Wall clock time and date at job start Mon Mar 30 2020 00:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 120.00084 * 2 1 4 4 H 1.48506 * 109.47056 * 270.00056 * 3 2 1 5 5 H 1.48501 * 109.47403 * 29.99937 * 3 2 1 6 6 H 1.48493 * 109.47309 * 150.00196 * 3 2 1 7 7 C 1.37877 * 119.99589 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00411 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99669 * 179.97438 * 7 2 1 10 10 C 1.53935 * 113.73364 * 81.23515 * 9 7 2 11 11 N 1.48296 * 86.06285 * 138.12975 * 10 9 7 12 12 C 1.46902 * 111.00409 * 222.41947 * 11 10 9 13 13 C 1.50702 * 109.47215 * 269.34877 * 12 11 10 14 14 C 1.38451 * 120.01374 * 269.73061 * 13 12 11 15 15 F 1.35095 * 119.99222 * 359.97438 * 14 13 12 16 16 C 1.38433 * 120.01859 * 179.74251 * 14 13 12 17 17 C 1.38241 * 120.04134 * 0.50550 * 16 14 13 18 18 C 1.38355 * 120.02605 * 359.77084 * 17 16 14 19 19 F 1.35108 * 120.01324 * 179.97438 * 18 17 16 20 20 C 1.38358 * 120.01017 * 90.00279 * 13 12 11 21 21 F 1.35103 * 120.01788 * 0.02562 * 20 13 12 22 22 C 1.47961 * 90.75572 * 335.31010 * 11 10 9 23 23 H 0.96995 * 119.99785 * 359.97438 * 1 2 3 24 24 H 1.09002 * 112.93816 * 309.66794 * 9 7 2 25 25 H 1.09001 * 113.76001 * 252.50560 * 10 9 7 26 26 H 1.09000 * 113.75996 * 23.86376 * 10 9 7 27 27 H 1.09001 * 109.47358 * 29.35236 * 12 11 10 28 28 H 1.09004 * 109.47314 * 149.35402 * 12 11 10 29 29 H 1.08001 * 119.98023 * 180.23255 * 16 14 13 30 30 H 1.08004 * 119.98830 * 179.74813 * 17 16 14 31 31 H 1.09007 * 113.75652 * 270.36911 * 22 11 10 32 32 H 1.08993 * 113.76177 * 139.00817 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.1317 -0.9797 1.3914 11 7 5.0990 -2.0373 1.0109 12 6 5.3317 -2.9643 2.1266 13 6 6.4922 -2.4739 2.9535 14 6 7.7794 -2.8861 2.6535 15 9 7.9951 -3.7286 1.6197 16 6 8.8461 -2.4315 3.4097 17 6 8.6261 -1.5739 4.4714 18 6 7.3400 -1.1653 4.7763 19 9 7.1252 -0.3275 5.8142 20 6 6.2711 -1.6159 4.0162 21 9 5.0147 -1.2178 4.3133 22 6 4.1311 -2.6025 0.0450 23 1 -0.4849 0.8400 0.0004 24 1 3.9361 -0.5532 -0.7738 25 1 4.5830 0.0035 1.5245 26 1 3.4736 -1.2616 2.2133 27 1 4.4382 -3.0155 2.7488 28 1 5.5585 -3.9556 1.7342 29 1 9.8504 -2.7505 3.1729 30 1 9.4586 -1.2229 5.0633 31 1 3.4728 -3.3581 0.4740 32 1 4.5821 -2.9150 -0.8968 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137925565.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:05 Heat of formation + Delta-G solvation = -91.333705 kcal Electronic energy + Delta-G solvation = -20668.123355 eV Core-core repulsion = 16986.622182 eV Total energy + Delta-G solvation = -3681.501173 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.62324 -50.03463 -49.70197 -40.81503 -39.56240 -34.95794 -33.74759 -31.10550 -30.51073 -27.64342 -26.96168 -24.69590 -23.97492 -22.55658 -20.49337 -19.37213 -19.20759 -18.90825 -18.34630 -17.69489 -17.02754 -16.87350 -16.50348 -16.45995 -16.08358 -15.74381 -15.58739 -15.41998 -15.34393 -14.68681 -14.56802 -14.08248 -13.56640 -13.45115 -13.22261 -12.93132 -12.82659 -12.49293 -12.17018 -11.86012 -11.73648 -11.50669 -11.20359 -10.72242 -10.11467 -9.79288 -9.69634 -8.32420 -6.37214 -0.32756 -0.26883 1.34080 1.36877 1.48430 2.06014 2.34389 2.57389 2.89533 3.00802 3.10782 3.30515 3.34150 3.52863 3.80650 4.02003 4.15464 4.19767 4.37067 4.54278 4.61483 4.64173 4.71575 4.76797 4.81060 4.82295 4.92975 4.95690 5.30960 5.43425 5.59717 5.61400 6.08533 6.25741 6.68293 7.29590 8.83645 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.022753 B = 0.005890 C = 0.005104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.318903 B = 4752.798654 C = 5484.166862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.017 3.983 3 Si 0.936 3.064 4 H -0.267 1.267 5 H -0.289 1.289 6 H -0.238 1.238 7 C -0.516 4.516 8 H 0.036 0.964 9 C -0.014 4.014 10 C 0.004 3.996 11 N -0.476 5.476 12 C 0.056 3.944 13 C -0.128 4.128 14 C 0.129 3.871 15 F -0.126 7.126 16 C -0.115 4.115 17 C -0.079 4.079 18 C 0.045 3.955 19 F -0.134 7.134 20 C 0.076 3.924 21 F -0.137 7.137 22 C 0.024 3.976 23 H 0.266 0.734 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.102 0.898 29 H 0.194 0.806 30 H 0.197 0.803 31 H 0.061 0.939 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.171 -4.683 9.318 24.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.180 4.180 3 Si 0.760 3.240 4 H -0.192 1.192 5 H -0.215 1.215 6 H -0.161 1.161 7 C -0.554 4.554 8 H 0.054 0.946 9 C -0.034 4.034 10 C -0.125 4.125 11 N -0.198 5.198 12 C -0.072 4.072 13 C -0.130 4.130 14 C 0.108 3.892 15 F -0.105 7.105 16 C -0.133 4.133 17 C -0.098 4.098 18 C 0.025 3.975 19 F -0.112 7.112 20 C 0.055 3.945 21 F -0.115 7.115 22 C -0.104 4.104 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.120 0.880 29 H 0.211 0.789 30 H 0.214 0.786 31 H 0.079 0.921 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 22.623 -4.416 9.121 24.789 hybrid contribution -1.848 0.566 0.397 1.973 sum 20.775 -3.849 9.518 23.173 Atomic orbital electron populations 1.70051 1.08263 1.28148 1.52219 1.25854 0.95343 1.03080 0.93761 0.85923 0.80162 0.78710 0.79245 1.19245 1.21501 1.16093 1.21192 0.90714 0.93075 1.50412 0.94574 1.20772 0.93688 0.95187 0.93705 1.24358 0.92809 0.95750 0.99540 1.68576 1.33656 1.08024 1.09561 1.21455 0.94715 0.97954 0.93081 1.19695 0.96295 1.00330 0.96690 1.17346 0.92232 0.92332 0.87263 1.91532 1.95146 1.67996 1.55788 1.21458 1.00152 0.97533 0.94164 1.21309 0.94466 0.96299 0.97681 1.17906 0.94118 0.96436 0.89034 1.91524 1.95696 1.68868 1.55151 1.17572 0.79489 0.99849 0.97605 1.91527 1.38272 1.89122 1.92606 1.23806 0.92489 0.97104 0.97001 0.92484 0.92523 0.91586 0.92749 0.93180 0.87964 0.78894 0.78624 0.92076 0.88643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.39 13.96 21.45 0.30 -59.09 16 2 C 0.02 1.01 5.47 84.65 0.46 1.47 16 3 Si 0.94 44.46 27.08 68.60 1.86 46.32 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 6 H -0.24 -10.51 5.27 99.48 0.52 -9.99 16 7 C -0.52 -29.35 9.33 25.60 0.24 -29.11 16 8 H 0.04 2.26 8.06 -2.91 -0.02 2.24 16 9 C -0.01 -0.66 2.88 -10.89 -0.03 -0.69 16 10 C 0.00 0.19 6.10 86.34 0.53 0.72 16 11 N -0.48 -17.74 6.15 -911.59 -5.61 -23.35 16 12 C 0.06 1.79 4.57 85.56 0.39 2.18 16 13 C -0.13 -3.55 5.45 -19.78 -0.11 -3.66 16 14 C 0.13 2.80 7.24 22.37 0.16 2.96 16 15 F -0.13 -2.94 16.47 44.97 0.74 -2.19 16 16 C -0.11 -1.56 10.02 22.32 0.22 -1.33 16 17 C -0.08 -1.09 10.02 22.30 0.22 -0.86 16 18 C 0.05 1.03 7.31 22.40 0.16 1.19 16 19 F -0.13 -3.32 17.18 44.97 0.77 -2.55 16 20 C 0.08 2.18 7.25 22.40 0.16 2.34 16 21 F -0.14 -4.77 15.65 44.97 0.70 -4.06 16 22 C 0.02 0.95 7.50 86.41 0.65 1.59 16 23 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 24 H 0.06 2.62 7.20 -2.39 -0.02 2.60 16 25 H 0.07 2.85 6.82 -2.39 -0.02 2.84 16 26 H 0.05 2.51 7.20 -2.39 -0.02 2.49 16 27 H 0.05 1.73 6.88 -2.39 -0.02 1.71 16 28 H 0.10 2.90 7.57 -2.39 -0.02 2.88 16 29 H 0.19 1.08 8.06 -2.91 -0.02 1.05 16 30 H 0.20 1.08 8.06 -2.91 -0.02 1.06 16 31 H 0.06 2.42 7.88 -2.38 -0.02 2.40 16 32 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 Total: -1.00 -67.92 283.29 2.81 -65.11 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: 0.97 Total: 2.99 kcal Atomic # 6 Polarization: -26.25 SS G_CDS: 3.06 Total: -23.18 kcal Atomic # 7 Polarization: -77.13 SS G_CDS: -5.31 Total: -82.44 kcal Atomic # 9 Polarization: -11.02 SS G_CDS: 2.22 Total: -8.80 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.86 Total: 46.32 kcal Total: -67.92 2.81 -65.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137925565.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.223 kcal (2) G-P(sol) polarization free energy of solvation -67.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds