Wall clock time and date at job start Mon Mar 30 2020 00:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36937 * 120.00336 * 2 1 4 4 H 1.07993 * 119.99834 * 203.04612 * 3 2 1 5 5 C 1.38808 * 119.99826 * 23.04469 * 3 2 1 6 6 N 1.31621 * 120.00366 * 12.93004 * 5 3 2 7 7 Si 1.86796 * 119.99983 * 192.93213 * 5 3 2 8 8 H 1.48495 * 109.47752 * 89.99994 * 7 5 3 9 9 H 1.48504 * 109.47202 * 209.99925 * 7 5 3 10 10 H 1.48497 * 109.47095 * 329.99449 * 7 5 3 11 11 C 1.46501 * 119.99623 * 180.02562 * 2 1 3 12 12 C 1.52994 * 109.47412 * 90.00074 * 11 2 1 13 13 N 1.46503 * 109.47033 * 179.97438 * 12 11 2 14 14 C 1.34781 * 119.99847 * 180.27288 * 13 12 11 15 15 O 1.21644 * 119.99993 * 359.72428 * 14 13 12 16 16 C 1.47182 * 120.00019 * 179.72280 * 14 13 12 17 17 C 1.35085 * 122.48432 * 179.73740 * 16 14 13 18 18 S 1.76195 * 108.21628 * 179.87726 * 17 16 14 19 19 C 1.76053 * 90.15813 * 0.31993 * 18 17 16 20 20 O 1.35494 * 125.17956 * 179.83703 * 19 18 17 21 21 N 1.29252 * 109.64073 * 359.81056 * 19 18 17 22 22 H 1.08998 * 109.47416 * 275.12592 * 1 2 3 23 23 H 1.09002 * 109.46944 * 35.11997 * 1 2 3 24 24 H 1.09003 * 109.47531 * 155.12212 * 1 2 3 25 25 H 0.97000 * 120.00186 * 180.02562 * 6 5 3 26 26 H 1.09003 * 109.47087 * 329.99470 * 11 2 1 27 27 H 1.09007 * 109.46708 * 210.00230 * 11 2 1 28 28 H 1.08994 * 109.47620 * 59.99428 * 12 11 2 29 29 H 1.09001 * 109.46954 * 299.99569 * 12 11 2 30 30 H 0.96995 * 120.00353 * 359.97438 * 13 12 11 31 31 H 1.07998 * 125.89714 * 359.96395 * 17 16 14 32 32 H 0.96702 * 113.99447 * 269.97363 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2231 -0.3661 5 6 1.5388 2.3400 0.4706 6 7 0.4119 2.2598 1.1458 7 14 2.3160 4.0072 0.1455 8 1 1.7990 4.5533 -1.1350 9 1 1.9760 4.9363 1.2530 10 1 3.7910 3.8576 0.0602 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7099 -1.4432 13 7 3.1854 -2.9784 -1.4437 14 6 3.5273 -3.5587 -2.6111 15 8 3.2228 -3.0317 -3.6644 16 6 4.2690 -4.8300 -2.6116 17 6 4.6322 -5.4575 -3.7513 18 16 5.4967 -6.9303 -3.3177 19 6 5.2765 -6.5626 -1.6101 20 8 5.7198 -7.3275 -0.5834 21 7 4.6279 -5.4516 -1.4851 22 1 -0.3634 0.0918 1.0235 23 1 -0.3633 0.8406 -0.5912 24 1 -0.3634 -0.9323 -0.4323 25 1 -0.0152 3.0663 1.4743 26 1 1.6083 -2.0286 0.5130 27 1 3.1499 -1.1387 0.5134 28 1 3.0415 -0.9501 -1.9568 29 1 1.5000 -1.8400 -1.9571 30 1 3.4285 -3.3984 -0.6038 31 1 4.4292 -5.1149 -4.7552 32 1 5.0855 -7.9947 -0.2876 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714555912.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:17 Heat of formation + Delta-G solvation = -27.586799 kcal Electronic energy + Delta-G solvation = -17797.803599 eV Core-core repulsion = 14692.827048 eV Total energy + Delta-G solvation = -3104.976552 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.52513 -39.99142 -38.18174 -37.79527 -35.79229 -33.30894 -31.22035 -29.99142 -27.94005 -26.69943 -24.91537 -23.31626 -22.39407 -20.98650 -20.38683 -19.04545 -18.68964 -17.65665 -17.22276 -16.94992 -16.60557 -16.32816 -15.59800 -15.42027 -15.19964 -15.01641 -14.52351 -14.23194 -13.96792 -13.11679 -13.06532 -12.86844 -12.80674 -12.68971 -12.48860 -12.19033 -11.98192 -11.81470 -11.43018 -10.83019 -10.68575 -10.66883 -10.24669 -9.86180 -8.85174 -7.85507 -5.36326 -0.68220 -0.10004 0.33318 0.74329 1.46314 1.48348 1.56638 2.07216 2.18476 2.42881 2.54473 3.28365 3.56800 3.78869 4.06510 4.13082 4.19786 4.26981 4.61117 4.66620 4.81374 5.01684 5.08297 5.27810 5.41203 5.61565 5.69148 6.09731 6.30040 6.35538 6.54307 7.06640 7.12325 7.81745 8.24901 9.17698 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.035981 B = 0.003326 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.993635 B = 8416.737846 C = 8566.615158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.615 5.615 3 C -0.270 4.270 4 H 0.070 0.930 5 C -0.049 4.049 6 N -0.936 5.936 7 Si 0.969 3.031 8 H -0.287 1.287 9 H -0.292 1.292 10 H -0.269 1.269 11 C 0.147 3.853 12 C 0.114 3.886 13 N -0.696 5.696 14 C 0.584 3.416 15 O -0.573 6.573 16 C 0.006 3.994 17 C -0.169 4.169 18 S 0.180 5.820 19 C 0.255 3.745 20 O -0.434 6.434 21 N -0.488 5.488 22 H 0.011 0.989 23 H 0.015 0.985 24 H 0.032 0.968 25 H 0.250 0.750 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.045 0.955 29 H 0.053 0.947 30 H 0.417 0.583 31 H 0.204 0.796 32 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.775 -23.678 -6.765 26.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.339 5.339 3 C -0.400 4.400 4 H 0.088 0.912 5 C -0.245 4.245 6 N -0.582 5.582 7 Si 0.797 3.203 8 H -0.214 1.214 9 H -0.218 1.218 10 H -0.194 1.194 11 C 0.020 3.980 12 C -0.012 4.012 13 N -0.346 5.346 14 C 0.368 3.632 15 O -0.453 6.453 16 C -0.126 4.126 17 C -0.311 4.311 18 S 0.429 5.571 19 C -0.065 4.065 20 O -0.245 6.245 21 N -0.216 5.216 22 H 0.030 0.970 23 H 0.034 0.966 24 H 0.050 0.950 25 H 0.059 0.941 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.254 0.746 31 H 0.221 0.779 32 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges 10.325 -23.520 -7.376 26.725 hybrid contribution -0.676 1.533 0.481 1.743 sum 9.649 -21.987 -6.896 24.982 Atomic orbital electron populations 1.20607 0.82409 0.96083 0.98017 1.44017 1.02303 1.01403 1.86151 1.19518 0.98582 0.86792 1.35125 0.91245 1.25788 0.98570 1.01888 0.98213 1.70224 1.20694 1.27766 1.39507 0.85236 0.78429 0.79707 0.76880 1.21381 1.21792 1.19352 1.20924 0.96821 0.87753 0.92529 1.21984 0.95077 0.83460 1.00704 1.45753 1.56182 1.23767 1.08919 1.17496 0.78606 0.83237 0.83873 1.90807 1.56978 1.65180 1.32326 1.19620 1.06310 0.98449 0.88194 1.27438 1.00676 0.98818 1.04205 1.85086 1.51195 1.18864 1.01959 1.25172 0.97759 0.91958 0.91623 1.84840 1.43680 1.49323 1.46667 1.66661 1.14827 1.09082 1.30991 0.97034 0.96622 0.94956 0.94105 0.91773 0.92569 0.93636 0.92866 0.74648 0.77928 0.70410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.72 8.98 127.77 1.15 9.87 16 2 N -0.62 -31.38 2.92 -726.94 -2.12 -33.51 16 3 C -0.27 -15.13 9.65 84.03 0.81 -14.31 16 4 H 0.07 3.80 7.86 -2.91 -0.02 3.78 16 5 C -0.05 -2.80 5.10 84.86 0.43 -2.36 16 6 N -0.94 -55.85 10.71 21.65 0.23 -55.62 16 7 Si 0.97 45.86 29.57 68.60 2.03 47.88 16 8 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 9 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 10 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 11 C 0.15 5.90 5.76 86.38 0.50 6.40 16 12 C 0.11 4.32 6.00 86.38 0.52 4.84 16 13 N -0.70 -22.02 5.55 -466.60 -2.59 -24.61 16 14 C 0.58 18.88 7.79 86.59 0.67 19.56 16 15 O -0.57 -22.19 16.67 -4.17 -0.07 -22.26 16 16 C 0.01 0.15 6.67 40.50 0.27 0.42 16 17 C -0.17 -3.19 10.84 67.09 0.73 -2.46 16 18 S 0.18 2.18 23.42 -56.49 -1.32 0.86 16 19 C 0.26 4.12 8.88 130.62 1.16 5.28 16 20 O -0.43 -4.82 13.64 -87.95 -1.20 -6.02 16 21 N -0.49 -11.04 10.01 -304.25 -3.05 -14.08 16 22 H 0.01 0.62 7.34 -2.39 -0.02 0.60 16 23 H 0.01 0.83 7.34 -2.39 -0.02 0.81 16 24 H 0.03 1.37 8.03 -2.39 -0.02 1.35 16 25 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 26 H 0.06 2.31 8.07 -2.39 -0.02 2.29 16 27 H 0.06 2.23 8.04 -2.38 -0.02 2.21 16 28 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.05 2.11 8.14 -2.39 -0.02 2.10 16 30 H 0.42 11.50 7.95 -92.71 -0.74 10.76 16 31 H 0.20 3.36 8.01 -2.91 -0.02 3.34 16 32 H 0.43 -0.04 9.06 -74.06 -0.67 -0.71 16 Total: -1.00 -73.16 299.78 -2.09 -75.25 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -0.24 Total: 4.89 kcal Atomic # 6 Polarization: 20.98 SS G_CDS: 6.24 Total: 27.22 kcal Atomic # 7 Polarization: -120.29 SS G_CDS: -7.53 Total: -127.82 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -1.27 Total: -28.28 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.88 kcal Atomic # 16 Polarization: 2.18 SS G_CDS: -1.32 Total: 0.86 kcal Total: -73.16 -2.09 -75.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714555912.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.665 kcal (2) G-P(sol) polarization free energy of solvation -73.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds