Wall clock time and date at job start Mon Mar 30 2020 01:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86791 * 120.00336 * 2 1 4 4 H 1.48503 * 109.47147 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47333 * 299.99857 * 3 2 1 6 6 H 1.48506 * 109.47135 * 59.99888 * 3 2 1 7 7 C 1.38798 * 119.99422 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99875 * 180.02562 * 7 2 1 9 9 S 1.76202 * 120.00240 * 0.02562 * 7 2 1 10 10 C 1.81004 * 100.00064 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47113 * 179.97438 * 10 9 7 12 12 O 1.21289 * 119.99971 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99991 * 179.97438 * 11 10 9 14 14 C 1.46505 * 120.00194 * 179.97438 * 13 11 10 15 15 H 1.08999 * 110.56472 * 323.78194 * 14 13 11 16 16 C 1.54510 * 110.50813 * 86.45335 * 14 13 11 17 17 C 1.54477 * 104.18108 * 118.57713 * 16 14 13 18 18 O 1.44642 * 104.69773 * 336.19290 * 17 16 14 19 19 C 1.44415 * 105.37338 * 40.34325 * 18 17 16 20 20 H 1.09003 * 110.37369 * 78.39849 * 19 18 17 21 21 C 1.52995 * 110.37805 * 200.73667 * 19 18 17 22 22 C 1.53006 * 117.49862 * 4.00430 * 21 19 18 23 23 C 1.52995 * 117.49936 * 295.38330 * 21 19 18 24 24 H 0.97001 * 119.99602 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47134 * 59.99837 * 10 9 7 26 26 H 1.08998 * 109.47117 * 300.00158 * 10 9 7 27 27 H 0.96994 * 119.99799 * 0.02562 * 13 11 10 28 28 H 1.09002 * 110.51305 * 237.29243 * 16 14 13 29 29 H 1.08994 * 110.51141 * 359.86573 * 16 14 13 30 30 H 1.09006 * 110.37498 * 94.92285 * 17 16 14 31 31 H 1.09000 * 110.37254 * 217.25804 * 17 16 14 32 32 H 1.08999 * 115.55499 * 149.70366 * 21 19 18 33 33 H 1.09006 * 117.49524 * 359.97438 * 22 21 19 34 34 H 1.08991 * 117.50268 * 145.01611 * 22 21 19 35 35 H 1.09003 * 117.50348 * 214.97532 * 23 21 19 36 36 H 1.09004 * 117.49982 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7104 1.3462 0.0006 5 1 1.8917 2.3964 -1.2125 6 1 1.8917 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 16 1.1291 -2.7280 0.0005 10 6 2.5156 -3.8916 0.0005 11 6 1.9871 -5.3028 0.0012 12 8 0.7907 -5.5023 0.0021 13 7 2.8437 -6.3432 0.0008 14 6 2.3299 -7.7152 0.0019 15 1 1.4253 -7.7848 0.6059 16 6 2.0547 -8.1914 -1.4419 17 6 2.9961 -9.4022 -1.6270 18 8 4.0571 -9.1923 -0.6666 19 6 3.4048 -8.6953 0.5221 20 1 2.9383 -9.5144 1.0695 21 6 4.4086 -7.9611 1.4132 22 6 5.8347 -7.7965 0.8840 23 6 5.5486 -8.7824 2.0185 24 1 -0.4849 0.8401 -0.0004 25 1 3.1243 -3.7315 0.8905 26 1 3.1242 -3.7315 -0.8894 27 1 3.8005 -6.1837 0.0004 28 1 1.0140 -8.4964 -1.5517 29 1 2.2987 -7.4053 -2.1564 30 1 2.4673 -10.3306 -1.4105 31 1 3.3964 -9.4201 -2.6406 32 1 3.9980 -7.1501 2.0147 33 1 6.0579 -8.2118 -0.0989 34 1 6.3626 -6.8772 1.1372 35 1 5.8884 -8.5116 3.0182 36 1 5.5834 -9.8459 1.7823 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000372841960.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:12 Heat of formation + Delta-G solvation = -79.694204 kcal Electronic energy + Delta-G solvation = -18572.657597 eV Core-core repulsion = 15568.961842 eV Total energy + Delta-G solvation = -3003.695755 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.49001 -39.86905 -37.37462 -35.54092 -34.58885 -32.37298 -30.70687 -29.27576 -27.65640 -24.64203 -23.27990 -22.70915 -21.82443 -20.87142 -19.89140 -18.11999 -17.92334 -16.90352 -16.86974 -16.65412 -16.43335 -16.20910 -15.77653 -15.47690 -14.85467 -14.53033 -14.41345 -13.89847 -13.32183 -13.16496 -12.94869 -12.90328 -12.85568 -12.59303 -12.44614 -12.24781 -11.94468 -11.71457 -11.18444 -11.16195 -11.11154 -10.97982 -10.69448 -10.28549 -10.12125 -8.67189 -8.35445 -6.13363 1.26106 1.41226 1.46384 1.57744 1.57996 2.22629 2.27551 2.76981 2.87926 2.99015 3.30816 3.46941 3.61514 3.91513 3.96364 4.06379 4.10058 4.14254 4.27283 4.29966 4.43772 4.48876 4.53454 4.66460 4.82568 4.86064 4.91610 5.01724 5.07281 5.25660 5.37426 5.41709 5.43857 5.82073 6.19566 6.46062 7.06231 7.20814 8.74070 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.029666 B = 0.003991 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.624087 B = 7013.546664 C = 7583.960736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.015 3.985 3 Si 0.999 3.001 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.547 4.547 8 H 0.082 0.918 9 S -0.147 6.147 10 C -0.130 4.130 11 C 0.536 3.464 12 O -0.562 6.562 13 N -0.701 5.701 14 C 0.116 3.884 15 H 0.089 0.911 16 C -0.167 4.167 17 C 0.051 3.949 18 O -0.377 6.377 19 C 0.108 3.892 20 H 0.100 0.900 21 C -0.173 4.173 22 C -0.168 4.168 23 C -0.162 4.162 24 H 0.271 0.729 25 H 0.109 0.891 26 H 0.106 0.894 27 H 0.414 0.586 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.114 0.886 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.386 -19.337 0.517 22.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.190 4.190 3 Si 0.820 3.180 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.695 4.695 8 H 0.100 0.900 9 S 0.080 5.920 10 C -0.282 4.282 11 C 0.322 3.678 12 O -0.440 6.440 13 N -0.355 5.355 14 C 0.010 3.990 15 H 0.107 0.893 16 C -0.206 4.206 17 C -0.026 4.026 18 O -0.296 6.296 19 C 0.050 3.950 20 H 0.118 0.882 21 C -0.191 4.191 22 C -0.205 4.205 23 C -0.199 4.199 24 H 0.080 0.920 25 H 0.127 0.873 26 H 0.125 0.875 27 H 0.251 0.749 28 H 0.105 0.895 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.123 0.877 32 H 0.132 0.868 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 10.495 -19.638 0.488 22.272 hybrid contribution 1.430 1.479 -0.063 2.058 sum 11.926 -18.159 0.425 21.729 Atomic orbital electron populations 1.70189 1.07962 1.28561 1.48056 1.26111 0.95949 1.03265 0.93689 0.84909 0.78593 0.76353 0.78112 1.18093 1.19905 1.19878 1.23242 0.95343 0.92060 1.58836 0.90002 1.85538 1.10323 0.99095 1.97036 1.23372 1.03650 0.94502 1.06637 1.20055 0.86258 0.86565 0.74958 1.90687 1.17166 1.86020 1.50080 1.45836 1.10153 1.04393 1.75140 1.22365 0.97943 0.81419 0.97242 0.89263 1.23385 1.01696 0.99287 0.96236 1.23541 0.87976 0.96747 0.94285 1.89148 1.30811 1.85803 1.23862 1.22676 0.90997 0.94366 0.87002 0.88237 1.22280 0.90421 1.03303 1.03129 1.22953 0.96271 1.01798 0.99431 1.22984 1.00793 0.97769 0.98348 0.91974 0.87305 0.87538 0.74851 0.89521 0.91451 0.90118 0.87663 0.86806 0.88238 0.88034 0.87768 0.88393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.92 13.22 21.65 0.29 -55.63 16 2 C 0.01 0.83 5.49 84.86 0.47 1.30 16 3 Si 1.00 43.57 29.55 68.60 2.03 45.59 16 4 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 5 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.55 -31.28 9.50 67.95 0.65 -30.64 16 8 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 9 S -0.15 -8.16 20.57 -56.49 -1.16 -9.33 16 10 C -0.13 -5.20 6.16 71.23 0.44 -4.76 16 11 C 0.54 19.75 7.84 87.66 0.69 20.43 16 12 O -0.56 -25.62 15.58 -3.06 -0.05 -25.67 16 13 N -0.70 -18.38 4.25 -437.72 -1.86 -20.24 16 14 C 0.12 2.64 3.27 46.01 0.15 2.80 16 15 H 0.09 2.31 7.68 -2.39 -0.02 2.29 16 16 C -0.17 -3.46 6.86 31.61 0.22 -3.25 16 17 C 0.05 0.79 7.65 72.48 0.55 1.34 16 18 O -0.38 -6.97 9.78 -148.98 -1.46 -8.43 16 19 C 0.11 1.91 3.61 31.10 0.11 2.02 16 20 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 21 C -0.17 -2.93 4.16 -10.79 -0.04 -2.97 16 22 C -0.17 -2.64 9.66 30.60 0.30 -2.34 16 23 C -0.16 -2.33 10.24 30.59 0.31 -2.01 16 24 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 25 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 26 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 27 H 0.41 9.04 7.12 -92.71 -0.66 8.38 16 28 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.07 1.62 7.96 -2.39 -0.02 1.60 16 30 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.11 2.10 7.69 -2.39 -0.02 2.08 16 33 H 0.10 1.73 7.07 -2.38 -0.02 1.72 16 34 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 Total: -1.00 -72.99 315.61 2.04 -70.95 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: 0.42 Total: 20.83 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: 3.84 Total: -18.08 kcal Atomic # 7 Polarization: -74.30 SS G_CDS: -1.57 Total: -75.87 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -1.50 Total: -34.10 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: -8.16 SS G_CDS: -1.16 Total: -9.33 kcal Total: -72.99 2.04 -70.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000372841960.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.745 kcal (2) G-P(sol) polarization free energy of solvation -72.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds