Wall clock time and date at job start Mon Mar 30 2020 00:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31576 * 1 3 3 Si 1.86806 * 119.99929 * 2 1 4 4 H 1.48499 * 109.47052 * 270.00115 * 3 2 1 5 5 H 1.48499 * 109.46791 * 30.00354 * 3 2 1 6 6 H 1.48502 * 109.46879 * 150.00143 * 3 2 1 7 7 C 1.38630 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99988 * 179.97438 * 7 2 1 9 9 O 1.34804 * 119.99700 * 359.97438 * 7 2 1 10 10 C 1.35784 * 116.99700 * 174.93456 * 9 7 2 11 11 C 1.38716 * 120.10525 * 5.65284 * 10 9 7 12 12 C 1.38176 * 120.00982 * 180.02562 * 11 10 9 13 13 C 1.38352 * 120.21039 * 359.97438 * 12 11 10 14 14 C 1.38181 * 120.20965 * 359.97438 * 13 12 11 15 15 C 1.38782 * 119.98958 * 359.70194 * 14 13 12 16 16 N 1.39785 * 120.10931 * 180.29520 * 15 14 13 17 17 C 1.39668 * 120.00551 * 254.87210 * 16 15 14 18 18 C 1.38999 * 120.04522 * 354.98236 * 17 16 15 19 19 C 1.38102 * 120.03117 * 179.76951 * 18 17 16 20 20 C 1.38221 * 120.13306 * 0.51051 * 19 18 17 21 21 C 1.38779 * 120.09536 * 359.74340 * 20 19 18 22 22 O 1.35906 * 120.01376 * 179.97438 * 21 20 19 23 23 C 1.38597 * 119.96694 * 359.97438 * 21 20 19 24 24 H 0.97003 * 120.00166 * 0.02562 * 1 2 3 25 25 H 1.08006 * 119.99934 * 0.02562 * 11 10 9 26 26 H 1.08002 * 119.89589 * 179.97438 * 12 11 10 27 27 H 1.08003 * 119.89677 * 179.97438 * 13 12 11 28 28 H 1.08000 * 120.00514 * 179.97438 * 14 13 12 29 29 H 0.97002 * 120.00060 * 74.87152 * 16 15 14 30 30 H 1.08004 * 119.98537 * 359.97438 * 18 17 16 31 31 H 1.08007 * 119.93737 * 180.25294 * 19 18 17 32 32 H 1.08004 * 119.95307 * 179.76919 * 20 19 18 33 33 H 0.96696 * 113.99899 * 270.01660 * 22 21 20 34 34 H 1.08008 * 120.06845 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4972 2.0465 -1.4001 5 1 1.4472 2.6526 0.7001 6 1 3.5473 1.4402 0.7000 7 6 2.0090 -1.2005 -0.0005 8 1 3.0890 -1.2005 -0.0010 9 8 1.3349 -2.3680 -0.0005 10 6 2.0704 -3.5043 -0.1079 11 6 3.4560 -3.4404 -0.0933 12 6 4.2025 -4.5979 -0.2032 13 6 3.5724 -5.8234 -0.3275 14 6 2.1927 -5.8975 -0.3420 15 6 1.4346 -4.7409 -0.2255 16 7 0.0386 -4.8137 -0.2336 17 6 -0.6747 -4.4188 -1.3677 18 6 -0.0068 -3.8563 -2.4491 19 6 -0.7118 -3.4704 -3.5721 20 6 -2.0836 -3.6325 -3.6199 21 6 -2.7566 -4.1888 -2.5412 22 8 -4.1056 -4.3469 -2.5898 23 6 -2.0524 -4.5828 -1.4144 24 1 -0.4850 0.8401 -0.0004 25 1 3.9515 -2.4856 0.0040 26 1 5.2812 -4.5459 -0.1920 27 1 4.1609 -6.7249 -0.4135 28 1 1.7043 -6.8558 -0.4397 29 1 -0.4347 -5.1384 0.5483 30 1 1.0645 -3.7239 -2.4124 31 1 -0.1908 -3.0371 -4.4132 32 1 -2.6326 -3.3263 -4.4982 33 1 -4.6029 -3.5879 -2.2558 34 1 -2.5744 -5.0163 -0.5741 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212599081.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:54 Heat of formation + Delta-G solvation = -29.355377 kcal Electronic energy + Delta-G solvation = -20154.084179 eV Core-core repulsion = 17017.127329 eV Total energy + Delta-G solvation = -3136.956851 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.25463 -40.27653 -38.43207 -37.70953 -35.68679 -34.24033 -31.75893 -30.79430 -30.15320 -28.80369 -27.27310 -23.93438 -23.49113 -23.13802 -22.09574 -19.79814 -19.47627 -18.81786 -17.87724 -17.36046 -16.77514 -16.41120 -16.32764 -15.88559 -15.65279 -15.35405 -15.14670 -14.69701 -14.52722 -14.45728 -13.63443 -13.48737 -13.02341 -12.97175 -12.66808 -12.53604 -12.43602 -12.30900 -12.16072 -11.51912 -11.37383 -11.02605 -10.78320 -9.72583 -9.58358 -8.98649 -8.44485 -8.32020 -6.09650 0.43887 0.44737 0.70339 0.75496 1.34223 1.42667 1.49777 2.16621 2.50450 2.84117 2.90051 3.16957 3.45961 3.50388 4.03040 4.19429 4.27855 4.31757 4.36903 4.49539 4.65027 4.68473 4.74607 5.00621 5.03467 5.11591 5.15869 5.39643 5.54243 5.58718 5.63964 5.65348 5.75763 5.84070 6.01049 6.13895 6.57550 6.85107 6.93828 7.01521 7.82554 8.77641 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.012633 B = 0.008140 C = 0.005451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.832756 B = 3438.836238 C = 5135.059521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.014 4.014 3 Si 1.009 2.991 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.254 1.254 7 C -0.414 4.414 8 H 0.097 0.903 9 O -0.203 6.203 10 C 0.112 3.888 11 C -0.247 4.247 12 C -0.068 4.068 13 C -0.185 4.185 14 C -0.075 4.075 15 C 0.050 3.950 16 N -0.678 5.678 17 C 0.233 3.767 18 C -0.197 4.197 19 C -0.067 4.067 20 C -0.210 4.210 21 C 0.142 3.858 22 O -0.505 6.505 23 C -0.232 4.232 24 H 0.269 0.731 25 H 0.119 0.881 26 H 0.146 0.854 27 H 0.153 0.847 28 H 0.143 0.857 29 H 0.406 0.594 30 H 0.096 0.904 31 H 0.136 0.864 32 H 0.142 0.858 33 H 0.408 0.592 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.138 -7.873 -3.081 8.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.213 4.213 3 Si 0.829 3.171 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.178 1.178 7 C -0.491 4.491 8 H 0.115 0.885 9 O -0.108 6.108 10 C 0.059 3.941 11 C -0.267 4.267 12 C -0.086 4.086 13 C -0.204 4.204 14 C -0.094 4.094 15 C -0.044 4.044 16 N -0.304 5.304 17 C 0.131 3.869 18 C -0.219 4.219 19 C -0.086 4.086 20 C -0.230 4.230 21 C 0.097 3.903 22 O -0.318 6.318 23 C -0.255 4.255 24 H 0.078 0.922 25 H 0.137 0.863 26 H 0.164 0.836 27 H 0.171 0.829 28 H 0.160 0.840 29 H 0.243 0.757 30 H 0.115 0.885 31 H 0.154 0.846 32 H 0.160 0.840 33 H 0.267 0.733 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.014 -8.210 -3.298 8.905 hybrid contribution 0.014 1.473 0.731 1.644 sum 1.028 -6.737 -2.567 7.282 Atomic orbital electron populations 1.70206 1.07703 1.28328 1.48225 1.26384 0.96695 1.02218 0.96025 0.84723 0.77963 0.75361 0.79072 1.19107 1.19851 1.17809 1.21756 0.92348 0.81787 1.53188 0.88529 1.84020 1.34859 1.11762 1.80159 1.20321 0.91556 0.88099 0.94138 1.21278 0.92865 1.00392 1.12142 1.21226 1.00412 0.91349 0.95651 1.21055 0.93558 0.98315 1.07447 1.21264 0.94330 0.96500 0.97333 1.16969 0.83265 0.90788 1.13393 1.41483 1.02832 1.71421 1.14634 1.17764 0.90774 0.91487 0.86912 1.20661 0.99590 1.06383 0.95281 1.20929 0.94111 0.96420 0.97153 1.21267 0.94530 1.06562 1.00678 1.18103 0.83517 0.96156 0.92512 1.84679 1.14025 1.46121 1.86976 1.20837 0.92193 1.11825 1.00676 0.92188 0.86307 0.83618 0.82899 0.83957 0.75690 0.88533 0.84595 0.84008 0.73299 0.84689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.44 13.67 21.61 0.30 -54.14 16 2 C -0.01 -0.80 5.49 84.82 0.47 -0.34 16 3 Si 1.01 42.43 29.55 68.60 2.03 44.46 16 4 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 5 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 6 H -0.25 -9.96 7.11 99.48 0.71 -9.26 16 7 C -0.41 -23.43 9.49 67.91 0.64 -22.79 16 8 H 0.10 5.06 5.21 -2.91 -0.02 5.04 16 9 O -0.20 -11.58 9.18 -22.85 -0.21 -11.79 16 10 C 0.11 5.32 5.47 22.70 0.12 5.44 16 11 C -0.25 -10.28 9.16 22.37 0.20 -10.08 16 12 C -0.07 -2.19 10.04 22.28 0.22 -1.97 16 13 C -0.18 -5.33 10.04 22.28 0.22 -5.11 16 14 C -0.07 -2.42 9.97 22.39 0.22 -2.20 16 15 C 0.05 2.02 4.89 38.32 0.19 2.21 16 16 N -0.68 -26.68 5.18 -180.16 -0.93 -27.62 16 17 C 0.23 9.59 6.50 38.21 0.25 9.84 16 18 C -0.20 -8.46 8.93 22.42 0.20 -8.26 16 19 C -0.07 -2.52 10.03 22.23 0.22 -2.30 16 20 C -0.21 -7.14 9.98 22.40 0.22 -6.92 16 21 C 0.14 4.87 6.70 22.49 0.15 5.02 16 22 O -0.51 -14.27 13.50 -92.50 -1.25 -15.52 16 23 C -0.23 -8.51 9.84 22.50 0.22 -8.29 16 24 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 25 H 0.12 5.08 5.64 -2.91 -0.02 5.06 16 26 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 27 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 28 H 0.14 3.82 8.06 -2.91 -0.02 3.79 16 29 H 0.41 14.09 8.84 -92.71 -0.82 13.27 16 30 H 0.10 4.54 6.28 -2.91 -0.02 4.52 16 31 H 0.14 4.41 8.06 -2.91 -0.02 4.39 16 32 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 33 H 0.41 7.84 9.06 -74.06 -0.67 7.17 16 34 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -70.79 300.61 3.17 -67.62 By element: Atomic # 1 Polarization: 43.07 SS G_CDS: -0.33 Total: 42.74 kcal Atomic # 6 Polarization: -49.31 SS G_CDS: 3.56 Total: -45.75 kcal Atomic # 7 Polarization: -81.12 SS G_CDS: -0.64 Total: -81.76 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -1.46 Total: -27.31 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -70.79 3.17 -67.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212599081.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.269 kcal (2) G-P(sol) polarization free energy of solvation -70.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds