Wall clock time and date at job start Mon Mar 30 2020 01:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86791 * 120.00336 * 2 1 4 4 H 1.48503 * 109.47147 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47333 * 299.99857 * 3 2 1 6 6 H 1.48506 * 109.47135 * 59.99888 * 3 2 1 7 7 C 1.38798 * 119.99422 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99875 * 180.02562 * 7 2 1 9 9 S 1.76202 * 120.00240 * 0.02562 * 7 2 1 10 10 C 1.81004 * 100.00064 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47113 * 179.97438 * 10 9 7 12 12 O 1.21289 * 119.99971 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99991 * 179.97438 * 11 10 9 14 14 C 1.46505 * 120.00194 * 179.97438 * 13 11 10 15 15 H 1.08999 * 110.56472 * 323.78194 * 14 13 11 16 16 C 1.54510 * 110.50813 * 86.45335 * 14 13 11 17 17 C 1.54477 * 104.18108 * 118.57713 * 16 14 13 18 18 O 1.44642 * 104.69773 * 336.19290 * 17 16 14 19 19 C 1.44415 * 105.37338 * 40.34325 * 18 17 16 20 20 H 1.09003 * 110.37369 * 78.39849 * 19 18 17 21 21 C 1.52995 * 110.37805 * 200.73667 * 19 18 17 22 22 C 1.53006 * 117.49862 * 4.00430 * 21 19 18 23 23 C 1.52995 * 117.49936 * 295.38330 * 21 19 18 24 24 H 0.97001 * 119.99602 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47134 * 59.99837 * 10 9 7 26 26 H 1.08998 * 109.47117 * 300.00158 * 10 9 7 27 27 H 0.96994 * 119.99799 * 0.02562 * 13 11 10 28 28 H 1.09002 * 110.51305 * 237.29243 * 16 14 13 29 29 H 1.08994 * 110.51141 * 359.86573 * 16 14 13 30 30 H 1.09006 * 110.37498 * 94.92285 * 17 16 14 31 31 H 1.09000 * 110.37254 * 217.25804 * 17 16 14 32 32 H 1.08999 * 115.55499 * 149.70366 * 21 19 18 33 33 H 1.09006 * 117.49524 * 359.97438 * 22 21 19 34 34 H 1.08991 * 117.50268 * 145.01611 * 22 21 19 35 35 H 1.09003 * 117.50348 * 214.97532 * 23 21 19 36 36 H 1.09004 * 117.49982 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7104 1.3462 0.0006 5 1 1.8917 2.3964 -1.2125 6 1 1.8917 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 16 1.1291 -2.7280 0.0005 10 6 2.5156 -3.8916 0.0005 11 6 1.9871 -5.3028 0.0012 12 8 0.7907 -5.5023 0.0021 13 7 2.8437 -6.3432 0.0008 14 6 2.3299 -7.7152 0.0019 15 1 1.4253 -7.7848 0.6059 16 6 2.0547 -8.1914 -1.4419 17 6 2.9961 -9.4022 -1.6270 18 8 4.0571 -9.1923 -0.6666 19 6 3.4048 -8.6953 0.5221 20 1 2.9383 -9.5144 1.0695 21 6 4.4086 -7.9611 1.4132 22 6 5.8347 -7.7965 0.8840 23 6 5.5486 -8.7824 2.0185 24 1 -0.4849 0.8401 -0.0004 25 1 3.1243 -3.7315 0.8905 26 1 3.1242 -3.7315 -0.8894 27 1 3.8005 -6.1837 0.0004 28 1 1.0140 -8.4964 -1.5517 29 1 2.2987 -7.4053 -2.1564 30 1 2.4673 -10.3306 -1.4105 31 1 3.3964 -9.4201 -2.6406 32 1 3.9980 -7.1501 2.0147 33 1 6.0579 -8.2118 -0.0989 34 1 6.3626 -6.8772 1.1372 35 1 5.8884 -8.5116 3.0182 36 1 5.5834 -9.8459 1.7823 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000372841960.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:12 Heat of formation + Delta-G solvation = -57.440932 kcal Electronic energy + Delta-G solvation = -18571.692622 eV Core-core repulsion = 15568.961842 eV Total energy + Delta-G solvation = -3002.730781 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.48701 -38.56204 -36.65433 -34.31551 -32.43283 -31.21605 -29.57673 -28.11276 -25.48860 -23.82777 -22.57962 -21.67817 -20.76932 -19.85380 -17.94926 -16.93360 -16.73998 -15.88592 -15.65014 -15.21097 -15.17419 -14.80873 -14.54557 -14.00165 -13.80649 -13.17444 -12.79758 -12.54225 -12.22932 -11.98553 -11.77854 -11.65534 -11.54393 -11.11306 -11.07158 -11.02257 -10.75872 -10.45234 -10.38603 -9.94782 -9.79761 -9.40364 -9.08205 -8.89670 -8.23855 -6.50491 -6.22377 -3.92779 3.01597 3.06516 3.21293 3.27837 3.32409 3.49234 3.63728 3.71937 4.19976 4.25784 4.46852 4.74258 4.76722 4.82799 4.94197 5.06872 5.13059 5.17786 5.21638 5.29858 5.46816 5.49627 5.53115 5.63145 5.73311 5.83215 5.88337 5.93486 5.96280 6.07178 6.13975 6.52459 6.69832 7.59579 7.72563 8.35062 8.60677 9.23271 10.85150 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.029666 B = 0.003991 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.624087 B = 7013.546664 C = 7583.960736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.518 6.518 13 N -0.726 5.726 14 C 0.124 3.876 15 H 0.102 0.898 16 C -0.167 4.167 17 C 0.046 3.954 18 O -0.369 6.369 19 C 0.099 3.901 20 H 0.084 0.916 21 C -0.162 4.162 22 C -0.167 4.167 23 C -0.173 4.173 24 H 0.268 0.732 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.402 0.598 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.121 0.879 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.053 -18.637 0.417 21.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.392 6.392 13 N -0.381 5.381 14 C 0.017 3.983 15 H 0.120 0.880 16 C -0.206 4.206 17 C -0.031 4.031 18 O -0.288 6.288 19 C 0.041 3.959 20 H 0.102 0.898 21 C -0.180 4.180 22 C -0.204 4.204 23 C -0.210 4.210 24 H 0.078 0.922 25 H 0.107 0.893 26 H 0.108 0.892 27 H 0.238 0.762 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.111 0.889 32 H 0.139 0.861 33 H 0.124 0.876 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.114 -18.895 0.390 20.567 hybrid contribution 2.120 1.399 -0.027 2.540 sum 10.234 -17.496 0.364 20.273 Atomic orbital electron populations 1.70033 1.05956 1.27337 1.46987 1.24991 0.95024 0.99035 0.94526 0.86115 0.79594 0.81867 0.77905 1.19612 1.20557 1.20563 1.22914 0.94952 0.91648 1.58812 0.90881 1.85384 1.04929 0.96335 1.96713 1.23529 1.06561 0.95363 1.04927 1.20354 0.86561 0.86316 0.74972 1.90697 1.15344 1.85595 1.47558 1.46081 1.10172 1.04520 1.77335 1.22161 0.97466 0.82322 0.96311 0.88022 1.23418 1.00852 0.98738 0.97622 1.23448 0.88649 0.97118 0.93844 1.89149 1.30234 1.85837 1.23558 1.22700 0.91607 0.94647 0.86984 0.89795 1.22308 0.90171 1.02834 1.02669 1.22938 0.96791 1.01210 0.99451 1.22931 1.02259 0.97749 0.98040 0.92246 0.89260 0.89246 0.76244 0.89731 0.89843 0.92130 0.88923 0.86142 0.87580 0.88751 0.88782 0.88736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.15 13.22 55.49 0.73 -25.42 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.53 -15.24 9.50 30.94 0.29 -14.95 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -3.09 6.16 36.00 0.22 -2.87 16 11 C 0.53 9.83 7.84 -10.99 -0.09 9.74 16 12 O -0.52 -11.54 15.58 5.55 0.09 -11.45 16 13 N -0.73 -9.88 4.25 -52.28 -0.22 -10.10 16 14 C 0.12 1.47 3.27 -66.36 -0.22 1.26 16 15 H 0.10 1.33 7.68 -51.93 -0.40 0.93 16 16 C -0.17 -1.82 6.86 -25.16 -0.17 -1.99 16 17 C 0.05 0.41 7.65 37.93 0.29 0.70 16 18 O -0.37 -3.86 9.78 -35.23 -0.34 -4.21 16 19 C 0.10 0.98 3.61 -25.96 -0.09 0.88 16 20 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 21 C -0.16 -1.53 4.16 -90.62 -0.38 -1.91 16 22 C -0.17 -1.50 9.66 -26.73 -0.26 -1.76 16 23 C -0.17 -1.46 10.24 -26.73 -0.27 -1.73 16 24 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 26 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 27 H 0.40 4.75 7.12 -40.82 -0.29 4.46 16 28 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.08 1.03 7.96 -51.93 -0.41 0.61 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.12 1.21 7.69 -51.93 -0.40 0.81 16 33 H 0.11 1.04 7.07 -51.93 -0.37 0.67 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 315.61 15.07 4.76 4.76 Total: -1.00 -33.24 315.61 -8.21 -41.45 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -5.22 Total: 3.06 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -0.77 Total: -10.63 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: 0.51 Total: -35.52 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.26 Total: -15.66 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.24 -8.21 -41.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000372841960.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.987 kcal (2) G-P(sol) polarization free energy of solvation -33.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds