Wall clock time and date at job start Mon Mar 30 2020 01:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 H 1.09000 * 109.47326 * 15.40835 * 3 2 1 5 5 C 1.52997 * 109.47442 * 255.40215 * 3 2 1 6 6 N 1.46499 * 109.47131 * 135.40065 * 3 2 1 7 7 C 1.46503 * 119.99831 * 60.00300 * 6 3 2 8 8 S 1.65601 * 120.00497 * 239.99806 * 6 3 2 9 9 O 1.42100 * 104.27759 * 333.93522 * 8 6 3 10 10 O 1.42096 * 104.28043 * 206.07123 * 8 6 3 11 11 C 1.81403 * 104.44444 * 89.99934 * 8 6 3 12 12 C 1.53008 * 109.46896 * 183.94443 * 11 8 6 13 13 C 1.50697 * 115.54978 * 294.79623 * 12 11 8 14 14 H 1.08001 * 120.00201 * 95.18498 * 13 12 11 15 15 C 1.37887 * 119.99752 * 274.90817 * 13 12 11 16 16 N 1.31505 * 119.99878 * 6.54927 * 15 13 12 17 17 Si 1.86796 * 119.99642 * 186.54775 * 15 13 12 18 18 H 1.48497 * 109.47382 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47206 * 120.00249 * 17 15 13 20 20 H 1.48498 * 109.47059 * 240.00015 * 17 15 13 21 21 C 1.52993 * 117.49430 * 80.46365 * 12 11 8 22 22 C 1.52998 * 117.49824 * 149.12436 * 12 11 8 23 23 H 4.18738 * 15.03923 * 359.97438 * 4 2 1 24 24 H 1.09008 * 109.46867 * 60.00210 * 5 3 2 25 25 H 1.09001 * 109.47637 * 179.97438 * 5 3 2 26 26 H 1.09000 * 109.47366 * 300.00595 * 5 3 2 27 27 H 1.08997 * 109.47144 * 269.99786 * 7 6 3 28 28 H 1.09006 * 109.47177 * 29.99702 * 7 6 3 29 29 H 1.09003 * 109.47180 * 149.99933 * 7 6 3 30 30 H 1.08999 * 109.47016 * 63.95428 * 11 8 6 31 31 H 1.08994 * 109.47560 * 303.94530 * 11 8 6 32 32 H 0.97008 * 119.99874 * 185.03983 * 16 15 13 33 33 H 1.09000 * 117.49990 * 215.00055 * 21 12 11 34 34 H 1.08995 * 117.50454 * 0.02562 * 21 12 11 35 35 H 1.09005 * 117.49656 * 359.97438 * 22 12 11 36 36 H 1.08996 * 117.50008 * 144.97690 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0098 -0.9899 -0.2730 5 6 3.1559 0.3644 1.3959 6 7 3.1338 0.9843 -0.9698 7 6 2.7793 2.3980 -0.8208 8 16 4.0862 0.4985 -2.2345 9 8 4.7168 -0.6848 -1.7639 10 8 4.8468 1.6526 -2.5641 11 6 2.9122 0.1094 -3.5615 12 6 3.6715 -0.4502 -4.7663 13 6 4.6147 0.5103 -5.4435 14 1 5.6618 0.5161 -5.1789 15 6 4.1419 1.3781 -6.4052 16 7 2.8505 1.4587 -6.6403 17 14 5.3357 2.4390 -7.3738 18 1 6.7230 2.1615 -6.9227 19 1 5.2143 2.1264 -8.8205 20 1 5.0190 3.8723 -7.1489 21 6 4.0757 -1.9252 -4.7234 22 6 2.9453 -1.4676 -5.6486 23 1 -1.0500 -0.0011 0.0002 24 1 2.7929 -0.3676 2.1175 25 1 4.2459 0.3645 1.3960 26 1 2.7920 1.3550 1.6689 27 1 1.8524 2.5987 -1.3579 28 1 2.6443 2.6293 0.2359 29 1 3.5775 3.0178 -1.2293 30 1 2.3824 1.0156 -3.8551 31 1 2.1959 -0.6318 -3.2073 32 1 2.5233 2.0138 -7.3654 33 1 5.0238 -2.2009 -5.1851 34 1 3.8004 -2.4970 -3.8373 35 1 1.9267 -1.7385 -5.3705 36 1 3.1494 -1.4419 -6.7190 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491252121.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:16 Heat of formation + Delta-G solvation = 10.898740 kcal Electronic energy + Delta-G solvation = -19644.192227 eV Core-core repulsion = 16644.424877 eV Total energy + Delta-G solvation = -2999.767350 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -37.42494 -36.75625 -36.33076 -35.11334 -32.66127 -32.03641 -30.15454 -28.15743 -26.39481 -25.43000 -23.14308 -21.21309 -19.62823 -18.65885 -17.93281 -17.26686 -16.47585 -15.75142 -15.23558 -14.73513 -14.52218 -14.25474 -13.92465 -13.71872 -13.15135 -12.79947 -12.33401 -12.27049 -11.92591 -11.82214 -11.66944 -11.31215 -11.16060 -11.10801 -11.02723 -10.92496 -10.57371 -10.46639 -10.39777 -10.20730 -10.11755 -9.72582 -9.00250 -8.92527 -8.55045 -8.07909 -6.14262 -4.24590 0.98998 2.66850 2.83453 3.28908 3.37313 3.44526 3.47517 4.25235 4.38438 4.57955 4.84513 4.94628 5.13759 5.17410 5.19446 5.30300 5.58611 5.60135 5.72642 5.76131 5.88752 5.97719 6.02981 6.13542 6.22916 6.29704 6.39170 6.62210 6.71462 6.79167 6.99449 7.24552 7.39230 7.59585 7.80619 8.20188 8.81955 9.47113 10.94170 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.023929 B = 0.006768 C = 0.006403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.827966 B = 4136.117475 C = 4371.864795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.192 4.192 3 C 0.252 3.748 4 H 0.120 0.880 5 C -0.153 4.153 6 N -1.006 6.006 7 C 0.084 3.916 8 S 2.604 3.396 9 O -0.971 6.971 10 O -0.943 6.943 11 C -0.551 4.551 12 C 0.041 3.959 13 C -0.512 4.512 14 H 0.069 0.931 15 C 0.080 3.920 16 N -0.874 5.874 17 Si 0.891 3.109 18 H -0.268 1.268 19 H -0.283 1.283 20 H -0.281 1.281 21 C -0.209 4.209 22 C -0.140 4.140 23 H 0.217 0.783 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.133 0.867 31 H 0.097 0.903 32 H 0.262 0.738 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.699 -1.375 12.290 13.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.194 4.194 3 C 0.146 3.854 4 H 0.138 0.862 5 C -0.211 4.211 6 N -0.840 5.840 7 C -0.061 4.061 8 S 2.702 3.298 9 O -0.961 6.961 10 O -0.933 6.933 11 C -0.684 4.684 12 C 0.039 3.961 13 C -0.549 4.549 14 H 0.087 0.913 15 C -0.124 4.124 16 N -0.510 5.510 17 Si 0.718 3.282 18 H -0.192 1.192 19 H -0.209 1.209 20 H -0.206 1.206 21 C -0.246 4.246 22 C -0.179 4.179 23 H 0.234 0.766 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.106 0.894 30 H 0.151 0.849 31 H 0.115 0.885 32 H 0.072 0.928 33 H 0.105 0.895 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.850 -1.214 12.283 12.930 hybrid contribution -0.665 0.587 -0.891 1.257 sum -4.516 -0.627 11.393 12.271 Atomic orbital electron populations 1.24914 0.95814 1.00285 1.00079 1.23531 0.94644 1.00584 1.00645 1.17718 0.83279 0.93739 0.90701 0.86245 1.22061 1.02193 1.02326 0.94549 1.58023 1.69954 1.13769 1.42288 1.21508 1.01437 0.80578 1.02604 1.05372 0.75860 0.74253 0.74270 1.93483 1.73228 1.49911 1.79495 1.93527 1.66960 1.49452 1.83373 1.30008 1.13900 1.10514 1.14025 1.18315 0.97567 0.87414 0.92803 1.20589 0.94061 1.17664 1.22624 0.91274 1.24949 0.95070 0.95677 0.96754 1.70024 1.12283 1.39135 1.29532 0.86532 0.81902 0.80362 0.79388 1.19190 1.20863 1.20648 1.23208 0.99966 0.99597 1.01848 1.22540 0.93851 1.04229 0.97308 0.76606 0.91249 0.90931 0.91811 0.93041 0.91235 0.89421 0.84885 0.88472 0.92835 0.89462 0.90691 0.91570 0.89522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.22 19.25 29.55 0.57 -1.65 16 2 C -0.19 -2.56 12.34 -37.12 -0.46 -3.01 16 3 C 0.25 3.51 3.03 -70.72 -0.21 3.29 16 4 H 0.12 1.70 6.87 -51.93 -0.36 1.34 16 5 C -0.15 -1.70 9.13 37.16 0.34 -1.36 16 6 N -1.01 -16.18 2.98 -117.63 -0.35 -16.53 16 7 C 0.08 1.18 9.98 59.85 0.60 1.78 16 8 S 2.60 53.58 5.17 -107.50 -0.56 53.02 16 9 O -0.97 -20.99 16.57 -57.54 -0.95 -21.94 16 10 O -0.94 -22.42 16.12 -57.54 -0.93 -23.35 16 11 C -0.55 -11.92 6.03 37.16 0.22 -11.69 16 12 C 0.04 1.02 1.33 -155.66 -0.21 0.81 16 13 C -0.51 -14.12 8.09 -34.44 -0.28 -14.40 16 14 H 0.07 1.95 7.82 -52.49 -0.41 1.54 16 15 C 0.08 2.20 5.39 -17.82 -0.10 2.11 16 16 N -0.87 -24.23 12.93 55.43 0.72 -23.52 16 17 Si 0.89 21.48 29.55 -169.99 -5.02 16.46 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 C -0.21 -4.62 9.96 -26.70 -0.27 -4.89 16 22 C -0.14 -3.23 9.44 -26.69 -0.25 -3.48 16 23 H 0.22 1.70 7.80 -54.09 -0.42 1.28 16 24 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 25 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.06 0.65 6.66 -51.93 -0.35 0.30 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.78 6.43 -51.93 -0.33 0.45 16 29 H 0.09 1.31 6.91 -51.93 -0.36 0.95 16 30 H 0.13 3.02 8.14 -51.92 -0.42 2.59 16 31 H 0.10 1.83 8.09 -51.93 -0.42 1.41 16 32 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 33 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 34 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.09 2.09 8.14 -51.93 -0.42 1.67 16 LS Contribution 322.65 15.07 4.86 4.86 Total: -1.00 -32.14 322.65 -7.44 -39.58 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -5.17 Total: 3.90 kcal Atomic # 6 Polarization: -32.45 SS G_CDS: -0.04 Total: -32.49 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 0.37 Total: -40.05 kcal Atomic # 8 Polarization: -43.40 SS G_CDS: -1.88 Total: -45.28 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 53.58 SS G_CDS: -0.56 Total: 53.02 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.14 -7.44 -39.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491252121.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.481 kcal (2) G-P(sol) polarization free energy of solvation -32.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds