Wall clock time and date at job start Mon Mar 30 2020 01:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34173 * 127.02175 * 2 1 4 4 O 1.34220 * 109.13315 * 179.97438 * 3 2 1 5 5 C 1.33659 * 110.91130 * 359.74627 * 4 3 2 6 6 C 1.36460 * 108.38817 * 0.41148 * 5 4 3 7 7 C 1.47330 * 127.19175 * 179.87181 * 6 5 4 8 8 O 1.21626 * 119.99400 * 179.68619 * 7 6 5 9 9 N 1.34772 * 120.00518 * 359.68640 * 7 6 5 10 10 C 1.39135 * 120.00101 * 184.28249 * 9 7 6 11 11 C 1.39519 * 119.83279 * 144.68791 * 10 9 7 12 12 C 1.36357 * 120.16234 * 180.27726 * 11 10 9 13 13 C 1.40879 * 119.83493 * 359.47836 * 12 11 10 14 14 C 1.41142 * 120.16381 * 180.24670 * 13 12 11 15 15 H 1.07994 * 120.00132 * 215.03407 * 14 13 12 16 16 C 1.39901 * 119.99591 * 35.04629 * 14 13 12 17 17 N 1.30877 * 120.00278 * 355.53887 * 16 14 13 18 18 Si 1.86795 * 119.99875 * 175.54682 * 16 14 13 19 19 H 1.48502 * 109.47662 * 59.99420 * 18 16 14 20 20 H 1.48504 * 109.47564 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47069 * 299.99441 * 18 16 14 22 22 C 1.40874 * 119.67328 * 0.54281 * 13 12 11 23 23 C 1.36365 * 119.83442 * 359.70872 * 22 13 12 24 24 H 1.09005 * 109.46955 * 270.04098 * 1 2 3 25 25 H 1.08992 * 109.47439 * 30.03715 * 1 2 3 26 26 H 1.09001 * 109.47206 * 150.04427 * 1 2 3 27 27 H 1.08004 * 125.43485 * 359.93892 * 3 2 1 28 28 H 1.07997 * 125.80655 * 180.30617 * 5 4 3 29 29 H 0.97000 * 119.99835 * 4.28484 * 9 7 6 30 30 H 1.07994 * 119.91233 * 0.02562 * 11 10 9 31 31 H 1.08001 * 120.08137 * 179.72605 * 12 11 10 32 32 H 0.96997 * 120.00409 * 180.02562 * 17 16 14 33 33 H 1.08004 * 120.08725 * 179.68101 * 22 13 12 34 34 H 1.07997 * 119.92012 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0712 0.0000 4 8 3.5922 0.6590 0.0006 5 6 3.6626 -0.6758 0.0065 6 6 2.3923 -1.1739 0.0007 7 6 1.9916 -2.5917 0.0014 8 8 0.8126 -2.8904 0.0015 9 7 2.9314 -3.5577 0.0020 10 6 2.5554 -4.8943 -0.0873 11 6 3.3547 -5.7945 -0.7924 12 6 2.9897 -7.1048 -0.8890 13 6 1.8078 -7.5509 -0.2653 14 6 1.4261 -8.9066 -0.3564 15 1 0.3806 -9.1703 -0.4176 16 6 2.4021 -9.9089 -0.3671 17 7 3.6706 -9.5869 -0.3809 18 14 1.8949 -11.7066 -0.3621 19 1 1.0736 -11.9927 -1.5658 20 1 3.1078 -12.5634 -0.3759 21 1 1.0999 -11.9932 0.8591 22 6 1.0057 -6.6358 0.4445 23 6 1.3808 -5.3275 0.5282 24 1 -0.3633 0.0007 1.0277 25 1 -0.3634 0.8896 -0.5144 26 1 -0.3634 -0.8904 -0.5131 27 1 1.9893 2.1011 -0.0009 28 1 4.5706 -1.2605 0.0129 29 1 3.8700 -3.3210 0.0647 30 1 4.2626 -5.4519 -1.2662 31 1 3.6071 -7.7996 -1.4388 32 1 4.3473 -10.2818 -0.3887 33 1 0.0956 -6.9696 0.9208 34 1 0.7666 -4.6247 1.0716 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705282858.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:56 Heat of formation + Delta-G solvation = -2.637347 kcal Electronic energy + Delta-G solvation = -19352.743250 eV Core-core repulsion = 16216.944980 eV Total energy + Delta-G solvation = -3135.798270 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.59151 -39.46483 -37.19946 -34.50368 -33.78692 -32.99500 -30.76048 -29.55783 -28.69588 -27.24811 -25.25454 -23.29463 -21.46069 -20.93619 -20.23667 -19.49763 -17.95819 -17.29080 -16.30202 -16.24372 -15.77123 -15.15717 -14.83511 -14.42795 -13.91068 -13.53351 -13.32113 -13.10023 -12.90572 -12.64713 -12.50833 -12.15246 -11.75606 -11.53263 -11.38973 -11.14244 -10.97230 -10.52590 -10.11165 -9.83516 -9.51907 -9.34346 -9.16839 -8.76616 -8.75285 -7.55580 -6.88390 -6.62961 -4.34403 1.35032 1.99585 2.70378 2.86241 3.08151 3.09747 3.11538 3.17319 3.64125 3.77238 3.97746 4.47427 4.64242 4.70743 5.03947 5.31632 5.39882 5.64657 5.71525 5.83369 5.87393 6.01752 6.18578 6.41497 6.48978 6.73802 6.87117 6.94102 7.06495 7.20127 7.29277 7.63674 7.73878 7.87268 8.06282 8.24518 8.31172 8.61613 8.74123 8.92203 8.99534 10.28473 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.050175 B = 0.003577 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.912072 B = 7826.237315 C = 8299.490699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.132 4.132 3 C -0.053 4.053 4 O -0.175 6.175 5 C 0.012 3.988 6 C -0.222 4.222 7 C 0.569 3.431 8 O -0.525 6.525 9 N -0.646 5.646 10 C 0.003 3.997 11 C -0.119 4.119 12 C -0.141 4.141 13 C 0.102 3.898 14 C -0.462 4.462 15 H 0.076 0.924 16 C 0.070 3.930 17 N -0.813 5.813 18 Si 0.916 3.084 19 H -0.266 1.266 20 H -0.279 1.279 21 H -0.266 1.266 22 C -0.206 4.206 23 C -0.084 4.084 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.084 0.916 27 H 0.205 0.795 28 H 0.210 0.790 29 H 0.392 0.608 30 H 0.091 0.909 31 H 0.132 0.868 32 H 0.278 0.722 33 H 0.096 0.904 34 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.998 15.153 0.498 15.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.134 4.134 3 C -0.119 4.119 4 O -0.071 6.071 5 C -0.058 4.058 6 C -0.226 4.226 7 C 0.357 3.643 8 O -0.402 6.402 9 N -0.289 5.289 10 C -0.089 4.089 11 C -0.140 4.140 12 C -0.161 4.161 13 C 0.099 3.901 14 C -0.493 4.493 15 H 0.094 0.906 16 C -0.145 4.145 17 N -0.440 5.440 18 Si 0.741 3.259 19 H -0.190 1.190 20 H -0.204 1.204 21 H -0.191 1.191 22 C -0.226 4.226 23 C -0.104 4.104 24 H 0.088 0.912 25 H 0.081 0.919 26 H 0.103 0.897 27 H 0.222 0.778 28 H 0.227 0.773 29 H 0.226 0.774 30 H 0.109 0.891 31 H 0.149 0.851 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.614 15.028 0.478 15.122 hybrid contribution 0.371 -0.812 0.108 0.899 sum 1.985 14.217 0.586 14.367 Atomic orbital electron populations 1.20241 0.88383 1.03220 1.02551 1.21453 0.97342 0.90450 1.04117 1.23662 0.79797 0.99569 1.08859 1.83756 1.29586 1.22426 1.71290 1.24428 0.98914 0.81017 1.01480 1.21606 0.93238 0.94676 1.13129 1.17257 0.85993 0.83364 0.77679 1.90744 1.17266 1.82731 1.49498 1.42814 1.08679 1.05354 1.72028 1.17240 1.00594 0.81499 1.09564 1.20323 0.98923 0.94506 1.00206 1.21184 0.99814 0.93151 1.01946 1.17722 0.91295 0.92745 0.88327 1.19478 0.94244 0.90715 1.44824 0.90615 1.25872 0.94552 1.01548 0.92491 1.69754 1.00776 1.35303 1.38202 0.86244 0.78720 0.81144 0.79799 1.19048 1.20444 1.19095 1.20829 1.02634 0.93416 1.05693 1.20422 0.95743 0.95511 0.98709 0.91245 0.91938 0.89671 0.77794 0.77305 0.77410 0.89085 0.85058 0.91105 0.88554 0.87378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.05 10.00 36.00 0.36 -0.69 16 2 C -0.13 -1.71 6.37 -102.49 -0.65 -2.36 16 3 C -0.05 -0.54 11.96 29.30 0.35 -0.19 16 4 O -0.18 -1.90 10.52 7.62 0.08 -1.82 16 5 C 0.01 0.13 11.61 30.09 0.35 0.48 16 6 C -0.22 -3.21 6.31 -103.28 -0.65 -3.87 16 7 C 0.57 10.43 7.64 -12.56 -0.10 10.33 16 8 O -0.52 -11.46 12.82 5.25 0.07 -11.40 16 9 N -0.65 -11.53 5.29 -10.73 -0.06 -11.59 16 10 C 0.00 0.07 6.30 -83.60 -0.53 -0.46 16 11 C -0.12 -2.72 9.90 -39.78 -0.39 -3.11 16 12 C -0.14 -3.62 8.61 -39.26 -0.34 -3.96 16 13 C 0.10 2.73 5.55 -106.80 -0.59 2.14 16 14 C -0.46 -12.36 9.02 -37.86 -0.34 -12.70 16 15 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 16 C 0.07 1.77 5.42 -17.34 -0.09 1.68 16 17 N -0.81 -20.92 10.61 55.55 0.59 -20.33 16 18 Si 0.92 18.95 29.56 -169.99 -5.03 13.93 16 19 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 20 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 21 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 22 C -0.21 -5.24 9.74 -39.26 -0.38 -5.63 16 23 C -0.08 -2.03 8.61 -39.78 -0.34 -2.37 16 24 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.08 1.26 6.91 -51.93 -0.36 0.90 16 27 H 0.21 1.24 8.06 -52.48 -0.42 0.81 16 28 H 0.21 1.49 7.48 -52.49 -0.39 1.09 16 29 H 0.39 5.38 7.80 -40.82 -0.32 5.06 16 30 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 31 H 0.13 3.48 6.15 -52.49 -0.32 3.15 16 32 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 33 H 0.10 2.33 8.06 -52.48 -0.42 1.91 16 34 H 0.11 2.59 6.22 -52.49 -0.33 2.26 16 LS Contribution 298.34 15.07 4.50 4.50 Total: -1.00 -31.32 298.34 -6.58 -37.90 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -3.38 Total: 9.53 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: -3.35 Total: -20.71 kcal Atomic # 7 Polarization: -32.45 SS G_CDS: 0.53 Total: -31.92 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.15 Total: -13.22 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.32 -6.58 -37.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705282858.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.259 kcal (2) G-P(sol) polarization free energy of solvation -31.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds