Wall clock time and date at job start Mon Mar 30 2020 00:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 120.00084 * 2 1 4 4 H 1.48506 * 109.47056 * 270.00056 * 3 2 1 5 5 H 1.48501 * 109.47403 * 29.99937 * 3 2 1 6 6 H 1.48493 * 109.47309 * 150.00196 * 3 2 1 7 7 C 1.37877 * 119.99589 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00411 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99669 * 179.97438 * 7 2 1 10 10 C 1.53935 * 113.73364 * 81.23515 * 9 7 2 11 11 N 1.48296 * 86.06285 * 138.12975 * 10 9 7 12 12 C 1.46902 * 111.00409 * 222.41947 * 11 10 9 13 13 C 1.50702 * 109.47215 * 269.34877 * 12 11 10 14 14 C 1.38451 * 120.01374 * 269.73061 * 13 12 11 15 15 F 1.35095 * 119.99222 * 359.97438 * 14 13 12 16 16 C 1.38433 * 120.01859 * 179.74251 * 14 13 12 17 17 C 1.38241 * 120.04134 * 0.50550 * 16 14 13 18 18 C 1.38355 * 120.02605 * 359.77084 * 17 16 14 19 19 F 1.35108 * 120.01324 * 179.97438 * 18 17 16 20 20 C 1.38358 * 120.01017 * 90.00279 * 13 12 11 21 21 F 1.35103 * 120.01788 * 0.02562 * 20 13 12 22 22 C 1.47961 * 90.75572 * 335.31010 * 11 10 9 23 23 H 0.96995 * 119.99785 * 359.97438 * 1 2 3 24 24 H 1.09002 * 112.93816 * 309.66794 * 9 7 2 25 25 H 1.09001 * 113.76001 * 252.50560 * 10 9 7 26 26 H 1.09000 * 113.75996 * 23.86376 * 10 9 7 27 27 H 1.09001 * 109.47358 * 29.35236 * 12 11 10 28 28 H 1.09004 * 109.47314 * 149.35402 * 12 11 10 29 29 H 1.08001 * 119.98023 * 180.23255 * 16 14 13 30 30 H 1.08004 * 119.98830 * 179.74813 * 17 16 14 31 31 H 1.09007 * 113.75652 * 270.36911 * 22 11 10 32 32 H 1.08993 * 113.76177 * 139.00817 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.1317 -0.9797 1.3914 11 7 5.0990 -2.0373 1.0109 12 6 5.3317 -2.9643 2.1266 13 6 6.4922 -2.4739 2.9535 14 6 7.7794 -2.8861 2.6535 15 9 7.9951 -3.7286 1.6197 16 6 8.8461 -2.4315 3.4097 17 6 8.6261 -1.5739 4.4714 18 6 7.3400 -1.1653 4.7763 19 9 7.1252 -0.3275 5.8142 20 6 6.2711 -1.6159 4.0162 21 9 5.0147 -1.2178 4.3133 22 6 4.1311 -2.6025 0.0450 23 1 -0.4849 0.8400 0.0004 24 1 3.9361 -0.5532 -0.7738 25 1 4.5830 0.0035 1.5245 26 1 3.4736 -1.2616 2.2133 27 1 4.4382 -3.0155 2.7488 28 1 5.5585 -3.9556 1.7342 29 1 9.8504 -2.7505 3.1729 30 1 9.4586 -1.2229 5.0633 31 1 3.4728 -3.3581 0.4740 32 1 4.5821 -2.9150 -0.8968 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137925565.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:05 Heat of formation + Delta-G solvation = -71.495124 kcal Electronic energy + Delta-G solvation = -20667.263090 eV Core-core repulsion = 16986.622182 eV Total energy + Delta-G solvation = -3680.640908 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.56251 -49.07614 -48.63365 -39.38049 -38.42290 -33.22945 -32.15313 -30.15084 -29.01377 -26.03747 -25.27042 -23.28017 -22.99499 -21.23857 -18.71522 -18.35888 -17.97371 -17.47204 -16.98374 -16.57744 -15.98908 -15.59410 -15.21430 -14.89989 -14.85571 -14.65528 -14.48432 -14.15473 -13.62215 -13.22980 -13.18723 -12.64476 -12.32342 -11.90637 -11.87630 -11.76478 -11.25922 -11.01291 -10.41132 -10.02722 -9.99325 -9.77226 -9.18551 -9.02439 -8.75477 -8.58159 -8.15885 -6.11475 -4.12059 0.59701 0.64516 2.95816 3.29376 3.38072 3.42329 3.51111 3.85898 4.21547 4.25478 4.41510 4.42685 4.60311 4.82085 5.15786 5.22080 5.40276 5.49666 5.58951 5.69680 5.72282 5.78638 5.91116 6.07806 6.27676 6.39689 6.43983 6.50032 6.71370 6.91342 7.32999 7.66429 7.72454 8.46618 8.91066 9.51427 11.01053 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.022753 B = 0.005890 C = 0.005104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.318903 B = 4752.798654 C = 5484.166862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.075 3.925 3 Si 0.872 3.128 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.255 1.255 7 C -0.514 4.514 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.007 4.007 11 N -0.485 5.485 12 C 0.055 3.945 13 C -0.107 4.107 14 C 0.135 3.865 15 F -0.121 7.121 16 C -0.139 4.139 17 C -0.104 4.104 18 C 0.054 3.946 19 F -0.126 7.126 20 C 0.106 3.894 21 F -0.113 7.113 22 C 0.016 3.984 23 H 0.264 0.736 24 H 0.053 0.947 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.151 0.849 30 H 0.154 0.846 31 H 0.065 0.935 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.130 -4.944 8.833 20.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.128 4.128 3 Si 0.699 3.301 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.179 1.179 7 C -0.552 4.552 8 H 0.092 0.908 9 C -0.020 4.020 10 C -0.136 4.136 11 N -0.207 5.207 12 C -0.074 4.074 13 C -0.109 4.109 14 C 0.115 3.885 15 F -0.100 7.100 16 C -0.158 4.158 17 C -0.123 4.123 18 C 0.034 3.966 19 F -0.105 7.105 20 C 0.085 3.915 21 F -0.091 7.091 22 C -0.112 4.112 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.105 0.895 29 H 0.169 0.831 30 H 0.171 0.829 31 H 0.083 0.917 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 18.557 -4.656 8.635 20.991 hybrid contribution -0.637 0.768 0.516 1.123 sum 17.920 -3.889 9.151 20.494 Atomic orbital electron populations 1.69909 1.06395 1.27117 1.50146 1.24993 0.94630 0.99203 0.93953 0.86941 0.80937 0.83502 0.78687 1.20293 1.21455 1.17925 1.20952 0.88271 0.94548 1.51422 0.90766 1.20736 0.96472 0.92344 0.92476 1.24665 0.92591 0.94839 1.01480 1.68637 1.35283 1.08079 1.08746 1.21513 0.94041 0.97848 0.93961 1.19847 0.95973 0.98868 0.96232 1.17125 0.92252 0.92228 0.86915 1.91540 1.95206 1.67791 1.55433 1.21002 0.99332 0.99511 0.95918 1.20813 0.94990 0.98215 0.98274 1.17626 0.93422 0.96271 0.89300 1.91542 1.95533 1.68573 1.54845 1.17233 0.79693 0.98399 0.96218 1.91596 1.36573 1.88640 1.92277 1.23890 0.92510 0.99179 0.95670 0.92587 0.92881 0.91457 0.91148 0.91791 0.89468 0.83095 0.82860 0.91690 0.90817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.24 13.96 55.43 0.77 -26.46 16 2 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.87 21.39 27.08 -169.99 -4.60 16.79 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.26 -5.96 5.27 56.52 0.30 -5.66 16 7 C -0.51 -14.18 9.33 -34.44 -0.32 -14.50 16 8 H 0.07 2.21 8.06 -52.49 -0.42 1.79 16 9 C 0.00 -0.02 2.88 -90.84 -0.26 -0.28 16 10 C -0.01 -0.15 6.10 -2.57 -0.02 -0.17 16 11 N -0.48 -9.25 6.15 -239.49 -1.47 -10.73 16 12 C 0.05 0.88 4.57 -4.97 -0.02 0.86 16 13 C -0.11 -1.55 5.45 -104.50 -0.57 -2.12 16 14 C 0.14 1.68 7.24 -39.43 -0.29 1.40 16 15 F -0.12 -1.59 16.47 2.25 0.04 -1.56 16 16 C -0.14 -1.29 10.02 -39.51 -0.40 -1.69 16 17 C -0.10 -0.96 10.02 -39.54 -0.40 -1.36 16 18 C 0.05 0.68 7.31 -39.37 -0.29 0.39 16 19 F -0.13 -1.67 17.18 2.25 0.04 -1.64 16 20 C 0.11 1.56 7.25 -39.37 -0.29 1.27 16 21 F -0.11 -1.91 15.65 2.25 0.04 -1.87 16 22 C 0.02 0.31 7.50 -2.76 -0.02 0.29 16 23 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 24 H 0.05 1.26 7.20 -51.93 -0.37 0.88 16 25 H 0.07 1.48 6.82 -51.93 -0.35 1.13 16 26 H 0.07 1.57 7.20 -51.93 -0.37 1.20 16 27 H 0.06 1.07 6.88 -51.93 -0.36 0.71 16 28 H 0.09 1.28 7.57 -51.93 -0.39 0.89 16 29 H 0.15 0.95 8.06 -52.49 -0.42 0.52 16 30 H 0.15 0.93 8.06 -52.48 -0.42 0.51 16 31 H 0.06 1.27 7.88 -51.92 -0.41 0.86 16 32 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 283.29 15.07 4.27 4.27 Total: -1.00 -30.07 283.29 -7.07 -37.14 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -3.19 Total: -2.06 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -2.96 Total: -13.88 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: -0.70 Total: -37.19 kcal Atomic # 9 Polarization: -5.18 SS G_CDS: 0.11 Total: -5.07 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.60 Total: 16.79 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.07 -7.07 -37.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137925565.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.352 kcal (2) G-P(sol) polarization free energy of solvation -30.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds