Wall clock time and date at job start Mon Mar 30 2020 00:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31576 * 1 3 3 Si 1.86806 * 119.99929 * 2 1 4 4 H 1.48499 * 109.47052 * 270.00115 * 3 2 1 5 5 H 1.48499 * 109.46791 * 30.00354 * 3 2 1 6 6 H 1.48502 * 109.46879 * 150.00143 * 3 2 1 7 7 C 1.38630 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99988 * 179.97438 * 7 2 1 9 9 O 1.34804 * 119.99700 * 359.97438 * 7 2 1 10 10 C 1.35784 * 116.99700 * 174.93456 * 9 7 2 11 11 C 1.38716 * 120.10525 * 5.65284 * 10 9 7 12 12 C 1.38176 * 120.00982 * 180.02562 * 11 10 9 13 13 C 1.38352 * 120.21039 * 359.97438 * 12 11 10 14 14 C 1.38181 * 120.20965 * 359.97438 * 13 12 11 15 15 C 1.38782 * 119.98958 * 359.70194 * 14 13 12 16 16 N 1.39785 * 120.10931 * 180.29520 * 15 14 13 17 17 C 1.39668 * 120.00551 * 254.87210 * 16 15 14 18 18 C 1.38999 * 120.04522 * 354.98236 * 17 16 15 19 19 C 1.38102 * 120.03117 * 179.76951 * 18 17 16 20 20 C 1.38221 * 120.13306 * 0.51051 * 19 18 17 21 21 C 1.38779 * 120.09536 * 359.74340 * 20 19 18 22 22 O 1.35906 * 120.01376 * 179.97438 * 21 20 19 23 23 C 1.38597 * 119.96694 * 359.97438 * 21 20 19 24 24 H 0.97003 * 120.00166 * 0.02562 * 1 2 3 25 25 H 1.08006 * 119.99934 * 0.02562 * 11 10 9 26 26 H 1.08002 * 119.89589 * 179.97438 * 12 11 10 27 27 H 1.08003 * 119.89677 * 179.97438 * 13 12 11 28 28 H 1.08000 * 120.00514 * 179.97438 * 14 13 12 29 29 H 0.97002 * 120.00060 * 74.87152 * 16 15 14 30 30 H 1.08004 * 119.98537 * 359.97438 * 18 17 16 31 31 H 1.08007 * 119.93737 * 180.25294 * 19 18 17 32 32 H 1.08004 * 119.95307 * 179.76919 * 20 19 18 33 33 H 0.96696 * 113.99899 * 270.01660 * 22 21 20 34 34 H 1.08008 * 120.06845 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4972 2.0465 -1.4001 5 1 1.4472 2.6526 0.7001 6 1 3.5473 1.4402 0.7000 7 6 2.0090 -1.2005 -0.0005 8 1 3.0890 -1.2005 -0.0010 9 8 1.3349 -2.3680 -0.0005 10 6 2.0704 -3.5043 -0.1079 11 6 3.4560 -3.4404 -0.0933 12 6 4.2025 -4.5979 -0.2032 13 6 3.5724 -5.8234 -0.3275 14 6 2.1927 -5.8975 -0.3420 15 6 1.4346 -4.7409 -0.2255 16 7 0.0386 -4.8137 -0.2336 17 6 -0.6747 -4.4188 -1.3677 18 6 -0.0068 -3.8563 -2.4491 19 6 -0.7118 -3.4704 -3.5721 20 6 -2.0836 -3.6325 -3.6199 21 6 -2.7566 -4.1888 -2.5412 22 8 -4.1056 -4.3469 -2.5898 23 6 -2.0524 -4.5828 -1.4144 24 1 -0.4850 0.8401 -0.0004 25 1 3.9515 -2.4856 0.0040 26 1 5.2812 -4.5459 -0.1920 27 1 4.1609 -6.7249 -0.4135 28 1 1.7043 -6.8558 -0.4397 29 1 -0.4347 -5.1384 0.5483 30 1 1.0645 -3.7239 -2.4124 31 1 -0.1908 -3.0371 -4.4132 32 1 -2.6326 -3.3263 -4.4982 33 1 -4.6029 -3.5879 -2.2558 34 1 -2.5744 -5.0163 -0.5741 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212599081.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:54 Heat of formation + Delta-G solvation = -8.656531 kcal Electronic energy + Delta-G solvation = -20153.186610 eV Core-core repulsion = 17017.127329 eV Total energy + Delta-G solvation = -3136.059281 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.71500 -38.80286 -36.87596 -36.24629 -34.24224 -32.32786 -30.28998 -29.28475 -28.66696 -27.27524 -25.39034 -22.45414 -22.03519 -21.53924 -20.62546 -18.06313 -18.02254 -17.20896 -16.36136 -15.87453 -15.32514 -14.76673 -14.69593 -14.41287 -14.22938 -13.84387 -13.44827 -13.17878 -13.07442 -12.80263 -12.10015 -11.75448 -11.61564 -11.39578 -11.17152 -10.95837 -10.91023 -10.83203 -10.52676 -10.18421 -9.75254 -9.41831 -8.89831 -8.24621 -8.13102 -7.34921 -6.83691 -6.49513 -4.08514 1.88604 1.94421 2.17105 2.27338 3.08708 3.09864 3.13994 3.89933 3.96187 4.32997 4.44731 4.77462 5.01901 5.14998 5.43659 5.58481 5.67889 5.71635 5.84916 5.95117 6.06552 6.15457 6.24154 6.36398 6.55068 6.60338 6.87352 6.96302 6.98677 7.05075 7.11826 7.21484 7.26369 7.29018 7.60932 7.91174 7.99493 8.14761 8.34743 8.94783 9.63243 10.66397 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.012633 B = 0.008140 C = 0.005451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.832756 B = 3438.836238 C = 5135.059521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.044 3.956 3 Si 0.938 3.062 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.396 4.396 8 H 0.091 0.909 9 O -0.156 6.156 10 C 0.147 3.853 11 C -0.233 4.233 12 C -0.070 4.070 13 C -0.211 4.211 14 C -0.074 4.074 15 C 0.054 3.946 16 N -0.677 5.677 17 C 0.249 3.751 18 C -0.168 4.168 19 C -0.062 4.062 20 C -0.207 4.207 21 C 0.137 3.863 22 O -0.506 6.506 23 C -0.223 4.223 24 H 0.270 0.730 25 H 0.129 0.871 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.114 0.886 29 H 0.399 0.601 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.116 0.884 33 H 0.386 0.614 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.119 -6.301 -2.572 6.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.162 4.162 3 Si 0.762 3.238 4 H -0.198 1.198 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.473 4.473 8 H 0.108 0.892 9 O -0.058 6.058 10 C 0.091 3.909 11 C -0.253 4.253 12 C -0.089 4.089 13 C -0.230 4.230 14 C -0.094 4.094 15 C -0.040 4.040 16 N -0.301 5.301 17 C 0.147 3.853 18 C -0.190 4.190 19 C -0.081 4.081 20 C -0.228 4.228 21 C 0.093 3.907 22 O -0.316 6.316 23 C -0.246 4.246 24 H 0.080 0.920 25 H 0.147 0.853 26 H 0.127 0.873 27 H 0.127 0.873 28 H 0.132 0.868 29 H 0.234 0.766 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.134 0.866 33 H 0.241 0.759 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.026 -6.591 -2.796 7.159 hybrid contribution 0.270 1.319 0.614 1.480 sum 0.244 -5.271 -2.182 5.710 Atomic orbital electron populations 1.70062 1.05859 1.27623 1.44924 1.25257 0.95794 0.98714 0.96395 0.85763 0.78985 0.80237 0.78781 1.19820 1.20261 1.19204 1.21335 0.91796 0.80933 1.53197 0.89150 1.84045 1.33757 1.11009 1.76982 1.19742 0.90341 0.88023 0.92838 1.21117 0.93334 0.99222 1.11600 1.20817 0.98628 0.92299 0.97132 1.20478 0.93741 0.97130 1.11671 1.20871 0.93673 0.96403 0.98455 1.16593 0.82540 0.90740 1.14093 1.41464 1.02928 1.71328 1.14357 1.17571 0.89937 0.91002 0.86829 1.20683 1.00470 1.04181 0.93654 1.20662 0.93317 0.96838 0.97240 1.20975 0.94921 1.07132 0.99768 1.17996 0.82429 0.97352 0.92942 1.84738 1.15303 1.44728 1.86853 1.20604 0.92730 1.11612 0.99647 0.92039 0.85300 0.87311 0.87311 0.86797 0.76563 0.86064 0.86339 0.86599 0.75852 0.86273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.25 13.67 55.48 0.76 -23.50 16 2 C 0.04 1.17 5.49 -17.52 -0.10 1.08 16 3 Si 0.94 20.09 29.55 -169.99 -5.02 15.06 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.40 -10.67 9.49 30.88 0.29 -10.38 16 8 H 0.09 2.26 5.21 -52.49 -0.27 1.99 16 9 O -0.16 -4.21 9.18 0.02 0.00 -4.21 16 10 C 0.15 3.39 5.47 -38.92 -0.21 3.17 16 11 C -0.23 -4.83 9.16 -39.43 -0.36 -5.19 16 12 C -0.07 -1.23 10.04 -39.56 -0.40 -1.62 16 13 C -0.21 -3.47 10.04 -39.56 -0.40 -3.87 16 14 C -0.07 -1.29 9.97 -39.40 -0.39 -1.69 16 15 C 0.05 1.10 4.89 -83.54 -0.41 0.69 16 16 N -0.68 -13.07 5.18 -8.30 -0.04 -13.12 16 17 C 0.25 5.02 6.50 -83.79 -0.54 4.47 16 18 C -0.17 -3.48 8.93 -39.35 -0.35 -3.83 16 19 C -0.06 -1.14 10.03 -39.64 -0.40 -1.54 16 20 C -0.21 -3.63 9.98 -39.39 -0.39 -4.03 16 21 C 0.14 2.43 6.70 -39.25 -0.26 2.17 16 22 O -0.51 -7.69 13.50 -19.45 -0.26 -7.95 16 23 C -0.22 -4.10 9.84 -39.23 -0.39 -4.49 16 24 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.13 2.68 5.64 -52.48 -0.30 2.38 16 26 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 27 H 0.11 1.49 8.06 -52.48 -0.42 1.06 16 28 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 29 H 0.40 6.80 8.84 -40.82 -0.36 6.44 16 30 H 0.12 2.69 6.28 -52.48 -0.33 2.36 16 31 H 0.12 1.91 8.06 -52.48 -0.42 1.49 16 32 H 0.12 1.76 8.06 -52.48 -0.42 1.34 16 33 H 0.39 4.14 9.06 45.56 0.41 4.56 16 34 H 0.12 1.96 8.06 -52.48 -0.42 1.54 16 LS Contribution 300.61 15.07 4.53 4.53 Total: -1.00 -30.87 300.61 -6.87 -37.73 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -2.52 Total: 16.51 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: -4.31 Total: -25.06 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.72 Total: -36.61 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: -0.26 Total: -12.17 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.87 -6.87 -37.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212599081.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.077 kcal (2) G-P(sol) polarization free energy of solvation -30.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds