Wall clock time and date at job start Mon Mar 30 2020 01:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.57689 * 2 1 4 4 O 1.46046 * 110.63738 * 237.15138 * 2 1 3 5 5 C 1.33768 * 109.51399 * 241.52834 * 4 2 1 6 6 O 1.21506 * 123.06946 * 179.97438 * 5 4 2 7 7 N 1.34003 * 113.85570 * 359.91767 * 5 4 2 8 8 C 1.47095 * 108.88170 * 359.97438 * 7 5 4 9 9 H 1.09010 * 110.55872 * 118.71924 * 8 7 5 10 10 C 1.50693 * 110.56853 * 241.42613 * 8 7 5 11 11 O 1.21287 * 119.99830 * 16.56162 * 10 8 7 12 12 N 1.34780 * 120.00288 * 196.55940 * 10 8 7 13 13 C 1.46491 * 120.00091 * 179.97438 * 12 10 8 14 14 C 1.50702 * 109.46957 * 179.97438 * 13 12 10 15 15 O 1.21293 * 120.00255 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99928 * 179.72354 * 14 13 12 17 17 C 1.37101 * 120.00327 * 180.27606 * 16 14 13 18 18 H 1.08001 * 119.99426 * 0.02562 * 17 16 14 19 19 C 1.38942 * 120.00412 * 180.02562 * 17 16 14 20 20 N 1.31414 * 120.00005 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00325 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47047 * 89.99811 * 21 19 17 23 23 H 1.48501 * 109.47447 * 210.00167 * 21 19 17 24 24 H 1.48499 * 109.46902 * 330.00508 * 21 19 17 25 25 H 1.09000 * 109.47007 * 297.29993 * 1 2 3 26 26 H 1.08999 * 109.46816 * 57.29853 * 1 2 3 27 27 H 1.09003 * 109.46701 * 177.30019 * 1 2 3 28 28 H 0.97005 * 125.55854 * 179.97438 * 7 5 4 29 29 H 0.97003 * 119.99349 * 0.02562 * 12 10 8 30 30 H 1.09004 * 109.47166 * 60.00164 * 13 12 10 31 31 H 1.08994 * 109.47507 * 299.99870 * 13 12 10 32 32 H 0.97000 * 120.00317 * 0.28382 * 16 14 13 33 33 H 0.96996 * 120.00330 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9131 1.0205 0.0000 4 8 2.0447 -0.7413 -1.1482 5 6 2.7647 -1.7844 -0.7203 6 8 3.3077 -2.5686 -1.4730 7 7 2.8334 -1.8846 0.6142 8 6 2.0707 -0.7793 1.2144 9 1 1.2489 -1.1647 1.8181 10 6 2.9723 0.0953 2.0469 11 8 4.1758 0.0281 1.9118 12 7 2.4415 0.9522 2.9416 13 6 3.3180 1.8020 3.7512 14 6 2.4815 2.6611 4.6640 15 8 1.2720 2.5719 4.6409 16 7 3.0774 3.5241 5.5105 17 6 2.3166 4.3016 6.3450 18 1 1.2398 4.2222 6.3243 19 6 2.9310 5.1918 7.2172 20 7 4.2413 5.2888 7.2419 21 14 1.8944 6.2516 8.3537 22 1 1.6740 5.5343 9.6351 23 1 2.6001 7.5313 8.6177 24 1 0.5849 6.5316 7.7117 25 1 -0.3633 0.4713 0.9132 26 1 -0.3633 0.5552 -0.8648 27 1 -0.3633 -1.0266 -0.0484 28 1 3.3085 -2.5737 1.1044 29 1 1.4790 1.0057 3.0498 30 1 3.9120 2.4396 3.0963 31 1 3.9812 1.1758 4.3479 32 1 4.0446 3.5954 5.5292 33 1 4.6702 5.9105 7.8505 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140177028.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:27 Heat of formation + Delta-G solvation = -144.966020 kcal Electronic energy + Delta-G solvation = -20418.624027 eV Core-core repulsion = 16865.804659 eV Total energy + Delta-G solvation = -3552.819368 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.105 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.09099 -39.64424 -38.27827 -37.42541 -34.95581 -34.68734 -33.91871 -32.34055 -31.50266 -28.77851 -26.67420 -24.56751 -23.21338 -22.52818 -20.79715 -19.81546 -18.57500 -18.13138 -17.78605 -17.30407 -16.32131 -15.83677 -15.53457 -15.45558 -14.90145 -14.84637 -14.60713 -14.17146 -14.13534 -13.67049 -13.55726 -13.19503 -12.51683 -12.37643 -12.22373 -11.95122 -11.72993 -11.20957 -11.09193 -10.91094 -10.54879 -10.53194 -10.40392 -9.74554 -9.52459 -9.13682 -8.78540 -8.21990 -6.62015 -4.04720 2.20919 2.30208 2.50017 2.85640 3.03813 3.15925 3.20407 3.31358 3.59731 3.70897 4.00882 4.19477 4.31575 4.53822 4.70167 4.81048 4.91602 5.06187 5.26577 5.34553 5.65073 5.70103 5.75792 5.89444 6.33122 6.48854 6.96055 7.35861 7.40119 7.79088 7.84618 8.02886 8.32029 8.93261 9.26549 9.73238 10.54516 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.046099 B = 0.003381 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.249062 B = 8278.673179 C = 8690.720928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.082 3.918 3 H 0.122 0.878 4 O -0.321 6.321 5 C 0.652 3.348 6 O -0.522 6.522 7 N -0.709 5.709 8 C 0.080 3.920 9 H 0.129 0.871 10 C 0.499 3.501 11 O -0.526 6.526 12 N -0.697 5.697 13 C 0.108 3.892 14 C 0.425 3.575 15 O -0.599 6.599 16 N -0.545 5.545 17 C -0.308 4.308 18 H 0.107 0.893 19 C 0.027 3.973 20 N -0.892 5.892 21 Si 0.934 3.066 22 H -0.276 1.276 23 H -0.282 1.282 24 H -0.268 1.268 25 H 0.092 0.908 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.440 0.560 29 H 0.413 0.587 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.396 0.604 33 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.621 -8.658 -8.498 13.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.025 3.975 3 H 0.140 0.860 4 O -0.232 6.232 5 C 0.405 3.595 6 O -0.406 6.406 7 N -0.382 5.382 8 C -0.030 4.030 9 H 0.147 0.853 10 C 0.281 3.719 11 O -0.402 6.402 12 N -0.352 5.352 13 C -0.020 4.020 14 C 0.210 3.790 15 O -0.486 6.486 16 N -0.179 5.179 17 C -0.437 4.437 18 H 0.124 0.876 19 C -0.176 4.176 20 N -0.532 5.532 21 Si 0.760 3.240 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.192 1.192 25 H 0.111 0.889 26 H 0.101 0.899 27 H 0.091 0.909 28 H 0.283 0.717 29 H 0.252 0.748 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.230 0.770 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.270 -8.814 -9.202 13.789 hybrid contribution 0.048 0.446 1.221 1.301 sum -5.222 -8.368 -7.981 12.688 Atomic orbital electron populations 1.22184 0.90629 1.04274 1.04930 1.23891 0.96958 0.96580 0.80024 0.86022 1.87380 1.64051 1.38923 1.32820 1.18406 0.78051 0.80665 0.82418 1.91079 1.49003 1.42505 1.58054 1.45650 1.56442 1.30049 1.06013 1.22405 0.95198 0.88970 0.96441 0.85335 1.20425 0.89167 0.81287 0.80979 1.90774 1.14577 1.67585 1.67296 1.45656 1.12066 1.39163 1.38279 1.21031 0.92829 0.93838 0.94289 1.19646 0.88581 0.85308 0.85444 1.90496 1.14073 1.71575 1.72424 1.41800 1.09848 1.33682 1.32602 1.19735 0.92924 1.16359 1.14683 0.87565 1.25347 0.96020 0.97976 0.98264 1.69608 1.08321 1.37208 1.38067 0.85799 0.79513 0.78792 0.79864 1.20201 1.20737 1.19242 0.88906 0.89902 0.90922 0.71654 0.74832 0.89527 0.89519 0.76997 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 9.46 37.16 0.35 -0.60 16 2 C 0.08 0.72 4.15 -26.16 -0.11 0.61 16 3 H 0.12 1.04 7.72 -51.93 -0.40 0.64 16 4 O -0.32 -3.97 10.81 -37.82 -0.41 -4.38 16 5 C 0.65 8.96 9.16 53.71 0.49 9.45 16 6 O -0.52 -9.04 18.04 -19.11 -0.34 -9.38 16 7 N -0.71 -7.56 5.64 -59.36 -0.33 -7.90 16 8 C 0.08 0.73 3.81 -68.19 -0.26 0.47 16 9 H 0.13 0.74 7.73 -51.92 -0.40 0.34 16 10 C 0.50 6.28 6.95 -10.99 -0.08 6.20 16 11 O -0.53 -8.65 16.58 5.55 0.09 -8.56 16 12 N -0.70 -9.15 5.53 -61.48 -0.34 -9.49 16 13 C 0.11 1.71 6.15 -5.20 -0.03 1.68 16 14 C 0.42 8.77 7.85 -10.98 -0.09 8.68 16 15 O -0.60 -13.77 15.24 5.55 0.08 -13.68 16 16 N -0.55 -12.57 5.29 -10.96 -0.06 -12.63 16 17 C -0.31 -7.90 9.68 -14.93 -0.14 -8.05 16 18 H 0.11 2.84 7.16 -52.49 -0.38 2.46 16 19 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 20 N -0.89 -22.85 13.05 55.50 0.72 -22.12 16 21 Si 0.93 19.60 29.55 -169.99 -5.02 14.58 16 22 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 24 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 25 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.44 4.06 8.96 -40.82 -0.37 3.69 16 29 H 0.41 5.03 7.44 -40.82 -0.30 4.73 16 30 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.40 8.83 7.90 -40.82 -0.32 8.50 16 33 H 0.28 6.68 8.31 -40.82 -0.34 6.34 16 LS Contribution 299.70 15.07 4.52 4.52 Total: -1.00 -33.02 299.70 -4.47 -37.49 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -3.42 Total: 12.54 kcal Atomic # 6 Polarization: 18.99 SS G_CDS: 0.04 Total: 19.03 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: -0.01 Total: -52.15 kcal Atomic # 8 Polarization: -35.43 SS G_CDS: -0.58 Total: -36.01 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.02 -4.47 -37.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140177028.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.471 kcal (2) G-P(sol) polarization free energy of solvation -33.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds