Wall clock time and date at job start Mon Mar 30 2020 00:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86800 * 119.99823 * 2 1 4 4 H 1.48497 * 109.47050 * 240.00003 * 3 2 1 5 5 H 1.48496 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46492 * 119.99978 * 3 2 1 7 7 C 1.38820 * 119.99928 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99634 * 179.72412 * 7 2 1 9 9 O 1.34834 * 120.00105 * 359.97438 * 7 2 1 10 10 C 1.34841 * 116.99852 * 179.73038 * 9 7 2 11 11 O 1.21614 * 120.00052 * 359.97438 * 10 9 7 12 12 C 1.46812 * 119.99763 * 180.02562 * 10 9 7 13 13 C 1.36032 * 125.44151 * 179.71791 * 12 10 9 14 14 C 1.41539 * 107.71972 * 179.84581 * 13 12 10 15 15 C 1.40913 * 106.97572 * 0.41095 * 14 13 12 16 16 C 1.39169 * 119.42892 * 179.76866 * 15 14 13 17 17 C 1.37727 * 119.81510 * 0.02562 * 16 15 14 18 18 C 1.38904 * 120.65019 * 359.97370 * 17 16 15 19 19 C 1.36467 * 120.61865 * 0.02562 * 18 17 16 20 20 C 1.50693 * 120.08716 * 180.02562 * 19 18 17 21 21 C 1.52998 * 117.49883 * 8.63214 * 20 19 18 22 22 C 1.52997 * 117.50406 * 300.00517 * 20 19 18 23 23 N 1.37512 * 107.40773 * 359.75083 * 15 14 13 24 24 H 0.96995 * 125.61158 * 180.02562 * 23 15 14 25 25 H 0.96995 * 120.00048 * 0.02562 * 1 2 3 26 26 H 1.07992 * 126.14174 * 359.96395 * 13 12 10 27 27 H 1.08000 * 120.09440 * 179.97438 * 16 15 14 28 28 H 1.07998 * 119.67416 * 179.97438 * 17 16 15 29 29 H 1.07998 * 119.68711 * 180.02562 * 18 17 16 30 30 H 1.09010 * 115.55038 * 154.33480 * 20 19 18 31 31 H 1.09000 * 117.50038 * 359.97438 * 21 20 19 32 32 H 1.09003 * 117.49940 * 145.02313 * 21 20 19 33 33 H 1.09001 * 117.50252 * 214.97666 * 22 20 19 34 34 H 1.08998 * 117.49450 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1019 1.6963 1.2126 7 6 2.0083 -1.2022 -0.0005 8 1 3.0882 -1.2022 -0.0050 9 8 1.3341 -2.3699 -0.0005 10 6 2.0685 -3.5008 -0.0067 11 8 3.2830 -3.4371 -0.0125 12 6 1.4020 -4.8089 -0.0077 13 6 2.0313 -6.0148 -0.0191 14 6 1.0354 -7.0205 -0.0121 15 6 -0.2117 -6.3645 -0.0058 16 6 -1.3812 -7.1189 -0.0030 17 6 -1.3088 -8.4943 -0.0059 18 6 -0.0783 -9.1387 -0.0122 19 6 1.0822 -8.4207 -0.0151 20 6 2.4106 -9.1322 -0.0225 21 6 2.3991 -10.6479 -0.2303 22 6 2.7179 -10.0672 1.1489 23 7 0.0351 -5.0117 -0.0032 24 1 -0.6393 -4.3146 0.0015 25 1 -0.4850 0.8400 -0.0004 26 1 3.0991 -6.1760 -0.0295 27 1 -2.3428 -6.6273 0.0023 28 1 -2.2178 -9.0775 -0.0034 29 1 -0.0397 -10.2180 -0.0149 30 1 3.2418 -8.5715 -0.4504 31 1 1.4306 -11.1306 -0.3611 32 1 3.2227 -11.0848 -0.7949 33 1 3.7513 -10.1220 1.4915 34 1 1.9590 -10.1680 1.9247 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870083840.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:30 Heat of formation + Delta-G solvation = -18.787167 kcal Electronic energy + Delta-G solvation = -19422.353278 eV Core-core repulsion = 16285.854700 eV Total energy + Delta-G solvation = -3136.498579 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.60950 -40.90581 -39.08238 -37.43237 -36.71326 -34.41915 -32.98939 -30.66174 -29.94480 -27.82536 -25.50411 -24.19712 -23.26271 -22.45316 -21.37704 -21.13773 -20.03340 -19.36801 -18.09032 -16.99365 -16.92327 -16.86490 -16.31177 -16.21623 -15.59273 -15.41012 -14.90811 -14.76158 -14.46770 -13.95489 -13.68610 -13.34374 -13.30870 -12.85230 -12.70080 -12.47931 -12.23630 -12.16232 -12.08379 -11.79284 -11.52318 -11.43920 -11.20117 -10.79305 -10.58835 -9.27819 -8.66442 -8.65374 -6.42647 -0.31837 0.64539 0.97393 1.31016 1.42604 1.47337 1.87793 2.07590 2.14399 2.59376 2.73684 2.91661 3.23180 3.54901 3.91915 4.04615 4.09690 4.13969 4.24328 4.26593 4.39649 4.50593 4.58185 4.80708 4.90209 4.93092 5.01453 5.05974 5.14877 5.21079 5.32978 5.53167 5.59626 5.65678 5.69786 5.75763 6.12115 6.41448 6.43505 6.78928 7.55372 8.54614 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.034013 B = 0.004039 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.011332 B = 6930.628420 C = 7674.525072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.000 4.000 3 Si 1.021 2.979 4 H -0.260 1.260 5 H -0.257 1.257 6 H -0.260 1.260 7 C -0.423 4.423 8 H 0.087 0.913 9 O -0.232 6.232 10 C 0.455 3.545 11 O -0.565 6.565 12 C 0.033 3.967 13 C -0.114 4.114 14 C -0.133 4.133 15 C 0.102 3.898 16 C -0.149 4.149 17 C -0.071 4.071 18 C -0.154 4.154 19 C 0.000 4.000 20 C -0.145 4.145 21 C -0.156 4.156 22 C -0.164 4.164 23 N -0.567 5.567 24 H 0.427 0.573 25 H 0.282 0.718 26 H 0.153 0.847 27 H 0.141 0.859 28 H 0.165 0.835 29 H 0.154 0.846 30 H 0.102 0.898 31 H 0.114 0.886 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.980 -19.363 0.326 19.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.201 4.201 3 Si 0.839 3.161 4 H -0.185 1.185 5 H -0.181 1.181 6 H -0.184 1.184 7 C -0.499 4.499 8 H 0.104 0.896 9 O -0.140 6.140 10 C 0.304 3.696 11 O -0.463 6.463 12 C -0.075 4.075 13 C -0.141 4.141 14 C -0.138 4.138 15 C -0.009 4.009 16 C -0.169 4.169 17 C -0.091 4.091 18 C -0.173 4.173 19 C 0.000 4.000 20 C -0.163 4.163 21 C -0.192 4.192 22 C -0.201 4.201 23 N -0.171 5.171 24 H 0.266 0.734 25 H 0.092 0.908 26 H 0.171 0.829 27 H 0.159 0.841 28 H 0.183 0.817 29 H 0.172 0.828 30 H 0.120 0.880 31 H 0.132 0.868 32 H 0.127 0.873 33 H 0.122 0.878 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.933 -19.005 0.326 19.232 hybrid contribution 0.261 1.687 -0.020 1.707 sum -2.672 -17.318 0.306 17.525 Atomic orbital electron populations 1.70027 1.07682 1.29891 1.45574 1.26620 0.96974 1.02310 0.94203 0.84634 0.77645 0.73829 0.79959 1.18455 1.18097 1.18446 1.21523 0.92550 0.80652 1.55135 0.89563 1.83914 1.39898 1.14012 1.76192 1.20424 0.85751 0.84915 0.78516 1.90647 1.15379 1.87756 1.52550 1.19129 0.83714 0.91453 1.13240 1.20885 0.99726 0.88781 1.04682 1.18071 0.91636 0.93810 1.10247 1.18813 0.96797 0.82223 1.03067 1.20426 0.95017 0.94333 1.07170 1.21273 0.99085 0.92449 0.96251 1.20853 0.90945 1.01150 1.04325 1.18610 0.95173 0.89356 0.96904 1.21010 0.95597 0.93275 1.06436 1.23196 1.04526 0.92576 0.98937 1.23098 1.03283 1.01856 0.91854 1.42047 1.05713 1.06841 1.62501 0.73364 0.90813 0.82932 0.84095 0.81709 0.82824 0.88032 0.86795 0.87276 0.87790 0.88301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.04 13.67 21.64 0.30 -51.75 16 2 C 0.00 0.02 5.50 84.89 0.47 0.48 16 3 Si 1.02 43.00 29.55 68.60 2.03 45.03 16 4 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 5 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 6 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 7 C -0.42 -25.95 9.65 67.96 0.66 -25.30 16 8 H 0.09 5.34 6.86 -2.91 -0.02 5.32 16 9 O -0.23 -14.00 9.75 10.43 0.10 -13.90 16 10 C 0.45 24.93 7.88 70.06 0.55 25.48 16 11 O -0.57 -33.04 16.09 19.46 0.31 -32.73 16 12 C 0.03 1.48 6.99 39.87 0.28 1.76 16 13 C -0.11 -4.47 10.27 22.57 0.23 -4.23 16 14 C -0.13 -4.45 5.99 -21.36 -0.13 -4.58 16 15 C 0.10 3.35 7.25 39.13 0.28 3.63 16 16 C -0.15 -3.67 10.08 22.37 0.23 -3.45 16 17 C -0.07 -1.36 10.02 22.31 0.22 -1.13 16 18 C -0.15 -3.08 9.24 22.02 0.20 -2.87 16 19 C 0.00 0.01 5.62 -19.83 -0.11 -0.10 16 20 C -0.14 -3.15 5.92 -11.54 -0.07 -3.22 16 21 C -0.16 -2.27 9.85 30.59 0.30 -1.96 16 22 C -0.16 -2.78 10.16 30.59 0.31 -2.46 16 23 N -0.57 -21.88 6.19 -177.23 -1.10 -22.98 16 24 H 0.43 15.95 8.96 -92.71 -0.83 15.12 16 25 H 0.28 14.83 8.31 -92.71 -0.77 14.06 16 26 H 0.15 5.68 8.06 -2.91 -0.02 5.66 16 27 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 28 H 0.17 1.83 8.06 -2.91 -0.02 1.81 16 29 H 0.15 2.05 5.97 -2.91 -0.02 2.03 16 30 H 0.10 2.42 8.07 -2.38 -0.02 2.40 16 31 H 0.11 1.29 6.18 -2.39 -0.01 1.28 16 32 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -73.59 303.91 5.39 -68.21 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: 0.32 Total: 26.09 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: 3.43 Total: -17.97 kcal Atomic # 7 Polarization: -73.92 SS G_CDS: -0.80 Total: -74.72 kcal Atomic # 8 Polarization: -47.05 SS G_CDS: 0.41 Total: -46.63 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -73.59 5.39 -68.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870083840.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.420 kcal (2) G-P(sol) polarization free energy of solvation -73.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds