 -0.02 8.03 -51.93 -0.42 -0.44 16 25 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.04 0.79 8.07 -51.93 -0.42 0.37 16 27 H 0.05 1.09 8.04 -51.92 -0.42 0.67 16 28 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.41 5.76 7.95 -40.82 -0.32 5.43 16 31 H 0.20 1.77 8.01 -52.49 -0.42 1.35 16 32 H 0.41 0.63 9.06 45.56 0.41 1.04 16 LS Contribution 299.78 15.07 4.52 4.52 Total: -1.00 -33.78 299.78 -5.95 -39.72 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -2.74 Total: 0.27 kcal Atomic # 6 Polarization: 12.10 SS G_CDS: 0.37 Total: 12.47 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: -0.39 Total: -58.89 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -0.16 Total: -13.43 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.10 kcal Atomic # 16 Polarization: 0.74 SS G_CDS: -2.52 Total: -1.77 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.78 -5.95 -39.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714555912.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.123 kcal (2) G-P(sol) polarization free energy of solvation -33.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds