Wall clock time and date at job start Mon Mar 30 2020 01:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00235 * 2 1 4 4 H 1.48495 * 109.47555 * 270.00498 * 3 2 1 5 5 H 1.48503 * 109.46814 * 30.00387 * 3 2 1 6 6 H 1.48496 * 109.47318 * 149.99879 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99394 * 359.97438 * 7 2 1 10 10 O 1.42896 * 112.94519 * 48.41344 * 9 7 2 11 11 C 1.53946 * 113.74032 * 276.67284 * 9 7 2 12 12 N 1.47580 * 86.11645 * 222.04891 * 11 9 7 13 13 C 1.34780 * 134.49428 * 204.63585 * 12 11 9 14 14 O 1.21279 * 119.99861 * 180.02562 * 13 12 11 15 15 C 1.50698 * 119.99721 * 0.02562 * 13 12 11 16 16 H 1.09000 * 109.57288 * 334.73357 * 15 13 12 17 17 C 1.53100 * 109.57342 * 214.35412 * 15 13 12 18 18 C 1.52583 * 109.95537 * 177.16703 * 17 15 13 19 19 C 1.52584 * 110.72520 * 70.67294 * 18 17 15 20 20 C 1.53095 * 109.95559 * 289.32128 * 19 18 17 21 21 S 1.81742 * 109.58054 * 94.99502 * 15 13 12 22 22 C 1.47585 * 91.01539 * 24.64210 * 12 11 9 23 23 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 24 24 H 0.96709 * 113.99737 * 309.65795 * 10 9 7 25 25 H 1.08996 * 113.77105 * 336.35304 * 11 9 7 26 26 H 1.09002 * 113.76556 * 107.75236 * 11 9 7 27 27 H 1.09001 * 109.38584 * 297.31504 * 17 15 13 28 28 H 1.08997 * 109.39477 * 57.01360 * 17 15 13 29 29 H 1.08997 * 109.22486 * 310.35109 * 18 17 15 30 30 H 1.09001 * 109.22684 * 190.99215 * 18 17 15 31 31 H 1.09004 * 109.38798 * 169.17345 * 19 18 17 32 32 H 1.09002 * 109.39220 * 49.47548 * 19 18 17 33 33 H 1.09002 * 109.58042 * 303.22062 * 20 19 18 34 34 H 1.09002 * 109.68377 * 182.89723 * 20 19 18 35 35 H 1.08992 * 113.77150 * 221.05543 * 22 12 11 36 36 H 1.09001 * 113.76777 * 89.66145 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 0.2157 -2.5446 -0.9844 11 6 0.7998 -2.9543 1.3992 12 7 1.2211 -4.3068 0.9852 13 6 0.8829 -5.5570 1.3583 14 8 1.4103 -6.5116 0.8278 15 6 -0.1505 -5.7686 2.4345 16 1 -0.1839 -4.8950 3.0855 17 6 0.2103 -7.0096 3.2552 18 6 -0.7917 -7.1920 4.3913 19 6 -2.1503 -7.6255 3.8487 20 6 -2.8105 -6.4626 3.1034 21 16 -1.7806 -6.0226 1.6721 22 6 2.1615 -3.7405 -0.0012 23 1 -0.4849 0.8400 0.0004 24 1 -0.3765 -1.7802 -0.9678 25 1 1.3966 -2.5373 2.2104 26 1 -0.2731 -2.8605 1.5670 27 1 0.1902 -7.8882 2.6103 28 1 1.2109 -6.8905 3.6707 29 1 -0.9032 -6.2490 4.9264 30 1 -0.4206 -7.9523 5.0787 31 1 -2.7889 -7.9340 4.6765 32 1 -2.0163 -8.4640 3.1652 33 1 -2.8965 -5.6038 3.7692 34 1 -3.8019 -6.7607 2.7622 35 1 2.1758 -4.2743 -0.9513 36 1 3.1583 -3.5545 0.3987 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334453807.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:40 Heat of formation + Delta-G solvation = -80.118943 kcal Electronic energy + Delta-G solvation = -19212.384668 eV Core-core repulsion = 16208.670495 eV Total energy + Delta-G solvation = -3003.714173 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.31210 -39.34505 -37.47707 -35.85044 -34.13438 -32.90711 -30.55158 -28.61164 -27.05336 -26.97115 -24.36218 -21.87715 -21.65157 -20.10470 -19.30237 -18.23937 -18.01585 -17.26630 -16.76674 -16.43598 -15.96158 -15.69687 -15.18225 -15.00039 -14.63539 -14.54345 -14.24399 -13.94615 -13.82026 -13.47437 -13.39959 -12.88700 -12.78952 -12.60269 -12.42124 -12.22543 -12.21304 -11.90090 -11.72785 -11.37013 -10.99198 -10.71610 -10.61898 -10.26342 -9.63449 -8.80483 -8.26327 -6.44095 0.25659 1.44302 1.47254 1.50650 1.59615 1.77725 1.90765 2.40969 2.95473 3.24011 3.52302 3.74038 3.79779 3.87317 4.02769 4.10120 4.15693 4.37753 4.40893 4.56131 4.59842 4.66634 4.74617 4.86229 4.88507 4.90009 4.99389 5.04993 5.10296 5.21565 5.32233 5.72769 5.91824 6.61723 6.73148 6.99843 7.29693 7.46914 8.79827 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.030650 B = 0.004960 C = 0.004733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.326303 B = 5643.353806 C = 5915.053025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.034 3.966 3 Si 0.970 3.030 4 H -0.280 1.280 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.556 4.556 8 H 0.074 0.926 9 C 0.222 3.778 10 O -0.587 6.587 11 C 0.091 3.909 12 N -0.628 5.628 13 C 0.540 3.460 14 O -0.584 6.584 15 C -0.057 4.057 16 H 0.110 0.890 17 C -0.101 4.101 18 C -0.122 4.122 19 C -0.119 4.119 20 C -0.072 4.072 21 S -0.288 6.288 22 C 0.110 3.890 23 H 0.276 0.724 24 H 0.388 0.612 25 H 0.097 0.903 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.123 0.877 35 H 0.057 0.943 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.283 -8.274 11.745 14.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.167 4.167 3 Si 0.795 3.205 4 H -0.206 1.206 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.594 4.594 8 H 0.092 0.908 9 C 0.180 3.820 10 O -0.400 6.400 11 C -0.031 4.031 12 N -0.360 5.360 13 C 0.329 3.671 14 O -0.466 6.466 15 C -0.188 4.188 16 H 0.128 0.872 17 C -0.140 4.140 18 C -0.159 4.159 19 C -0.158 4.158 20 C -0.219 4.219 21 S -0.062 6.062 22 C -0.012 4.012 23 H 0.086 0.914 24 H 0.243 0.757 25 H 0.115 0.885 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.116 0.884 31 H 0.126 0.874 32 H 0.087 0.913 33 H 0.115 0.885 34 H 0.141 0.859 35 H 0.075 0.925 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.259 -9.295 10.308 14.519 hybrid contribution 0.459 1.411 0.845 1.708 sum -3.800 -7.883 11.153 14.177 Atomic orbital electron populations 1.69394 1.07200 1.28956 1.50158 1.25761 0.95733 1.02643 0.92579 0.85367 0.78748 0.78236 0.78147 1.20554 1.20553 1.18897 1.21728 0.94190 0.90641 1.52848 0.90780 1.20083 0.85489 0.91748 0.84647 1.86059 1.45697 1.50427 1.57801 1.24174 1.00069 0.77199 1.01675 1.50197 1.41585 1.04916 1.39349 1.19955 0.82876 0.81211 0.83061 1.90607 1.57507 1.41002 1.57453 1.23175 0.93595 1.04370 0.97709 0.87158 1.21619 1.00764 0.94513 0.97102 1.21548 0.94215 1.03534 0.96648 1.21743 0.96412 0.96661 1.00940 1.23696 1.00067 1.02463 0.95713 1.87617 1.06168 1.92007 1.20402 1.23527 0.94661 0.91775 0.91220 0.91388 0.75674 0.88490 0.91622 0.91268 0.90567 0.90724 0.88408 0.87410 0.91252 0.88462 0.85875 0.92464 0.87470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -46.26 11.09 21.45 0.24 -46.02 16 2 C 0.03 1.64 5.40 84.66 0.46 2.10 16 3 Si 0.97 39.02 29.54 68.60 2.03 41.05 16 4 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.28 -11.03 7.11 99.48 0.71 -10.33 16 6 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 7 C -0.56 -27.65 8.62 25.60 0.22 -27.43 16 8 H 0.07 3.55 7.81 -2.91 -0.02 3.53 16 9 C 0.22 10.79 1.44 -10.88 -0.02 10.77 16 10 O -0.59 -31.60 13.48 -148.98 -2.01 -33.61 16 11 C 0.09 3.93 7.70 86.48 0.67 4.60 16 12 N -0.63 -27.30 3.61 -840.30 -3.03 -30.33 16 13 C 0.54 22.77 7.08 87.66 0.62 23.39 16 14 O -0.58 -27.98 17.05 -3.03 -0.05 -28.03 16 15 C -0.06 -1.87 2.79 29.88 0.08 -1.78 16 16 H 0.11 3.31 7.72 -2.39 -0.02 3.30 16 17 C -0.10 -2.61 4.65 30.49 0.14 -2.47 16 18 C -0.12 -2.08 5.61 30.32 0.17 -1.91 16 19 C -0.12 -1.86 5.75 30.49 0.18 -1.69 16 20 C -0.07 -1.40 6.45 72.01 0.46 -0.93 16 21 S -0.29 -9.34 21.68 -56.49 -1.22 -10.56 16 22 C 0.11 4.94 8.22 86.48 0.71 5.66 16 23 H 0.28 13.18 8.31 -92.71 -0.77 12.41 16 24 H 0.39 21.05 6.46 -74.05 -0.48 20.57 16 25 H 0.10 3.84 8.09 -2.39 -0.02 3.83 16 26 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 27 H 0.07 2.04 7.86 -2.39 -0.02 2.02 16 28 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.07 1.17 8.08 -2.39 -0.02 1.15 16 30 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.07 1.24 8.06 -2.39 -0.02 1.22 16 33 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.12 2.00 8.14 -2.39 -0.02 1.99 16 35 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 36 H 0.11 4.28 8.09 -2.39 -0.02 4.26 16 Total: -1.00 -62.34 308.96 0.24 -62.10 By element: Atomic # 1 Polarization: 34.50 SS G_CDS: 0.60 Total: 35.10 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: 3.70 Total: 10.30 kcal Atomic # 7 Polarization: -73.55 SS G_CDS: -2.79 Total: -76.35 kcal Atomic # 8 Polarization: -59.58 SS G_CDS: -2.06 Total: -61.64 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Atomic # 16 Polarization: -9.34 SS G_CDS: -1.22 Total: -10.56 kcal Total: -62.34 0.24 -62.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334453807.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.018 kcal (2) G-P(sol) polarization free energy of solvation -62.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds